>ARGD_SYNEL (P59322) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 412

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 71  LLYEQHGSANVIGFQQQTDKSICASSLPRIVLPPDFILVPGQPPYCRVTPPLFPAAT 241
           ++ E  G   + G + Q D  + A+ + +  L    +LVP  P   R  PPL  +AT
Sbjct: 338 VIAEVRGWGLINGLELQPDTPLTAAEVVKAALAEGLLLVPAGPKVVRFVPPLIVSAT 394

>PRDM2_HUMAN (Q13029) PR domain zinc finger protein 2 (PR domain-containing|
            protein 2) (Retinoblastoma protein-interacting
            zinc-finger protein) (Zinc finger protein RIZ)
            (MTE-binding protein) (MTB-ZF) (GATA-3-binding protein
            G3B)
          Length = 1718

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = +2

Query: 131  SICASSLPRIVLPPDFILVPGQPPYCRVT---PPLFPAATLLQPSGL----PCDSP 277
            S+ +  LP +++P D    P  PP   V    PPL P   L  PS      PC SP
Sbjct: 955  SLSSGQLPPLLIPTDPSSPPPCPPVLTVATPPPPLLPTVPLPAPSSSASPHPCPSP 1010

>LBX1_HUMAN (P52954) Transcription factor LBX1|
          Length = 280

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 284 WGGE--SHKGVRRAGEASLRGRAAVSRGSTVAALE 186
           WGG     +G  RAG  +L GRA +S+ S + ALE
Sbjct: 54  WGGAPAGRRGQARAGRLALAGRALLSKTSPLCALE 88

>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 1002

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 146 SLPRIVLPPDFILVPGQPPYCRVTP-PLFPAATLLQP-SGLPCDSPRP 283
           S+P I +PP    +P  PP   + P P  P  T L P SG+P  +P P
Sbjct: 204 SIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTTLPPMSGMPPLNPPP 251

>NCOA2_RAT (Q9WUI9) Nuclear receptor coactivator 2 (NCoA-2) (Transcriptional|
           intermediary factor 2)
          Length = 1465

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 152 PRIVLPPDFILVPGQPPYCRVTPPLF-PAATLLQPSGLPCDSPRPTHRHTNA 304
           P  VL P   + PG     RV P  F PA +L  P+G+ C S   +H +TN+
Sbjct: 482 PSSVLSPRHRMSPGVAGSPRVPPSQFSPAGSLHSPAGV-CSSTGNSHSYTNS 532

>KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-associated protein|
           5.1) (Ultrahigh sulfur keratin-associated protein 5.1)
          Length = 278

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 22/68 (32%), Positives = 27/68 (39%)
 Frame = -3

Query: 282 GRGESQGSPEGWRSVAAGKSGGVTRQYGGCPGTRIKSGGSTILGRDEAQMDLSVCCWKPI 103
           G G   GS  G  S    K G      G C G+  K G  +  G   +   + VCC KP+
Sbjct: 88  GCGSCGGSKGGCGSCGGSKGG-----CGSCGGS--KGGCGSGCGGCGSSCCVPVCCCKPM 140

Query: 102 TLAEPCCS 79
               P CS
Sbjct: 141 CCCVPACS 148

>UBC3_SCHPO (P40984) Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19)|
           (Ubiquitin-protein ligase hus5) (Ubiquitin carrier
           protein hus5) (SUMO protein ligase) (SUMO-conjugating
           enzyme) (Ubiquitin carrier protein 9)
          Length = 157

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 188 PGQPPYCRVTPPLFPAATLLQPSGLPC 268
           P +PP CR TPPLF     + PSG  C
Sbjct: 69  PTRPPKCRFTPPLFHPN--VYPSGTVC 93

>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 146 SLPRIVLPPDFILVPGQPPYCRVTP-PLFPAATLLQP-SGLPCDSPRP 283
           S+P I +PP    +P  PP   + P P  P  T L P SG+P  +P P
Sbjct: 204 SIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPP 251

>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)|
           (SH3/WW domain anchor protein in the nucleus) (SWAN)
          Length = 932

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 146 SLPRIVLPPDFILVPGQPPYCRVTP-PLFPAATLLQP-SGLPCDSPRP 283
           S+P I +PP    +P  PP   + P P  P  T L P SG+P  +P P
Sbjct: 204 SIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPP 251

>LBX1_MOUSE (P52955) Transcription factor LBX1|
          Length = 280

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 284 WGGE--SHKGVRRAGEASLRGRAAVSRGSTVAALE 186
           WGG     +G  RAG  +L GRA +S+ S + ALE
Sbjct: 54  WGGAPAGGRGQARAGRLALAGRALLSQTSPLCALE 88

>KRUC_SHEEP (P26372) Keratin, ultra high-sulfur matrix protein (UHS keratin)|
          Length = 182

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -3

Query: 234 AGKSGGVTRQYGGCPGTRIKSGGSTILGRDEAQMDLSVCCWKPITLAEPCCS 79
           +G SGG     GGC G+R     S+          + VCC KP+    P CS
Sbjct: 4   SGCSGGCGSSCGGC-GSRCGGCSSSCC--------VPVCCCKPVCCCVPACS 46

>FP1_MYTGA (Q27409) Adhesive plaque matrix protein precursor (Foot protein 1)|
           (MGFP1) (MGFP-1)
          Length = 751

