ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2n15 |
|---|---|
| Clone Library Name | barley_pub |
>RPE65_HUMAN (Q16518) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 46.6 bits (109), Expect = 3e-05 Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Frame = -3 Query: 475 AMEFPVINX-KYVGLHHRYAYAXVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKESCGD 299 A EFP IN KY G + YAY +N F L+ + KE+ Sbjct: 414 AFEFPQINYQKYCGKPYTYAYGLGLN--------------HFVPDRLCKLNVKTKET--- 456 Query: 298 SIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGP 119 + E + + S IFV+ DAL EDDG ++S V G A+++ + Sbjct: 457 -----WVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSE 511 Query: 118 VAKITLPQRVPYGFHGAF 65 VA+ + +P FHG F Sbjct: 512 VARAEVEINIPVTFHGLF 529
>RPE65_CERAE (Q9XT71) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 46.6 bits (109), Expect = 3e-05 Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Frame = -3 Query: 475 AMEFPVINX-KYVGLHHRYAYAXVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKESCGD 299 A EFP IN KY G + YAY +N F L+ + KE+ Sbjct: 414 AFEFPQINYQKYCGKPYTYAYGLGLN--------------HFVPDRLCKLNVKTKET--- 456 Query: 298 SIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGP 119 + E + + S IFV+ DAL EDDG ++S V G A+++ + Sbjct: 457 -----WVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSE 511 Query: 118 VAKITLPQRVPYGFHGAF 65 VA+ + +P FHG F Sbjct: 512 VARAEVEINIPVTFHGLF 529
>RPE65_CHICK (Q9YGX2) Retinal pigment epithelium-specific 65 kDa protein| Length = 533 Score = 45.8 bits (107), Expect = 6e-05 Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Frame = -3 Query: 475 AMEFPVINXK-YVGLHHRYAYAXVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKESCGD 299 A EFP IN K Y G + Y Y +N F L+ + KE+ Sbjct: 415 AFEFPQINYKKYGGKPYTYTYGLGLN--------------HFVPDRLCKLNVKTKET--- 457 Query: 298 SIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGP 119 + E + + S IFV+ DAL EDDG ++S V G+ A+++ + Sbjct: 458 -----WVWQEPDSYPSEPIFVSHPDALEEDDGVVLSIVISPGSGPKPAYLLILNAKDMSE 512 Query: 118 VAKITLPQRVPYGFHGAF 65 VA+ + +P FHG F Sbjct: 513 VARAEVEVNIPVTFHGLF 530
>RPE65_BOVIN (Q28175) Retinal pigment epithelium-specific 65 kDa protein| (Membrane receptor p63) Length = 532 Score = 45.8 bits (107), Expect = 6e-05 Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Frame = -3 Query: 475 AMEFPVINX-KYVGLHHRYAYAXVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKESCGD 299 A EFP IN KY G + YAY +N F L+ + KE+ Sbjct: 414 AFEFPQINYQKYGGKPYTYAYGLGLN--------------HFVPDRLCKLNVKTKET--- 456 Query: 298 SIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGP 119 + E + + S IFV+ DAL EDDG ++S V G A+++ + Sbjct: 457 -----WVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSE 511 Query: 118 VAKITLPQRVPYGFHGAF 65 VA+ + +P FHG F Sbjct: 512 VARAEVEINIPVTFHGLF 529
>RPE65_RAT (O70276) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = -3 Query: 271 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGPVAKITLPQR 92 E + + S IFV++ DAL EDDG ++S V G A+++ + +A+ + Sbjct: 461 EPDSYPSEPIFVSQPDALEEDDGVVLSVVVSPGAGQKPAYLLVLNAKDLSEIARAEVETN 520 Query: 91 VPYGFHGAF 65 +P FHG F Sbjct: 521 IPVTFHGLF 529
