Clone Name | rbasd2n14 |
---|---|
Clone Library Name | barley_pub |
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 33 gcttggatccgtacatggtcgttactcacgtctgcggagtccagggagcgtttggtta 90 |||| ||||||||||||||| |||||||| ||||||| ||||||||| |||||||| Sbjct: 15697 gctttgatccgtacatggtcattactcactcctgcggaaaccagggagcctttggtta 15640
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence Length = 285444 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 83 tttggttactggatgcaaccggtgagagacggcagcac 120 |||||||||||| ||||||||||| ||||||| ||||| Sbjct: 243799 tttggttactgggtgcaaccggtgggagacggtagcac 243762
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 52.0 bits (26), Expect = 0.002 Identities = 59/70 (84%) Strand = Plus / Plus Query: 33 gcttggatccgtacatggtcgttactcacgtctgcggagtccagggagcgtttggttact 92 |||||||||||||| ||| | |||||||| || ||| |||||||||| |||| ||||| Sbjct: 88128 gcttggatccgtacgtggcccttactcactcctatggactccagggagcctttgattact 88187 Query: 93 ggatgcaacc 102 || ||||||| Sbjct: 88188 gggtgcaacc 88197 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 296 ataaaatggctgcatgcatcaccacgatgcagaggccgg 334 |||||| ||| |||||||||| || |||||||||||||| Sbjct: 88397 ataaaagggccgcatgcatcatcatgatgcagaggccgg 88435
>gb|AY613782.1| Aegilops tauschii isolate TA2468 clone 2 HCBT-like putative PR gene, partial cds Length = 6062 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 32 tgcttggatccgtacatggtcgttac 57 |||||||||||||||||||||||||| Sbjct: 567 tgcttggatccgtacatggtcgttac 592 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Minus Query: 36 tggatccgtacatggtcgttactcacgtctgcggagtccagggagcgtttggttactgga 95 ||||||||||| ||||| |||||||| || || || ||||||| |||||||||||| Sbjct: 121 tggatccgtacgtggtccttactcactcctatagactctagggagcctttggttactggg 62 Query: 96 tgcaaccggtgagagacggcagcac 120 ||||||| ||| |||| || ||||| Sbjct: 61 tgcaaccagtgggagatggtagcac 37
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 32 tgcttggatccgtacatggtcgttac 57 |||||||||||||||||||||||||| Sbjct: 38933 tgcttggatccgtacatggtcgttac 38958 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Minus Query: 36 tggatccgtacatggtcgttactcacgtctgcggagtccagggagcgtttggttactgga 95 ||||||||||| ||||| |||||||| || || || ||||||| |||||||||||| Sbjct: 38488 tggatccgtacgtggtccttactcactcctatagactctagggagcctttggttactggg 38429 Query: 96 tgcaaccggtgagagacggcagcac 120 ||||||| ||| |||| || ||||| Sbjct: 38428 tgcaaccagtgggagatggtagcac 38404
>emb|AJ563452.1|TAE563452 Triticum aestivum agp2 gene for ADP-glucose pyrophosphorylase large subunit Length = 7725 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 67 cggagtccagggagcgtttggttactggat 96 ||||| |||||||||||||||||||||||| Sbjct: 352 cggaggccagggagcgtttggttactggat 323
>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence Length = 114996 Score = 50.1 bits (25), Expect = 0.009 Identities = 49/57 (85%) Strand = Plus / Plus Query: 38 gatccgtacatggtcgttactcacgtctgcggagtccagggagcgtttggttactgg 94 ||||| ||||||||| |||||||| ||||||| |||||||| |||||||||||| Sbjct: 59197 gatccatacatggtcattactcactcctgcggaaatcagggagcctttggttactgg 59253
>gb|AF509767.1| Hordeum vulgare subsp. vulgare isolate NRG021 Rpg1 region, genomic sequence Length = 2112 Score = 50.1 bits (25), Expect = 0.009 Identities = 46/53 (86%) Strand = Plus / Minus Query: 42 cgtacatggtcgttactcacgtctgcggagtccagggagcgtttggttactgg 94 |||||||||||||||||||| |||||| | ||||||| |||||||||||| Sbjct: 1352 cgtacatggtcgttactcactcctgcggcaactagggagcctttggttactgg 1300
>gb|AF325197.1|AF325197 Triticum aestivum LRK33 (Lrk33) and TAK33 (Tak33) genes, complete cds Length = 20754 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 68 ggagtccagggagcgtttggttactggat 96 |||| |||||||||||||||||||||||| Sbjct: 2797 ggaggccagggagcgtttggttactggat 2825
