>NU2M_MUNMN (Q85PS1) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 48  LALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVP 149
           L + +     TF+++ Y +TTT L L   WN+ P
Sbjct: 205 LTIYIIMTTTTFMLFMYNSTTTTLSLSQTWNKAP 238

>NU2M_POTFL (Q2TGY5) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 347

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 39  TAALALQVCTRMLTFIVYHYRTTTTPLCLIYWWNEVP 149
           T  L + +   + TF+++ Y ++TT L L + WN+ P
Sbjct: 202 TLNLMMYIVMTLSTFMLFMYSSSTTTLSLSHAWNKFP 238

>VASS_BPGA (P07394) Assembly protein (Maturation protein) (A protein)|
          Length = 390

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
 Frame = -1

Query: 296 RVTYRLSSRVRLPVLANLGT*RSDGGRHN-KTSNICQDKNIDISWSYR-------TTWHF 141
           +  Y L ++ +LP    L   R+ GG HN K  N+   ++   +WSYR         W+F
Sbjct: 210 KAAYDLLTQTKLPAFMPLRVTRTVGGTHNYKVRNV---ESAGDTWSYRHRLSVNYRIWYF 266

Query: 140 IPPVDQA*WCSS 105
           I     A W SS
Sbjct: 267 ISDPRLA-WASS 277


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,454,227
Number of Sequences: 219361
Number of extensions: 2068129
Number of successful extensions: 4844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4843
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)