ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2n10 |
|---|---|
| Clone Library Name | barley_pub |
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 37.7 bits (86), Expect = 0.038 Identities = 23/69 (33%), Positives = 33/69 (47%) Frame = -2 Query: 735 QLLYTPKVDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAAT 556 Q + T + PSSS +G PS+ A + S T P+ P + T IP +LT AT Sbjct: 3866 QPVATGSMATPSSSTQTSGTPPSLITTATTITATGSTTNPSSTPGT--TPIPPELTTTAT 3923 Query: 555 APVDVASAL 529 P +S + Sbjct: 3924 TPAATSSTV 3932 Score = 36.6 bits (83), Expect = 0.085 Identities = 22/65 (33%), Positives = 30/65 (46%) Frame = -2 Query: 723 TPKVDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVD 544 T + PSSS +G PS+ A + S T P+ P + T IP LT AT P Sbjct: 3341 TGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTTTATTPAA 3398 Query: 543 VASAL 529 +S + Sbjct: 3399 TSSTV 3403 Score = 36.6 bits (83), Expect = 0.085 Identities = 22/65 (33%), Positives = 30/65 (46%) Frame = -2 Query: 723 TPKVDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVD 544 T + PSSS +G PS+ A + S T P+ P + T IP LT AT P Sbjct: 2114 TGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTTTATTPAA 2171 Query: 543 VASAL 529 +S + Sbjct: 2172 TSSTV 2176 Score = 35.0 bits (79), Expect = 0.25 Identities = 22/63 (34%), Positives = 29/63 (46%) Frame = -2 Query: 723 TPKVDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVD 544 T + PSSS +G PS+ A + S T P+ P + T IP LT AT P Sbjct: 4602 TGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--TPIPPVLTSMATTPAA 4659 Query: 543 VAS 535 +S Sbjct: 4660 TSS 4662 Score = 34.3 bits (77), Expect = 0.42 Identities = 21/65 (32%), Positives = 29/65 (44%) Frame = -2 Query: 723 TPKVDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAPVD 544 T + PSSS +G PS+ A + S T P+ P + IP LT AT P Sbjct: 2643 TGSMATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT--RPIPPVLTTTATTPAA 2700 Query: 543 VASAL 529 +S + Sbjct: 2701 TSSTV 2705
>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 894 Score = 34.3 bits (77), Expect = 0.42 Identities = 17/41 (41%), Positives = 25/41 (60%) Frame = -2 Query: 372 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 250 L+A L EMGF DR+ N +LL K+ +I + V +L+ D Sbjct: 848 LMAHLFEMGFCDRQLNLQLLKKHNYNILQVVTELLQLNNND 888
>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein| A1U) Length = 601 Score = 33.9 bits (76), Expect = 0.55 Identities = 40/161 (24%), Positives = 59/161 (36%) Frame = -2 Query: 741 LQQLLYTPKVDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVA 562 +QQ L T + + P G VPS+ P PSA + A TS P T A Sbjct: 472 IQQGLQTLQTEAP-------GLVPSLGSFGISRTPAPSAGSNAGSTPEAPTSSPA--TPA 522 Query: 561 ATAPVDVASALLDIDRXXXXXXXXXXXEMGFKQVDLNKEILRQNKYNLEQSVDDLCGVNE 382 ++P +SA + + G QV + +Q Sbjct: 523 TSSPTGASSAQQQLMQQMIQLLAGS----GNSQVQTPEVRFQQQ---------------- 562 Query: 381 WDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 259 L +L+ MGF +RE N + L GG I A+ L+ + Sbjct: 563 ----LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 599
>DSK2_SCHPO (Q10169) Deubiquitination-protection protein dph1| Length = 354 Score = 33.9 bits (76), Expect = 0.55 Identities = 14/35 (40%), Positives = 26/35 (74%) Frame = -2 Query: 369 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 265 L++L+EMGF D E N + L ++GG+++ A+ L++ Sbjct: 318 LSQLNEMGFVDFERNVQALRRSGGNVQGAIESLLS 352
>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) Length = 983 Score = 33.5 bits (75), Expect = 0.72 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = -2 Query: 372 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 250 L+A L EMGF DR+ N LL K+ +I + V +L+ D Sbjct: 937 LMAHLFEMGFCDRQLNLRLLRKHNHNILQVVTELLQVNNND 977
>CPN_DROME (Q02910) Calphotin| Length = 864 Score = 33.5 bits (75), Expect = 0.72 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%) Frame = -2 Query: 714 VDVPSSSENAAGFVPSVNVLAPEVI--PEPSATTPAEVPTSLLTSIPVDLTVAATAPV 547 V +P+ + AA V V +AP V+ P P A +P P + IPV ++ PV Sbjct: 62 VTIPAPAPIAAASVAPVASVAPPVVAAPTPPAASPVSTPPVAVAQIPVAVSAPVAPPV 119 Score = 31.2 bits (69), Expect = 3.6 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 9/66 (13%) Frame = -2 Query: 705 PSSSENAAGFVPS-----VNVLAPEVIPE----PSATTPAEVPTSLLTSIPVDLTVAATA 553 P S+ AA PS V V++P + P A TP P +L + P +T+ A A Sbjct: 9 PVSAPVAAPVTPSAVAAPVQVVSPAAVAPAPAAPIAVTPVAPPPTLASVQPATVTIPAPA 68 Query: 552 PVDVAS 535 P+ AS Sbjct: 69 PIAAAS 74