>dbj|AB058924.1| Hordeum vulgare gene for protein kinase HvPKABA1, complete cds, cultivar:Igri Length = 11684 Score = 48.1 bits (24), Expect = 0.036 Identities = 48/56 (85%) Strand = Plus / Minus Query: 38 gatccgtacatggtcgttactcacgtctgcggagtccagggagcgtttggttactg 93 |||||||||| ||||||||||||| | |||| ||||||||| ||||||||||| Sbjct: 4692 gatccgtacacggtcgttactcactcccgcggcaaccagggagcttttggttactg 4637
>gb|AF509748.1| Hordeum vulgare subsp. vulgare Morex barley stem rust resistance protein (Rpg1) gene, complete cds Length = 17974 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 296 ataaaatggctgcatgcatcaccacgatgcagaggccgg 334 |||||||||||||||||||| | |||||||||||||| Sbjct: 5272 ataaaatggctgcatgcatcttccagatgcagaggccgg 5234 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 gatccgtacatggtcgttact 58 ||||||||||||||||||||| Sbjct: 1282 gatccgtacatggtcgttact 1262
>emb|AL845352.7| Mouse DNA sequence from clone RP23-29A7 on chromosome 2, complete sequence Length = 196996 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 437 tttactatttccttgctgtctc 458 |||||||||||||||||||||| Sbjct: 14395 tttactatttccttgctgtctc 14374
>emb|CR626934.1| Triticum aestivum Length = 94398 Score = 42.1 bits (21), Expect = 2.2 Identities = 49/57 (85%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 296 ataaaatggctgcatgcatcaccacgatgcagaggccggagctc-tcctccttttct 351 |||||||||| | ||||||| || |||||||||||||| | || |||||||||||| Sbjct: 45795 ataaaatggccgtatgcatctcccagatgcagaggccgggggtcatcctccttttct 45851
>gb|AC117199.3| Mus musculus BAC clone RP23-134L22 from 10, complete sequence Length = 210514 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 567 aactaagatgcagtgctacaa 587 ||||||||||||||||||||| Sbjct: 104810 aactaagatgcagtgctacaa 104790
>gb|AC162908.4| Mus musculus BAC clone RP24-296A15 from chromosome 10, complete sequence Length = 170988 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 567 aactaagatgcagtgctacaa 587 ||||||||||||||||||||| Sbjct: 159254 aactaagatgcagtgctacaa 159234
>gb|AC010347.4| Homo sapiens chromosome 5 clone CTD-2018C9, complete sequence Length = 146638 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 gtctgagattgatatggccaa 201 ||||||||||||||||||||| Sbjct: 67599 gtctgagattgatatggccaa 67579
>dbj|AB073930.1| Thermoanaerobacter brockii treP gene for trehalose phosphorylase, complete cds Length = 3345 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 gcctttgtgttccagttgaac 265 ||||||||||||||||||||| Sbjct: 3115 gcctttgtgttccagttgaac 3135
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 67 cggagtccagggagcgtttggttactgg 94 ||||| ||||||||| |||||||||||| Sbjct: 184469 cggaggccagggagcatttggttactgg 184442
>ref|NM_015117.1| Homo sapiens zinc finger CCCH-type containing 3 (ZC3H3), mRNA Length = 3268 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tggtcatggaaggttgaggg 394 |||||||||||||||||||| Sbjct: 3023 tggtcatggaaggttgaggg 3004
>emb|CT009577.5| Mouse DNA sequence from clone RP23-24C24 on chromosome 16, complete sequence Length = 258862 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 gccggagctctcctcctttt 349 |||||||||||||||||||| Sbjct: 171050 gccggagctctcctcctttt 171069
>gb|AC124196.4| Mus musculus BAC clone RP23-296L12 from chromosome 13, complete sequence Length = 193553 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 189 ttgatatggccaagatatggccaa 212 ||||||||||||| |||||||||| Sbjct: 118451 ttgatatggccaatatatggccaa 118428
>gb|AC127292.4| Mus musculus BAC clone RP23-375J3 from chromosome 9, complete sequence Length = 157088 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tggatgacagcaaactaaca 158 |||||||||||||||||||| Sbjct: 14773 tggatgacagcaaactaaca 14792
>emb|X52103.1|TAEMG T.aestivum Em gene Length = 2465 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 ataaaatggctgcatgcatc 315 |||||||||||||||||||| Sbjct: 824 ataaaatggctgcatgcatc 843
>emb|CR723903.2|CNS0GLID Tetraodon nigroviridis full-length cDNA Length = 826 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ctttgtgttccagttgaacc 266 |||||||||||||||||||| Sbjct: 620 ctttgtgttccagttgaacc 601