>RPE65_MOUSE (Q91ZQ5) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 44.7 bits (104), Expect = 1e-04 Identities = 22/69 (31%), Positives = 36/69 (52%) Frame = -3 Query: 271 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGPVAKITLPQR 92 E + + S IFV++ DAL EDDG ++S V G A+++ + +A+ + Sbjct: 461 EPDSYPSEPIFVSQPDALEEDDGVVLSVVVSPGAGQKPAYLLVLNAKDLSEIARAEVETN 520 Query: 91 VPYGFHGAF 65 +P FHG F Sbjct: 521 IPVTFHGLF 529
>RPE65_CANFA (Q9TVB8) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 43.5 bits (101), Expect = 3e-04 Identities = 23/69 (33%), Positives = 35/69 (50%) Frame = -3 Query: 271 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGPVAKITLPQR 92 E + + S IFV+ DAL EDDG ++S V G A+++ + VA+ + Sbjct: 461 EPDSYPSEPIFVSHPDALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEIN 520 Query: 91 VPYGFHGAF 65 +P FHG F Sbjct: 521 IPVTFHGLF 529
>RPE65_AMBTI (Q9YI25) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 43.1 bits (100), Expect = 4e-04 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 1/138 (0%) Frame = -3 Query: 475 AMEFPVINXK-YVGLHHRYAYAXVVNVEGSMAGGCGTVRPKFGGFAKLYLDQEIKESCGD 299 A EFP IN K + G + YAY +N F L+ + KE+ Sbjct: 414 AFEFPQINYKKHGGKDYTYAYGVGLN--------------HFVPDRLSKLNVKTKET--- 456 Query: 298 SIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGP 119 + E + + S IFV++ DA+ EDDG ++S V G A ++ + Sbjct: 457 -----WVWQEPDTYPSEPIFVSQPDAIEEDDGVVLSVVISPGEGQKPAFLLILNAKDMSE 511 Query: 118 VAKITLPQRVPYGFHGAF 65 +A+ + +P FHG F Sbjct: 512 IARAEVDSNIPVTFHGMF 529
>RPE65_CYNPY (Q8AXN9) Retinal pigment epithelium-specific 65 kDa protein| Length = 532 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/69 (27%), Positives = 36/69 (52%) Frame = -3 Query: 271 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIIDARRFESGPVAKITLPQR 92 E + + S IFV++ DA+ EDDG ++S + + G A ++ + +A+ + Sbjct: 461 EPDSYPSEPIFVSQPDAMEEDDGVVLSVIVNPGPGQKPAFLLILNAKDMSEIARAEVDIN 520 Query: 91 VPYGFHGAF 65 +P FHG + Sbjct: 521 IPVTFHGMY 529
>BCDO2_HUMAN (Q9BYV7) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 556 Score = 40.0 bits (92), Expect = 0.003 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -3 Query: 271 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQ-AHIIDARRFESGPVAKITLPQ 95 E + S +FV ED G I+S V N S ++DA+ FE + + +P Sbjct: 486 EDGFYPSEPVFVPAPGTNEEDGGVILSVVITPNQNESNFLLVLDAKNFEE--LGRAEVPV 543 Query: 94 RVPYGFHGAFV 62 ++PYGFHG F+ Sbjct: 544 QMPYGFHGTFI 554
>BCDO2_MACFA (Q8HXG8) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 556 Score = 39.7 bits (91), Expect = 0.004 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -3 Query: 271 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQ-AHIIDARRFESGPVAKITLPQ 95 E + S +FV ED G I+S V N S ++DA+ FE + + +P Sbjct: 486 EDGFYPSEPVFVPVPGTNEEDGGVILSVVITPNQNESNFLLVLDAKNFEE--LGRAEVPV 543 Query: 94 RVPYGFHGAFV 62 ++PYGFHG F+ Sbjct: 544 QMPYGFHGTFI 554
>BCDO2_MOUSE (Q99NF1) Beta,beta-carotene 9',10'-dioxygenase (EC 1.14.99.-)| (Beta-carotene dioxygenase 2) (B-diox-II) Length = 532 Score = 37.0 bits (84), Expect = 0.027 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Frame = -3 Query: 271 ETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQ-AHIIDARRFESGPVAKITLPQ 95 E + S +FV A ED G I+S V + S ++DA+ F + + +P Sbjct: 462 EEGFYPSEPVFVPVPGADEEDSGVILSVVITPNQSESNFLLVLDAKSFTE--LGRAEVPV 519 Query: 94 RVPYGFHGAFV 62 ++PYGFHG FV Sbjct: 520 QMPYGFHGTFV 530