>KLF5_MOUSE (Q9Z0Z7) Krueppel-like factor 5 (Intestinal-enriched krueppel-like| factor) (Transcription factor BTEB2) (Basic transcription element-binding protein 2) (BTE-binding protein 2) Length = 446 Score = 33.5 bits (75), Expect = 0.72 Identities = 18/40 (45%), Positives = 25/40 (62%) Frame = -2 Query: 744 HLQQLLYTPKVDVPSSSENAAGFVPSVNVLAPEVIPEPSA 625 HL QLL TP +D+PSS+ N + ++NV + P PSA Sbjct: 220 HLYQLLNTPDLDMPSST-NQTAVMDTLNVSMAGLNPHPSA 258
>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) (1A1-3B) Length = 966 Score = 33.5 bits (75), Expect = 0.72 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = -2 Query: 372 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 250 L+A L EMGF DR+ N LL K+ +I + V +L+ D Sbjct: 920 LMARLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND 960
>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 33.1 bits (74), Expect = 0.94 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%) Frame = -2 Query: 420 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 265 ++Q + L GVN + L +LS MGF +RE N + L GG I A+ L+ Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 578 Query: 264 RE 259 + Sbjct: 579 SQ 580
>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) Length = 582 Score = 33.1 bits (74), Expect = 0.94 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%) Frame = -2 Query: 420 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 265 ++Q + L GVN + L +LS MGF +RE N + L GG I A+ L+ Sbjct: 519 IQQMLQALAGVNPQLQSPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 578 Query: 264 RE 259 + Sbjct: 579 SQ 580
>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) Length = 988 Score = 33.1 bits (74), Expect = 0.94 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = -2 Query: 372 LLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 250 L+A L EMGF DR+ N LL K+ +I + V +L+ D Sbjct: 942 LMAHLFEMGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982
>UBQL1_HUMAN (Q9UMX0) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)| (PLIC-1) (hPLIC-1) Length = 589 Score = 33.1 bits (74), Expect = 0.94 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 8/62 (12%) Frame = -2 Query: 420 LEQSVDDLCGVN--------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIA 265 ++Q + L GVN + L +LS MGF +RE N + L GG I A+ L+ Sbjct: 526 IQQMLQALAGVNPQLQNPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLG 585 Query: 264 RE 259 + Sbjct: 586 SQ 587
>BORG5_MOUSE (Q91W92) Cdc42 effector protein 1 (Binder of Rho GTPases 5)| Length = 409 Score = 32.3 bits (72), Expect = 1.6 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -2 Query: 675 VPSVNVLAPEVIPEPSATTPAEVPTSL--LTSIPVDLTVAATAPVDVAS 535 VP+ N AP P P+A PA T+L +TS+P + AP +S Sbjct: 241 VPTANPPAPAANPAPTAKPPAHAITTLDAVTSLPASAVTSLPAPAAASS 289
>UBQL2_HUMAN (Q9UHD9) Ubiquilin-2 (Protein linking IAP with cytoskeleton 2)| (PLIC-2) (hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog) (Chap1) Length = 624 Score = 32.3 bits (72), Expect = 1.6 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%) Frame = -2 Query: 432 NKYNLEQSVDDLCGVN---------EWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 280 N+ ++Q V L G N + L +L+ MGF +RE N + L GG I A+ Sbjct: 556 NQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAI 615 Query: 279 MDLIARE 259 L+ + Sbjct: 616 ERLLGSQ 622
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 31.2 bits (69), Expect = 3.6 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = -2 Query: 717 KVDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAP 550 ++ VP+S ++ PSV+ +A +P P+ TP PTS TS+ + ++ AP Sbjct: 432 RLGVPTSMQSNG---PSVSSVASSSVPSPA--TPTLTPTSTATSMSTSVPTSSPAP 482
>MT1_CANGA (P15113) Metallothionein-1 (MT-1) (Metallothionein-I) (MT-I)| Length = 62 Score = 31.2 bits (69), Expect = 3.6 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = -1 Query: 691 KCSWFCAKC*CTCTGSHSGTFCDYTR*SAHKFAY*YPCGSD-RSCNRTCGCG 539 KC C+ C G G C+ + S H CGS SC+ +CGCG Sbjct: 5 KCPNGCSCPNCANGGCQCGDKCECKKQSCHGCGEQCKCGSHGSSCHGSCGCG 56
>UBL7_MOUSE (Q91W67) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)| Length = 380 Score = 31.2 bits (69), Expect = 3.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 387 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 280 ++W P L +L +MG D E + L GG I+ A+ Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAAL 371
