Clone Name | rbasd3c07 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ310379.1|HVU310379 Hordeum vulgare mRNA for putative nuclear protein (s40 gene) Length = 417 Score = 823 bits (415), Expect = 0.0 Identities = 415/415 (100%) Strand = Plus / Minus Query: 122 tcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtcccg 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 417 tcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtcccg 358 Query: 182 ccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtcgacctcccggc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 357 ccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtcgacctcccggc 298 Query: 242 gagcctccgccgtcgctcggccaggacgtggggcggcacgttcctcttcgcgtcgttggt 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 297 gagcctccgccgtcgctcggccaggacgtggggcggcacgttcctcttcgcgtcgttggt 238 Query: 302 acatcggacgtcgccgtcgctgcagtcgtcgttgccactgccgctcccgtcggacgacgc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 237 acatcggacgtcgccgtcgctgcagtcgtcgttgccactgccgctcccgtcggacgacgc 178 Query: 362 cgtccaggatcgagaccgccgcttccggagaggcacgaggaccggggcagacagctccgg 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 177 cgtccaggatcgagaccgccgcttccggagaggcacgaggaccggggcagacagctccgg 118 Query: 422 cggggacaccttggcgatgtctccgtcgacgttgctgccgtcgtcgccgtcgcggcggtg 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117 cggggacaccttggcgatgtctccgtcgacgttgctgccgtcgtcgccgtcgcggcggtg 58 Query: 482 ctcggagttgtagtgtggccagaggacgtcggcttcttggagctcctgatgatcc 536 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57 ctcggagttgtagtgtggccagaggacgtcggcttcttggagctcctgatgatcc 3
>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05, complete sequence Length = 196284 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 121 ttcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtccc 180 |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 13006 ttcatttctcgatgaatccggtcatctggaggacgaggttcctgacgttgcggaggtccc 12947 Query: 181 gccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtc 230 ||||||||||||||||||| ||||||| |||||||||||| ||||||||| Sbjct: 12946 gccctttgagcgtcctccccttgccggcgcacatggagtacgccgccgtc 12897
>gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1131_E09, complete sequence Length = 94399 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 121 ttcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtccc 180 |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 79298 ttcatttctcgatgaatccggtcatctggaggacgaggttcctgacgttgcggaggtccc 79239 Query: 181 gccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtc 230 ||||||||||||||||||| ||||||| |||||||||||| ||||||||| Sbjct: 79238 gccctttgagcgtcctccccttgccggcgcacatggagtacgccgccgtc 79189
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 121 ttcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtccc 180 |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 26161958 ttcatttctcgatgaatccggtcatctggaggacgaggttcctgacgttgcggaggtccc 26161899 Query: 181 gccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtc 230 ||||||||||||||||||| ||||||| |||||||||||| ||||||||| Sbjct: 26161898 gccctttgagcgtcctccccttgccggcgcacatggagtacgccgccgtc 26161849 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 498 ggccagaggacgtcggcttcttggagctcct 528 ||||||||||||||||||||||||| ||||| Sbjct: 25548306 ggccagaggacgtcggcttcttggaactcct 25548276
>dbj|AK109325.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-H07, full insert sequence Length = 744 Score = 155 bits (78), Expect = 2e-34 Identities = 102/110 (92%) Strand = Plus / Minus Query: 121 ttcacttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtccc 180 |||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 475 ttcatttctcgatgaatccggtcatctggaggacgaggttcctgacgttgcggaggtccc 416 Query: 181 gccctttgagcgtcctccctttgccggtgcacatggagtaggccgccgtc 230 ||||||||||||||||||| ||||||| |||||||||||| ||||||||| Sbjct: 415 gccctttgagcgtcctccccttgccggcgcacatggagtacgccgccgtc 366