>ERFB_YARLI (Q6C890) Palmitoyltransferase ERF2 (EC 2.3.1.-) (DHHC cysteine-rich| domain-containing protein ERF2) (Ras protein acyltransferase) Length = 408 Score = 30.8 bits (68), Expect = 2.0 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 5/34 (14%) Frame = +2 Query: 323 LVKI*FCKTSKLW-----SHCSTTTSHTPFHVHH 409 LV + +C T K+W SHCS + FH HH Sbjct: 205 LVYLKYCSTCKIWRPPRASHCSDCDNCVDFHDHH 238
>RF3_XANCP (Q8P6V6) Peptide chain release factor 3 (RF-3)| Length = 534 Score = 30.0 bits (66), Expect = 3.3 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%) Frame = +1 Query: 199 SIHHPHVAHPLSPQKL--LLSRIDLFQGGGTPHGLNLHK----TP*FLGQDIVLQNLQTL 360 S+ P +A + Q L L ++L QG P L+ ++ TP F G + +Q L Sbjct: 207 SLDAPGLAEKIGTQMLDELREELELVQGASNPFDLDAYRAGQQTPVFFGSGVNNFGVQPL 266 Query: 361 VSLFHNHQP 387 + F H P Sbjct: 267 LDFFVEHAP 275
>RSE1_DEBHA (Q6BYK1) Pre-mRNA-splicing factor RSE1| Length = 1256 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +3 Query: 294 IESPQDSLISWSRYSFAKPPNFGLTVPQPPAILP 395 ++SP D+ IS S Y + +G+T P P +LP Sbjct: 813 VDSPGDNEISSSSYIYIIESEYGITSPFPVTVLP 846
>PYRC_NEIMB (Q9K0D1) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 344 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +1 Query: 214 HVAHPLSPQKLLLSRIDLFQGGGTPH 291 +VA ++PQ LLL+R DL GG PH Sbjct: 189 NVAATVTPQHLLLNRNDLLVGGVRPH 214
>PYRC_NEIMA (Q9JVD6) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 344 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +1 Query: 214 HVAHPLSPQKLLLSRIDLFQGGGTPH 291 +VA ++PQ LLL+R DL GG PH Sbjct: 189 NVAATVTPQHLLLNRNDLLVGGVRPH 214
>PYRC_SYNY3 (P74438) Dihydroorotase (EC 3.5.2.3) (DHOase)| Length = 342 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +1 Query: 214 HVAHPLSPQKLLLSRIDLFQGGGTPH 291 ++A ++PQ LL SR LF+GG PH Sbjct: 189 NIAATITPQHLLFSRNALFKGGICPH 214
>PYRC_ARATH (O04904) Dihydroorotase, mitochondrial precursor (EC 3.5.2.3)| (DHOase) Length = 377 Score = 29.3 bits (64), Expect = 5.7 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +1 Query: 217 VAHPLSPQKLLLSRIDLFQGGGTPH 291 V ++PQ LLL+R LFQGG PH Sbjct: 224 VGATVTPQHLLLNRNALFQGGLQPH 248
>K0226_MOUSE (Q80U62) Protein KIAA0226| Length = 956 Score = 29.3 bits (64), Expect = 5.7 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 18/83 (21%) Frame = -3 Query: 400 VEGSMAGGCGTVRPKFGGFAKLYLDQEIKESCGDSIHVEYHHLETNQFC----------- 254 VEG ++ C V K+GG +L C D ++ YH L +Q C Sbjct: 37 VEGLVSANCPNVWSKYGGLERL---------CRDMQNILYHGLIHDQVCCRQADYWQFVK 87 Query: 253 -------SGAIFVAKEDALHEDD 206 A+ V K +LHE D Sbjct: 88 DIRWLSPHSALHVEKFISLHESD 110
>UVRA_STRMU (P72481) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 943 Score = 28.9 bits (63), Expect = 7.5 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Frame = -3 Query: 322 EIKESCGDSIHVEYHHLETNQFCSGAIFVAKEDALHEDDGWIISFVHDEGTNISQAHIID 143 E+ ++ +I V L G +F + E ALH DG++I D+ I H Sbjct: 192 ELSKNKMHNIEVVVDRLVQKDGIRGRLFDSIEAALHLGDGYVIIDTMDDHELIFSEHY-- 249 Query: 142 ARRFESGPVAKITLPQRVP--YGFHGAFVS 59 S PV T+P+ P + F+ F S Sbjct: 250 -----SCPVCGFTVPELEPRLFSFNAPFGS 274