>emb|CR721310.2|CNS0GJIC Tetraodon nigroviridis full-length cDNA Length = 857 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ctttgtgttccagttgaacc 266 |||||||||||||||||||| Sbjct: 646 ctttgtgttccagttgaacc 627
>emb|CR718373.2|CNS0GH8R Tetraodon nigroviridis full-length cDNA Length = 850 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ctttgtgttccagttgaacc 266 |||||||||||||||||||| Sbjct: 646 ctttgtgttccagttgaacc 627
>emb|CR679853.2|CNS0FNIX Tetraodon nigroviridis full-length cDNA Length = 827 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ctttgtgttccagttgaacc 266 |||||||||||||||||||| Sbjct: 621 ctttgtgttccagttgaacc 602
>gb|AC163650.2| Mus musculus BAC clone RP24-383A20 from chromosome 13, complete sequence Length = 210177 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 616 accttgaactctcaatctct 635 |||||||||||||||||||| Sbjct: 20137 accttgaactctcaatctct 20118
>emb|CR647884.2|CNS0EYVM Tetraodon nigroviridis full-length cDNA Length = 824 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 ctttgtgttccagttgaacc 266 |||||||||||||||||||| Sbjct: 629 ctttgtgttccagttgaacc 610
>gb|AF528749.1| Uranoscodon superciliosus NADH dehydrogenase subunit 1 (ND1) gene, partial cds; tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; and cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial genes for mitochondrial products Length = 1737 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 481 ctaatcttaggagaactaattgcc 504 |||||||||| ||||||||||||| Sbjct: 1086 ctaatcttagaagaactaattgcc 1109
>emb|CR352340.10| Zebrafish DNA sequence from clone CH211-191L23 in linkage group 17, complete sequence Length = 145947 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 tgaataattcaactcttcat 437 |||||||||||||||||||| Sbjct: 84270 tgaataattcaactcttcat 84289
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 tttgatatttgaaaacagtg 565 |||||||||||||||||||| Sbjct: 1980818 tttgatatttgaaaacagtg 1980799
>gb|AC159895.2| Mus musculus BAC clone RP23-260J19 from chromosome 9, complete sequence Length = 191882 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tggatgacagcaaactaaca 158 |||||||||||||||||||| Sbjct: 102844 tggatgacagcaaactaaca 102863
>gb|BC038670.1| Homo sapiens zinc finger CCCH-type containing 3, mRNA (cDNA clone MGC:43116 IMAGE:5260824), complete cds Length = 3268 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tggtcatggaaggttgaggg 394 |||||||||||||||||||| Sbjct: 3023 tggtcatggaaggttgaggg 3004
>emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chromosome 11 Contains the 5' end of a novel gene, three novel genes, the Slc6a4 gene for solute carrier family 6 (neurotransmitter transporter, serotonin) member 4, the Blmh gene for bleomycin hydrolase and three CpG islands, complete sequence Length = 229289 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 gagctctcctccttttcttc 353 |||||||||||||||||||| Sbjct: 113837 gagctctcctccttttcttc 113856
>gb|AC093430.3| Homo sapiens chromosome 1 clone RP11-171B15, complete sequence Length = 153414 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 432 cttcatttactatttccttgctgt 455 ||||||| |||||||||||||||| Sbjct: 119276 cttcattcactatttccttgctgt 119253
>dbj|D63484.1| Homo sapiens mRNA for KIAA0150 gene, partial cds Length = 3231 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tggtcatggaaggttgaggg 394 |||||||||||||||||||| Sbjct: 3000 tggtcatggaaggttgaggg 2981
>gb|AC023281.13| Homo sapiens 12p BAC RP11-780A5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 145410 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 428 aactcttcatttactatttccttgctgt 455 |||||||| ||| ||||||||||||||| Sbjct: 16388 aactcttcctttgctatttccttgctgt 16415
>emb|BX548068.13| Zebrafish DNA sequence from clone DKEYP-53E7 in linkage group 10, complete sequence Length = 177449 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 ctttatttgaacttgtttgt 291 |||||||||||||||||||| Sbjct: 3945 ctttatttgaacttgtttgt 3926