>ref|XM_475741.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 429 Score = 153 bits (77), Expect = 7e-34 Identities = 98/105 (93%) Strand = Plus / Minus Query: 126 ttctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtcccgccct 185 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 425 ttctcgatgaatccggtcatctggaggacgaggttcctgacgttgcggaggtcccgccct 366 Query: 186 ttgagcgtcctccctttgccggtgcacatggagtaggccgccgtc 230 |||||||||||||| ||||||| |||||||||||| ||||||||| Sbjct: 365 ttgagcgtcctccccttgccggcgcacatggagtacgccgccgtc 321
>gb|AY112488.1| Zea mays CL43678_1 mRNA sequence Length = 595 Score = 109 bits (55), Expect = 9e-21 Identities = 91/103 (88%) Strand = Plus / Plus Query: 128 ctcgatgaatccggtcatcctgaggacgaggttcctgatattgcggaggtcccgcccttt 187 ||||||||| || |||||| |||||||||||| || || | ||||||||| |||||||| Sbjct: 248 ctcgatgaagcctgtcatcttgaggacgaggtcccggacgtcgcggaggtcgcgcccttt 307 Query: 188 gagcgtcctccctttgccggtgcacatggagtaggccgccgtc 230 |||||||||||| ||||| | |||||||||||||||||||||| Sbjct: 308 gagcgtcctccccttgccagcgcacatggagtaggccgccgtc 350
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04, complete sequence Length = 169073 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 498 ggccagaggacgtcggcttcttggagctcct 528 ||||||||||||||||||||||||| ||||| Sbjct: 64713 ggccagaggacgtcggcttcttggaactcct 64683
>ref|XM_477770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 474 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 310 cgtcgccgtcgctgcagtcgtcgttgccact 340 ||||||||||||| |||||||||| |||||| Sbjct: 110 cgtcgccgtcgctccagtcgtcgtcgccact 80
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 310 cgtcgccgtcgctgcagtcgtcgttgccact 340 ||||||||||||| |||||||||| |||||| Sbjct: 14042424 cgtcgccgtcgctccagtcgtcgtcgccact 14042394
>dbj|AP003830.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1423_A11 Length = 98377 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 310 cgtcgccgtcgctgcagtcgtcgttgccact 340 ||||||||||||| |||||||||| |||||| Sbjct: 18383 cgtcgccgtcgctccagtcgtcgtcgccact 18353
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 170 gcggaggtcccgccctttgagcgtcctccc 199 ||||||||| ||||| |||||||||||||| Sbjct: 760077 gcggaggtcgcgccccttgagcgtcctccc 760048 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||| |||||||||| Sbjct: 25509304 cgtcgccgtcgctccagtcgtcgt 25509327
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 460 cgtcgtcgccgtcgcggcggtgctcg 485 |||||||||||| ||||||||||||| Sbjct: 13229356 cgtcgtcgccgtggcggcggtgctcg 13229381 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||| |||||||||| Sbjct: 15954056 cgtcgccgtcgctccagtcgtcgt 15954079 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 gctgccgtcgtcgccgtcgc 474 |||||||||||||||||||| Sbjct: 8505803 gctgccgtcgtcgccgtcgc 8505822
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 170 gcggaggtcccgccctttgagcgtcctccc 199 ||||||||| ||||| |||||||||||||| Sbjct: 760075 gcggaggtcgcgccccttgagcgtcctccc 760046 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||| |||||||||| Sbjct: 25600613 cgtcgccgtcgctccagtcgtcgt 25600636
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 170 gcggaggtcccgccctttgagcgtcctccc 199 ||||||||| ||||| |||||||||||||| Sbjct: 55622 gcggaggtcgcgccccttgagcgtcctccc 55593
>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0005F16, complete sequence Length = 160053 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 170 gcggaggtcccgccctttgagcgtcctccc 199 ||||||||| ||||| |||||||||||||| Sbjct: 145958 gcggaggtcgcgccccttgagcgtcctccc 145929
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 460 cgtcgtcgccgtcgcggcggtgctcg 485 |||||||||||| ||||||||||||| Sbjct: 146544 cgtcgtcgccgtggcggcggtgctcg 146569
>dbj|AK119700.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-D07, full insert sequence Length = 777 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 170 gcggaggtcccgccctttgagcgtcctccc 199 ||||||||| ||||| |||||||||||||| Sbjct: 655 gcggaggtcgcgccccttgagcgtcctccc 626
>dbj|AK107900.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-F07, full insert sequence Length = 804 Score = 44.1 bits (22), Expect = 0.47 Identities = 28/30 (93%) Strand = Plus / Minus Query: 170 gcggaggtcccgccctttgagcgtcctccc 199 ||||||||| ||||| |||||||||||||| Sbjct: 655 gcggaggtcgcgccccttgagcgtcctccc 626
>dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D06, full insert sequence Length = 1439 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Plus Query: 460 cgtcgtcgccgtcgcggcggtgctcg 485 |||||||||||| ||||||||||||| Sbjct: 375 cgtcgtcgccgtggcggcggtgctcg 400
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 44.1 bits (22), Expect = 0.47 Identities = 25/26 (96%) Strand = Plus / Minus Query: 451 cgttgctgccgtcgtcgccgtcgcgg 476 |||||||| ||||||||||||||||| Sbjct: 1133223 cgttgctgtcgtcgtcgccgtcgcgg 1133198
>ref|NM_001018111.1| Homo sapiens podocalyxin-like (PODXL), transcript variant 1, mRNA Length = 5999 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 tgctgccgtcgtcgccgtcgc 474 ||||||||||||||||||||| Sbjct: 306 tgctgccgtcgtcgccgtcgc 326
>ref|NM_005397.2| Homo sapiens podocalyxin-like (PODXL), transcript variant 2, mRNA Length = 5903 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 tgctgccgtcgtcgccgtcgc 474 ||||||||||||||||||||| Sbjct: 306 tgctgccgtcgtcgccgtcgc 326
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 acatggagtaggccgccgtcgacct 235 |||||||| |||||||||||||||| Sbjct: 17553 acatggagaaggccgccgtcgacct 17529
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 acatggagtaggccgccgtcgacct 235 |||||||| |||||||||||||||| Sbjct: 48353 acatggagaaggccgccgtcgacct 48329
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 313 cgccgtcgctgcagtcgtcgttgcc 337 |||||||||| |||||||||||||| Sbjct: 11615952 cgccgtcgctccagtcgtcgttgcc 11615976
>dbj|AK223573.1| Homo sapiens mRNA for podocalyxin-like precursor variant, clone: FCC129D02 Length = 2056 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 tgctgccgtcgtcgccgtcgc 474 ||||||||||||||||||||| Sbjct: 306 tgctgccgtcgtcgccgtcgc 326
>gb|BC093730.1| Homo sapiens podocalyxin-like, mRNA (cDNA clone MGC:120765 IMAGE:7939575), complete cds Length = 1672 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 tgctgccgtcgtcgccgtcgc 474 ||||||||||||||||||||| Sbjct: 76 tgctgccgtcgtcgccgtcgc 96
>gb|AC008264.10|AC008264 Homo sapiens chromosome 7 clone RP11-180C16, complete sequence Length = 162694 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 tgctgccgtcgtcgccgtcgc 474 ||||||||||||||||||||| Sbjct: 65765 tgctgccgtcgtcgccgtcgc 65745
>gb|BC042466.1| Homo sapiens, Similar to podocalyxin-like, clone IMAGE:5172924, mRNA Length = 6199 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 tgctgccgtcgtcgccgtcgc 474 ||||||||||||||||||||| Sbjct: 260 tgctgccgtcgtcgccgtcgc 280
>emb|X94677.1|BHV1ULGNS Bovine herpesvirus type 1 genes for UL[27,28,29,30,31] Length = 10500 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 acatggagtaggccgccgtcgacct 235 |||||||| |||||||||||||||| Sbjct: 3277 acatggagaaggccgccgtcgacct 3253
>gb|BC112035.1| Homo sapiens podocalyxin-like, transcript variant 2, mRNA (cDNA clone MGC:138240 IMAGE:8327503), complete cds Length = 1684 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 tgctgccgtcgtcgccgtcgc 474 ||||||||||||||||||||| Sbjct: 88 tgctgccgtcgtcgccgtcgc 108
>gb|AY395058.1| Schistosoma mansoni ecdysone-induced protein E78 (E78) mRNA, complete cds Length = 1864 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 gtcgttgccactgccgctccc 349 ||||||||||||||||||||| Sbjct: 1385 gtcgttgccactgccgctccc 1365
>emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09, complete sequence Length = 164911 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 313 cgccgtcgctgcagtcgtcgttgcc 337 |||||||||| |||||||||||||| Sbjct: 98962 cgccgtcgctccagtcgtcgttgcc 98986
>gb|U97519.1|HSU97519 Homo sapiens podocalyxin-like protein mRNA, complete cds Length = 5869 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 tgctgccgtcgtcgccgtcgc 474 ||||||||||||||||||||| Sbjct: 306 tgctgccgtcgtcgccgtcgc 326
>ref|XM_550259.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1929 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cgtcgtcgccgtcgcggcgg 479 |||||||||||||||||||| Sbjct: 118 cgtcgtcgccgtcgcggcgg 99
>ref|XM_469110.1| Oryza sativa (japonica cultivar-group), mRNA Length = 357 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||| |||||||||| Sbjct: 307 cgtcgccgtcgctccagtcgtcgt 284