>GYRB_HELPJ (Q9ZLX3) DNA gyrase subunit B (EC 5.99.1.3)| Length = 773 Score = 28.9 bits (63), Expect = 7.5 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Frame = -3 Query: 439 GLHHRYAYAXVVN-VEGSMAGGCGTVRPKFGGFAKLYLDQE---IKESCGDSIHVEYHHL 272 GLHH Y V N V+ SMAG C T+ + L +E I E G I V+ H Sbjct: 33 GLHHM-VYEVVDNAVDESMAGFCDTI--------NITLTEEGSCIVEDNGRGIPVDIHPT 83 Query: 271 ETNQFCSGAIFVAKEDALHEDDGWIIS-FVHDEGTNISQA 155 E C+ + + ++D + +S +H G ++ A Sbjct: 84 EKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSVVNA 123
>GCSPA_STAAS (Q6G930) Probable glycine dehydrogenase [decarboxylating] subunit 1| (EC 1.4.4.2) (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) Length = 451 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 360 QSLEVLQNYILTKKSRSLVEIQSMWSTTTLKQINSA 253 Q+L+VL Y T+K +VEI + T LK++ +A Sbjct: 170 QALQVLHTYAKTRKEFEVVEIDLDGTVTDLKKLEAA 205
>GCSPA_STAAR (Q6GGG3) Probable glycine dehydrogenase [decarboxylating] subunit 1| (EC 1.4.4.2) (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) Length = 451 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 360 QSLEVLQNYILTKKSRSLVEIQSMWSTTTLKQINSA 253 Q+L+VL Y T+K +VEI + T LK++ +A Sbjct: 170 QALQVLHTYAKTRKEFEVVEIDLDGTVTDLKKLEAA 205
>RF3_XANAC (Q8PI56) Peptide chain release factor 3 (RF-3)| Length = 534 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Frame = +1 Query: 199 SIHHPHVAHPLSPQKL--LLSRIDLFQGGGTPHGLNLHK----TP*FLGQDIVLQNLQTL 360 S+ P + + Q L L ++L QG P L+ ++ TP F G + +Q L Sbjct: 207 SLDAPGLVEKIGEQMLAELREELELVQGASNPFDLDAYRAGQQTPVFFGSGVNNFGVQPL 266 Query: 361 VSLFHNHQP 387 + F H P Sbjct: 267 LDFFVEHAP 275
>GCSPA_STAAW (Q8NWC9) Probable glycine dehydrogenase [decarboxylating] subunit 1| (EC 1.4.4.2) (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) Length = 448 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 360 QSLEVLQNYILTKKSRSLVEIQSMWSTTTLKQINSA 253 Q+L+VL Y T+K +VEI + T LK++ +A Sbjct: 167 QALQVLHTYAKTRKEFEVVEIDLDGTVTDLKKLEAA 202
>GCSPA_STAAN (P64218) Probable glycine dehydrogenase [decarboxylating] subunit 1| (EC 1.4.4.2) (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) Length = 448 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 360 QSLEVLQNYILTKKSRSLVEIQSMWSTTTLKQINSA 253 Q+L+VL Y T+K +VEI + T LK++ +A Sbjct: 167 QALQVLHTYAKTRKEFEVVEIDLDGTVTDLKKLEAA 202
>GCSPA_STAAM (P64217) Probable glycine dehydrogenase [decarboxylating] subunit 1| (EC 1.4.4.2) (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) Length = 448 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 360 QSLEVLQNYILTKKSRSLVEIQSMWSTTTLKQINSA 253 Q+L+VL Y T+K +VEI + T LK++ +A Sbjct: 167 QALQVLHTYAKTRKEFEVVEIDLDGTVTDLKKLEAA 202
>GCSPA_STAAC (Q5HFM3) Probable glycine dehydrogenase [decarboxylating] subunit 1| (EC 1.4.4.2) (Glycine decarboxylase subunit 1) (Glycine cleavage system P-protein subunit 1) Length = 448 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 360 QSLEVLQNYILTKKSRSLVEIQSMWSTTTLKQINSA 253 Q+L+VL Y T+K +VEI + T LK++ +A Sbjct: 167 QALQVLHTYAKTRKEFEVVEIDLDGTVTDLKKLEAA 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,154,703 Number of Sequences: 219361 Number of extensions: 1635681 Number of successful extensions: 4927 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4790 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4927 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