>UBL7_HUMAN (Q96S82) Ubiquitin-like protein 7 (Ubiquitin-like protein SB132)| (Bone marrow stromal cell ubiquitin-like protein) (BMSC-UbP) Length = 380 Score = 31.2 bits (69), Expect = 3.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 387 NEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAV 280 ++W P L +L +MG D E + L GG I+ A+ Sbjct: 336 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAAL 371
>ZN161_HUMAN (Q14119) Zinc finger protein 161 (Putative transcription factor| DB1) Length = 516 Score = 31.2 bits (69), Expect = 3.6 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = -2 Query: 669 SVNVLAPEVIPEP-SATTPAEVPTSLLTSIPVDLTVAATAPVDVA 538 +VN+ +P I P + T+P + + L + PV+L TAPV++A Sbjct: 428 AVNITSPMNIGHPVTITSPLSMTSPLTLTTPVNLPTPVTAPVNIA 472
>UN13B_HUMAN (O14795) Unc-13 homolog B (Munc13-2) (munc13)| Length = 1591 Score = 30.8 bits (68), Expect = 4.6 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +2 Query: 41 GTEQLSRLQQPHAADPPRSQHNKVHTAHRSHT 136 G+ QLS L Q H D + + +H+ H SH+ Sbjct: 270 GSSQLSELDQYHEQDDDHRETDSIHSCHSSHS 301
>BIN1_HUMAN (O00499) Myc box-dependent-interacting protein 1 (Bridging| integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-interacting protein 1) Length = 593 Score = 30.8 bits (68), Expect = 4.6 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Frame = -2 Query: 726 YTPKVDV--PSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATA 553 + P++ V PS E F ++L + P P T+P + PT SIP DL + Sbjct: 366 FVPEISVTTPSQFEAPGPFSEQASLLDLDFDPLPPVTSPVKAPTPSGQSIPWDLWEPTES 425 Query: 552 P 550 P Sbjct: 426 P 426
>GTS1_YEAST (P40956) Protein GTS1 (Protein LSR1)| Length = 396 Score = 30.8 bits (68), Expect = 4.6 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -2 Query: 369 LAELSEMGFDDRETNKELLAKNGGSIKRAV 280 LAEL +MGF D N + L+ G+I RA+ Sbjct: 199 LAELKDMGFGDTNKNLDALSSAHGNINRAI 228
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 30.8 bits (68), Expect = 4.6 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +2 Query: 47 EQLSRLQQPHAADPPRSQHNKVHTAHRSHT 136 +Q S+LQ PH+ PP QH + H H+ T Sbjct: 406 QQHSQLQPPHSQHPPPHQHIQHHPNHQHQT 435
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 30.4 bits (67), Expect = 6.1 Identities = 16/58 (27%), Positives = 26/58 (44%) Frame = -2 Query: 723 TPKVDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPTSLLTSIPVDLTVAATAP 550 T P++S + P+ + +P P S T+P PT+ TS T + T+P Sbjct: 1441 TTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSP 1498
>UBQL4_MOUSE (Q99NB8) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein| A1U) Length = 596 Score = 30.4 bits (67), Expect = 6.1 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = -2 Query: 369 LAELSEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 259 L +L+ MGF +RE N + L GG I A+ L+ + Sbjct: 558 LEQLNSMGFINREANLQALIATGGDINAAIERLLGSQ 594
>SYM_STRR6 (P67581) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 665 Score = 30.4 bits (67), Expect = 6.1 Identities = 24/68 (35%), Positives = 34/68 (50%) Frame = -2 Query: 456 LNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVM 277 LN+ + NKY Q + GV E+D +LAE++E D T+ E A + AV Sbjct: 369 LNRTVSMINKYFDGQIPAYVEGVTEFDHVLAEVAEQSIADFHTHME--AVDYPRALEAVW 426 Query: 276 DLIAREKK 253 LI+R K Sbjct: 427 TLISRTNK 434
>SYM_STRPN (P67580) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA| ligase) (MetRS) Length = 665 Score = 30.4 bits (67), Expect = 6.1 Identities = 24/68 (35%), Positives = 34/68 (50%) Frame = -2 Query: 456 LNKEILRQNKYNLEQSVDDLCGVNEWDPLLAELSEMGFDDRETNKELLAKNGGSIKRAVM 277 LN+ + NKY Q + GV E+D +LAE++E D T+ E A + AV Sbjct: 369 LNRTVSMINKYFDGQIPAYVEGVTEFDHVLAEVAEQSIADFHTHME--AVDYPRALEAVW 426 Query: 276 DLIAREKK 253 LI+R K Sbjct: 427 TLISRTNK 434
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 30.0 bits (66), Expect = 7.9 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = -2 Query: 738 QQLLYT--PKVDVPSSSENAAGFVPSVNVLAPEVIPEPSATTPAEVPT--SLLTSIPVDL 571 QQ+L T P + PS + +A P P P PSATT VP S TS P + Sbjct: 730 QQMLQTQPPALQAPSGAASAPSTAPPGTTQLPTPGPTPSATT---VPPQGSPATSQPPNQ 786 Query: 570 TVAATAP 550 T + AP Sbjct: 787 TQSTVAP 793 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,836,106 Number of Sequences: 219361 Number of extensions: 2102325 Number of successful extensions: 7033 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 6528 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7006 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7819576386 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