>ref|NM_183749.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 648 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 310 cgtcgccgtcgctgcagtcgtcgttgcc 337 ||||||||||||| | |||||||||||| Sbjct: 552 cgtcgccgtcgctccggtcgtcgttgcc 525
>gb|AC159423.1| Trypanosoma brucei chromosome 8 clone RPCI93-26E13, complete sequence Length = 147087 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 acgttcctcttcgcgtcgtt 298 |||||||||||||||||||| Sbjct: 125414 acgttcctcttcgcgtcgtt 125395
>gb|AY022735.1| Oryza sativa microsatellite MRG5060 containing (CCT)X8, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cgtcgtcgccgtcgcggcgg 479 |||||||||||||||||||| Sbjct: 22 cgtcgtcgccgtcgcggcgg 3
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 172 ggaggtcccgccctttgagcgtcctccc 199 ||||||| ||||| |||||||||||||| Sbjct: 99238 ggaggtcgcgccccttgagcgtcctccc 99265
>gb|AC159405.1| Trypanosoma brucei chromosome 8 clone RPCI93-11J15, complete sequence Length = 164873 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 acgttcctcttcgcgtcgtt 298 |||||||||||||||||||| Sbjct: 128027 acgttcctcttcgcgtcgtt 128046
>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence Length = 2481190 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 acgttcctcttcgcgtcgtt 298 |||||||||||||||||||| Sbjct: 1743163 acgttcctcttcgcgtcgtt 1743144
>ref|XM_365538.1| Magnaporthe grisea 70-15 hypothetical protein (MG02240.4) partial mRNA Length = 3444 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 tcttcgcgtcgttggtacat 305 |||||||||||||||||||| Sbjct: 989 tcttcgcgtcgttggtacat 970
>ref|XM_955849.1| Neurospora crassa OR74A hypothetical protein (NCU01385.1) partial mRNA Length = 315 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 acgaggaccggggcagacag 415 |||||||||||||||||||| Sbjct: 280 acgaggaccggggcagacag 299
>ref|XM_326877.1| Neurospora crassa OR74A hypothetical protein (NCU01385.1) partial mRNA Length = 315 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 acgaggaccggggcagacag 415 |||||||||||||||||||| Sbjct: 280 acgaggaccggggcagacag 299
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 462 tcgtcgccgtcgcggcggtg 481 |||||||||||||||||||| Sbjct: 52187 tcgtcgccgtcgcggcggtg 52168
>ref|XM_849855.1| PREDICTED: Canis familiaris similar to solute carrier family 39 (zinc transporter), member 3 isoform a (LOC612127), mRNA Length = 1129 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gggcggcacgttcctcttcg 291 |||||||||||||||||||| Sbjct: 991 gggcggcacgttcctcttcg 1010
>ref|XM_818417.1| Trypanosoma brucei TREU927 clone RPCI93-11J15 hypothetical protein (Tb927.8.5940) partial mRNA Length = 1419 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 acgttcctcttcgcgtcgtt 298 |||||||||||||||||||| Sbjct: 735 acgttcctcttcgcgtcgtt 716
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||||| |||||||| Sbjct: 150477 cgtcgccgtcgctgccgtcgtcgt 150454
>emb|AL451020.1|NC15E11 Neurospora crassa DNA linkage group V Cosmid contig 15E11 Length = 79133 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 acgaggaccggggcagacag 415 |||||||||||||||||||| Sbjct: 16736 acgaggaccggggcagacag 16717
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 ggacgacgccgtccaggatc 372 |||||||||||||||||||| Sbjct: 4359630 ggacgacgccgtccaggatc 4359611
>gb|AE012064.1| Xanthomonas axonopodis pv. citri str. 306, section 442 of 469 of the complete genome Length = 10412 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 451 cgttgctgccgtcgtcgccg 470 |||||||||||||||||||| Sbjct: 4256 cgttgctgccgtcgtcgccg 4237
>dbj|AK132685.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921526M11 product:G protein-coupled receptor kinase 2, groucho gene related (Drosophila), full insert sequence Length = 2410 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 gctgccgtcgtcgccgtcgc 474 |||||||||||||||||||| Sbjct: 339 gctgccgtcgtcgccgtcgc 320
>gb|DQ399653.1| Nonomuraea longicatena K-252a biosynthesis gene cluster, complete sequence Length = 20300 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 ccgtcgtcgccgtcgcggcg 478 |||||||||||||||||||| Sbjct: 8121 ccgtcgtcgccgtcgcggcg 8102