>gb|AC091108.5| Homo sapiens chromosome 18, clone RP11-765H19, complete sequence Length = 164790 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 492 agaactaattgccaagtgcctaat 515 |||||||||||| ||||||||||| Sbjct: 48988 agaactaattgcaaagtgcctaat 49011
>gb|AC154736.2| Mus musculus BAC clone RP24-389J14 from chromosome 16, complete sequence Length = 141092 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 gccggagctctcctcctttt 349 |||||||||||||||||||| Sbjct: 93967 gccggagctctcctcctttt 93986
>gb|BC034435.1| Homo sapiens zinc finger CCCH-type containing 3, mRNA (cDNA clone IMAGE:5166541), complete cds Length = 1827 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tggtcatggaaggttgaggg 394 |||||||||||||||||||| Sbjct: 1548 tggtcatggaaggttgaggg 1529
>gb|AC102391.12| Mus musculus chromosome 18, clone RP24-62K22, complete sequence Length = 196455 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 actatttccttgctgtctct 459 |||||||||||||||||||| Sbjct: 106939 actatttccttgctgtctct 106958
>emb|BX005336.10| Zebrafish DNA sequence from clone DKEY-85K7 in linkage group 7, complete sequence Length = 233826 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 acagtgcaactaagatgcag 579 |||||||||||||||||||| Sbjct: 110531 acagtgcaactaagatgcag 110550
>gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, complete sequence Length = 179941 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tggtcatggaaggttgaggg 394 |||||||||||||||||||| Sbjct: 107873 tggtcatggaaggttgaggg 107892
>ref|XM_221016.2| PREDICTED: Rattus norvegicus wingless-type MMTV integration site family, member 3 (Wnt3), mRNA Length = 2229 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 377 gtcatggaaggttgaggggt 396 |||||||||||||||||||| Sbjct: 278 gtcatggaaggttgaggggt 297
>ref|XM_560172.1| Anopheles gambiae str. PEST ENSANGP00000029630 (ENSANGG00000016129), partial mRNA Length = 627 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 571 aagatgcagtgctacaagattaaa 594 |||||||||||| ||||||||||| Sbjct: 520 aagatgcagtgccacaagattaaa 543
>ref|XM_309145.2| Anopheles gambiae str. PEST ENSANGP00000025319 (ENSANGG00000016129), partial mRNA Length = 1322 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 571 aagatgcagtgctacaagattaaa 594 |||||||||||| ||||||||||| Sbjct: 1027 aagatgcagtgccacaagattaaa 1050
>ref|XM_309146.2| Anopheles gambiae str. PEST ENSANGP00000018618 (ENSANGG00000016129), partial mRNA Length = 1451 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 571 aagatgcagtgctacaagattaaa 594 |||||||||||| ||||||||||| Sbjct: 1156 aagatgcagtgccacaagattaaa 1179
>emb|BX284111.7| Mouse DNA sequence from clone RP23-217B8 on chromosome X, complete sequence Length = 223318 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 atagtctgagattgatatgg 197 |||||||||||||||||||| Sbjct: 83462 atagtctgagattgatatgg 83443
>emb|AL683816.6| Mouse DNA sequence from clone RP23-120E8 on chromosome 4, complete sequence Length = 216639 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 tgagagacggcagcacaaaccatg 128 ||||| |||||||||||||||||| Sbjct: 58272 tgagaaacggcagcacaaaccatg 58249
>gb|BC001974.1| Homo sapiens cDNA clone IMAGE:3457069, partial cds Length = 2445 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 tggtcatggaaggttgaggg 394 |||||||||||||||||||| Sbjct: 1663 tggtcatggaaggttgaggg 1644 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,529,053 Number of Sequences: 3902068 Number of extensions: 5529053 Number of successful extensions: 109869 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 109753 Number of HSP's gapped (non-prelim): 114 length of query: 637 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 614 effective length of database: 17,143,297,704 effective search space: 10525984790256 effective search space used: 10525984790256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)