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 152 PRIVLPPDFILVPGQPPYCRVTPPLFPAATLLQPSGLPCDSPRPTHRHT 298
           P+I  PP +   P  PP  +  P  +P     +PS LP    +P++  T
Sbjct: 361 PKISYPPTYKAKPSYPPIYKAKPS-YPPTYKAKPSYLPTYKAKPSYPPT 408

>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
           protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
           ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
           sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 152 PRIVLPPDFILVPGQPPYCRVTPPLFPAATLLQPSGLPCDSPRP 283
           P+I++PP+ ++ P  PP     PP  P + + Q    PC    P
Sbjct: 751 PQILVPPNGVVPPPPPP----PPPPTPGSAMAQLKPAPCAPSLP 790

>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein|
           5.3) (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -3

Query: 234 AGKSGGVTRQYGGCPGTRIKSGGSTILGRDEAQMDLSVCCWKPITLAEPCCS 79
           +G SGG     GGC G+     GS   G       + VCC KP+    P CS
Sbjct: 4   SGCSGGCGSSCGGC-GSSCGGCGSGYGGCGSGCC-VPVCCCKPVCCCVPACS 53

>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2|
          Length = 925

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -3

Query: 282 GRGESQGSPEGWRSVAAGKSGGVTRQYGGCPGTRIKSGGSTILGR 148
           G G S G   G+R    G  GG   Q GG  G   + GG+   GR
Sbjct: 259 GVGASPGGGGGFRGRPGGGGGGRPGQRGGAAGAFGRPGGAPRRGR 303

>SYNJ1_HUMAN (O43426) Synaptojanin-1 (EC 3.1.3.36) (Synaptic|
            inositol-1,4,5-trisphosphate 5-phosphatase 1)
          Length = 1575

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
 Frame = +2

Query: 182  LVPGQPPYCR-VTPPLFPAATLLQPSGLPCDSPRPTHRHTNAIWKKQLPGMLHIDA*SNV 358
            L P +PP  R V PP  PA     P      SP PT +    I     PG+   +  +  
Sbjct: 1103 LEPKRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARREMEAPK 1162

Query: 359  YP*TTMA-SIARCAPFSLQSTAG 424
             P TT   +I R  P      AG
Sbjct: 1163 SPGTTRKDNIGRSQPSPQAGLAG 1185

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = +2

Query: 167 PPDFILVPGQPPYCRVTPPLFPAATLLQPSGLPCDSPRPTHRHTN 301
           PP    +PGQPP    TP L    +LLQ S  P   P P HR+ N
Sbjct: 197 PPQQRYIPGQPPQ-GPTPTL---NSLLQSSNPP---PPPQHRYAN 234

>HMGYB_SOYBN (Q10370) HMG-Y-related protein B (SB16B protein) (Fragment)|
          Length = 152

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = +2

Query: 152 PRIVLPPDFILVP----GQPPYCRVTPPLFPAATLLQPSGLPCDSPRPTHR 292
           P++ LPP  ++ P    G+PP     PP  P A     +G P   P+   R
Sbjct: 69  PKVPLPPGTVVSPPRPRGRPPKDPNAPPKSPKAKATPATGRPRGRPKKVAR 119

>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene|
           AF4) (FEL protein)
          Length = 1210

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
 Frame = +2

Query: 59  SSQFLLYEQHGSANVIGFQQQTDKSICASSLPRIVL--------PPDFILVPGQPPYCRV 214
           S+Q  L    GS+ V G      K  C +  P+ +         P D ++ P QPP    
Sbjct: 216 SNQQTLPRTQGSSKVHG-SSNNSKGYCPAKSPKDLAVKVHDKETPQDSLVAPAQPPSQTF 274

Query: 215 TPPLFPAATL 244
            PP  P+ ++
Sbjct: 275 PPPSLPSKSV 284

>DED1_CRYNE (Q5KN36) ATP-dependent RNA helicase ded1 (EC 3.6.1.-)|
          Length = 637

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 24/74 (32%), Positives = 29/74 (39%)
 Frame = +2

Query: 74  LYEQHGSANVIGFQQQTDKSICASSLPRIVLPPDFILVPGQPPYCRVTPPLFPAATLLQP 253
           L  Q  S N+ G  Q+  K       P  V  P  +     PP     PP  PAA    P
Sbjct: 9   LASQMNSVNLNGASQKPQK-------PAYV--PPHLRNRAAPP--AAVPPAAPAAYRPSP 57

Query: 254 SGLPCDSPRPTHRH 295
           +GLP  +  P  RH
Sbjct: 58  TGLPTPATTPPTRH 71

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = +2

Query: 35  HILEMHTFSSQFLLYEQHGSANVIGFQQQTD--KSICASSLPRIVLPPDFILVPGQPPYC 208
           H  ++  +  Q+  ++ H  A     Q++ +  +++ +  L  + +PP F+     PP  
Sbjct: 435 HKDQLQEYEKQWKTWQGHMKATQTYLQEKVNSFQTVKSQYLGNMAMPPPFVPYSQMPPPL 494

Query: 209 RVTPPLFPAATL---LQPSGLPCDSPRP 283
              PP     +L   + P  LP   P P
Sbjct: 495 PTMPPPVLPPSLPPPVMPPALPTSIPPP 522


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,661,790
Number of Sequences: 219361
Number of extensions: 1575580
Number of successful extensions: 5141
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5133
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)