>gb|AF330255.1|AF330255 Hordeum vulgare possible membrane protein LEM1 (Lem1) gene, complete cds Length = 2772 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 455 gctgccgtcgtcgccgtcgcggcggtgc 482 ||||||||||||| ||||||| |||||| Sbjct: 1324 gctgccgtcgtcgtcgtcgcgccggtgc 1297
>dbj|AK020792.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830025H08 product:G protein-coupled receptor kinase 2, groucho gene related (Drosophila), full insert sequence Length = 1226 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 gctgccgtcgtcgccgtcgc 474 |||||||||||||||||||| Sbjct: 339 gctgccgtcgtcgccgtcgc 320
>dbj|AK078475.1| Mus musculus 12 days embryo female mullerian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6820406D08 product:G protein-coupled receptor kinase 2, groucho gene related (Drosophila), full insert sequence Length = 3106 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 455 gctgccgtcgtcgccgtcgc 474 |||||||||||||||||||| Sbjct: 210 gctgccgtcgtcgccgtcgc 191
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gacgtcgccgtcgctgcagt 327 |||||||||||||||||||| Sbjct: 24675444 gacgtcgccgtcgctgcagt 24675425 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||| |||||||||| Sbjct: 6403069 cgtcgccgtcgctccagtcgtcgt 6403092
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 172 ggaggtcccgccctttgagcgtcctccc 199 ||||||| ||||| |||||||||||||| Sbjct: 2523166 ggaggtcgcgccccttgagcgtcctccc 2523139
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cgtcgtcgccgtcgcggcgg 479 |||||||||||||||||||| Sbjct: 21350748 cgtcgtcgccgtcgcggcgg 21350729 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 cgtcgtcgccgtcgcggcgg 479 |||||||||||||||||||| Sbjct: 18867152 cgtcgtcgccgtcgcggcgg 18867171
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tctccgtcgacgttgctgcc 460 |||||||||||||||||||| Sbjct: 2800844 tctccgtcgacgttgctgcc 2800825
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgttgcc 337 ||||||||||||| | |||||||||||| Sbjct: 13144754 cgtcgccgtcgctccggtcgtcgttgcc 13144781 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 310 cgtcgccgtcgctgcagtcgtcgttgcc 337 ||||||||||||| | |||||||||||| Sbjct: 12034390 cgtcgccgtcgctccggtcgtcgttgcc 12034363 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cgtcgtcgccgtcgcggcgg 479 |||||||||||||||||||| Sbjct: 3500210 cgtcgtcgccgtcgcggcgg 3500191
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 cgccgtcgcggcggtgctcg 485 |||||||||||||||||||| Sbjct: 3171002 cgccgtcgcggcggtgctcg 3170983
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 cggccaggacgtggggcggc 278 |||||||||||||||||||| Sbjct: 8457475 cggccaggacgtggggcggc 8457494
>gb|AC135600.3| Oryza sativa chromosome 3 BAC OSJNBb0047K21 genomic sequence, complete sequence Length = 117046 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||| |||||||||| Sbjct: 25548 cgtcgccgtcgctccagtcgtcgt 25525
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cgtcgtcgccgtcgcggcgg 479 |||||||||||||||||||| Sbjct: 2329441 cgtcgtcgccgtcgcggcgg 2329422
>dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0038K02 Length = 118635 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cgtcgtcgccgtcgcggcgg 479 |||||||||||||||||||| Sbjct: 83127 cgtcgtcgccgtcgcggcgg 83108
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cgtcgtcgccgtcgcggcgg 479 |||||||||||||||||||| Sbjct: 68278 cgtcgtcgccgtcgcggcgg 68259
>dbj|AP004740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0092H22 Length = 165194 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 gctgccgtcgtcgccgtcgc 474 |||||||||||||||||||| Sbjct: 120504 gctgccgtcgtcgccgtcgc 120523
>dbj|AP003208.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1158F07 Length = 139491 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgttgcc 337 ||||||||||||| | |||||||||||| Sbjct: 120475 cgtcgccgtcgctccggtcgtcgttgcc 120502
>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487E11 Length = 151303 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgttgcc 337 ||||||||||||| | |||||||||||| Sbjct: 17055 cgtcgccgtcgctccggtcgtcgttgcc 17082
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1153F04 Length = 158174 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 310 cgtcgccgtcgctgcagtcgtcgttgcc 337 ||||||||||||| | |||||||||||| Sbjct: 1330 cgtcgccgtcgctccggtcgtcgttgcc 1303
>dbj|AP004735.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0031P18 Length = 156535 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||| |||||||||| Sbjct: 87505 cgtcgccgtcgctccagtcgtcgt 87528
>dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028G04 Length = 159761 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 310 cgtcgccgtcgctgcagtcgtcgttgcc 337 ||||||||||||| | |||||||||||| Sbjct: 80054 cgtcgccgtcgctccggtcgtcgttgcc 80027
>dbj|AP004734.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0026P23 Length = 180188 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||| |||||||||| Sbjct: 167059 cgtcgccgtcgctccagtcgtcgt 167082
>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015A04 Length = 152058 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 tctccgtcgacgttgctgcc 460 |||||||||||||||||||| Sbjct: 63993 tctccgtcgacgttgctgcc 63974
>dbj|AK120658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158E21, full insert sequence Length = 1929 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cgtcgtcgccgtcgcggcgg 479 |||||||||||||||||||| Sbjct: 118 cgtcgtcgccgtcgcggcgg 99
>dbj|AK072969.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023144D16, full insert sequence Length = 964 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 172 ggaggtcccgccctttgagcgtcctccc 199 ||||||| ||||| |||||||||||||| Sbjct: 579 ggaggtcgcgccccttgagcgtcctccc 552
>gb|AC151669.5| Mus musculus chromosome 5, clone RP23-44L13, complete sequence Length = 254022 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 gctgccgtcgtcgccgtcgc 474 |||||||||||||||||||| Sbjct: 151966 gctgccgtcgtcgccgtcgc 151985
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 cgtcgtcgccgtcgcggcgg 479 |||||||||||||||||||| Sbjct: 86970 cgtcgtcgccgtcgcggcgg 86951
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 172 ggaggtcccgccctttgagcgtcctccc 199 ||||||| ||||| |||||||||||||| Sbjct: 2532197 ggaggtcgcgccccttgagcgtcctccc 2532170
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gacgtcgccgtcgctgcagt 327 |||||||||||||||||||| Sbjct: 24603650 gacgtcgccgtcgctgcagt 24603631 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||| |||||||||| Sbjct: 6402944 cgtcgccgtcgctccagtcgtcgt 6402967
>emb|AL732649.3|CNS08C9O Oryza sativa chromosome 12, . BAC OSJNBb0067N05 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109555 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 cgtcgccgtcgctgcagtcgtcgt 333 ||||||||||||| |||||||||| Sbjct: 64617 cgtcgccgtcgctccagtcgtcgt 64640
>emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143895 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 gacgtcgccgtcgctgcagt 327 |||||||||||||||||||| Sbjct: 120310 gacgtcgccgtcgctgcagt 120291
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 tcgtcgttgccactgccgctcccg 350 |||||| ||||||||||||||||| Sbjct: 2945493 tcgtcgctgccactgccgctcccg 2945470
>emb|AJ233625.1|OCU233625 Oryctolagus cuniculus endogenous retroviral sequence ERV-L pol gene, clone ERV-L Rabbit1 Length = 303 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 ccacaagctttcacacacatccat 73 |||||||||||||||| ||||||| Sbjct: 271 ccacaagctttcacactcatccat 294
>gb|L23501.1|HUMKPRWI Homo sapiens Prader-Willi chromosome DNA fragment Length = 2965 Score = 40.1 bits (20), Expect = 7.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 cctccgccgtcgctcggccaggac 268 ||||||||||||||| |||||||| Sbjct: 2621 cctccgccgtcgctcagccaggac 2598 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,090,893 Number of Sequences: 3902068 Number of extensions: 3090893 Number of successful extensions: 68462 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66080 Number of HSP's gapped (non-prelim): 2382 length of query: 537 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 514 effective length of database: 17,143,297,704 effective search space: 8811655019856 effective search space used: 8811655019856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)