Clone Information

BLAST Search Result

Clone Name	rbasd2n05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_464102.1\| Oryza sativa (japonica cultivar-group), mRNA	375	e-100
2	ref\|XM_506716.1\| PREDICTED Oryza sativa (japonica cultivar-group...	375	e-100
3	dbj\|AK074020.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	375	e-100
4	dbj\|AK067279.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	375	e-100
5	dbj\|AK072069.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	192	1e-45
6	dbj\|AK067999.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	192	1e-45
7	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	167	6e-38
8	dbj\|AP005721.3\| Oryza sativa (japonica cultivar-group) genomic D...	167	6e-38
9	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	98	4e-17
10	dbj\|AP003726.3\| Oryza sativa (japonica cultivar-group) genomic D...	98	4e-17
11	ref\|NM_114153.1\| Arabidopsis thaliana ATP binding / galactokinas...	48	0.037
12	gb\|AC096866.2\| Takifugu rubripes clone 247M18, complete sequence	46	0.15
13	gb\|AC018475.32\| Homo sapiens 12 BAC RP11-490G8 (Roswell Park Can...	44	0.58
14	ref\|NM_180143.3\| Arabidopsis thaliana nucleotide binding AT2G474...	42	2.3
15	ref\|XM_415031.1\| PREDICTED: Gallus gallus similar to KIAA1264 pr...	42	2.3
16	gb\|AY128365.1\| Arabidopsis thaliana putative WD-40 repeat protei...	42	2.3
17	gb\|AC002535.3\| Arabidopsis thaliana chromosome 2 clone T30B22 ma...	42	2.3
18	gb\|AC109271.10\| Mus musculus chromosome 1, clone RP23-353I19, co...	40	9.0
19	gb\|AC127593.4\| Mus musculus BAC clone RP23-390G15 from chromosom...	40	9.0
20	gb\|AC133078.3\| Mus musculus BAC clone RP24-444O21 from chromosom...	40	9.0
21	gb\|AC123028.4\| Mus musculus BAC clone RP24-553H21 from chromosom...	40	9.0
22	gb\|AC122287.4\| Mus musculus BAC clone RP23-253A15 from 1, comple...	40	9.0
23	emb\|AL358972.13\| Human DNA sequence from clone RP11-347L18 on ch...	40	9.0
24	emb\|AL158211.29\| Human DNA sequence from clone RP11-573G6 on chr...	40	9.0
25	emb\|CR450818.8\| Zebrafish DNA sequence from clone DKEY-172M14 in...	40	9.0
26	gb\|AC090647.6\| Genomic sequence for Mus musculus, clone RP23-252...	40	9.0
27	dbj\|AP007155.1\| Aspergillus oryzae RIB40 genomic DNA, SC003	40	9.0
28	gb\|AY914874.1\| Sinorhizobium meliloti plasmid pMBA19a CsrA-like ...	40	9.0
29	gb\|AC103778.2\| Homo sapiens chromosome 8, clone RP11-463C14, com...	40	9.0
30	gb\|AC107301.10\| Homo sapiens 3 BAC RP11-544A22 (Roswell Park Can...	40	9.0
31	gb\|AC090430.7\| Mus Musculus Strain C57BL6/J chromosome 10 BAC, R...	40	9.0
32	gb\|AC005273.1\|AC005273 Homo sapiens chromosome 17, clone hRPK.87...	40	9.0

>ref|XM_464102.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3311

 Score =  375 bits (189), Expect = e-100
 Identities = 377/439 (85%), Gaps = 3/439 (0%)
 Strand = Plus / Minus

                                                                        
Query: 221  cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 280
            |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| |||
Sbjct: 3063 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 3004

                                                                        
Query: 281  accggtaggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcacta 340
            |  |||||||| || || || ||||||||||| ||||| ||||| |||||||||||||| 
Sbjct: 3003 attggtaggtacccggtagcagctttgtatctcttctgaatctcaaaaatctcttcactg 2944

                                                                        
Query: 341  cttttcaggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatc 400
            ||||||| ||  ||||||||||| |||||||| || || ||||| ||||||||||| |||
Sbjct: 2943 cttttcaagcaatttttcccaatgacacaaaccgagcccccagatcctccaccagttatc 2884

                                                                        
Query: 401  tttgcaccaaatagactcgggcctccatgctgcgaggtagtctttctgtgctggatttct 460
            ||||||||||||| ||| || || |||| ||| |||||   ||| |||||||||| ||||
Sbjct: 2883 tttgcaccaaataaactaggaccaccatcctgtgaggt---cttcctgtgctggacttct 2827

                                                                        
Query: 461  tgtactagattcactagcctgtcagtcccatcagaaccaagcccgcaagcattatagctg 520
            ||||| | ||| || |||||||| || ||||||||||||||||| |||||||| ||||||
Sbjct: 2826 tgtaccatattaacaagcctgtcggttccatcagaaccaagcccacaagcattgtagctg 2767

                                                                        
Query: 521  taatggcactgatacataagttctccaagcgctgacagttgctcgtctgttttggctgct 580
            || |||||||||||||| | ||||||||| || || ||||||||  ||||||||||||||
Sbjct: 2766 tagtggcactgatacatcaattctccaagggccgaaagttgctcaactgttttggctgct 2707

                                                                        
Query: 581  gttaacaatgctttgaaggcctcaacgcggaagttctcgtagatgggatgtctagtgggg 640
            |||| ||||||||||||||||||||| |||||||||||||| || ||||||||||| || 
Sbjct: 2706 gttagcaatgctttgaaggcctcaactcggaagttctcgtatataggatgtctagtagga 2647

                               
Query: 641  gccttcacactgtaagatc 659
            |||||||||| ||||||||
Sbjct: 2646 gccttcacacagtaagatc 2628

to top

>ref|XM_506716.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1123_E07.2 mRNA
          Length = 3765

 Score =  375 bits (189), Expect = e-100
 Identities = 377/439 (85%), Gaps = 3/439 (0%)
 Strand = Plus / Minus

                                                                        
Query: 221  cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 280
            |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| |||
Sbjct: 3058 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 2999

                                                                        
Query: 281  accggtaggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcacta 340
            |  |||||||| || || || ||||||||||| ||||| ||||| |||||||||||||| 
Sbjct: 2998 attggtaggtacccggtagcagctttgtatctcttctgaatctcaaaaatctcttcactg 2939

                                                                        
Query: 341  cttttcaggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatc 400
            ||||||| ||  ||||||||||| |||||||| || || ||||| ||||||||||| |||
Sbjct: 2938 cttttcaagcaatttttcccaatgacacaaaccgagcccccagatcctccaccagttatc 2879

                                                                        
Query: 401  tttgcaccaaatagactcgggcctccatgctgcgaggtagtctttctgtgctggatttct 460
            ||||||||||||| ||| || || |||| ||| |||||   ||| |||||||||| ||||
Sbjct: 2878 tttgcaccaaataaactaggaccaccatcctgtgaggt---cttcctgtgctggacttct 2822

                                                                        
Query: 461  tgtactagattcactagcctgtcagtcccatcagaaccaagcccgcaagcattatagctg 520
            ||||| | ||| || |||||||| || ||||||||||||||||| |||||||| ||||||
Sbjct: 2821 tgtaccatattaacaagcctgtcggttccatcagaaccaagcccacaagcattgtagctg 2762

                                                                        
Query: 521  taatggcactgatacataagttctccaagcgctgacagttgctcgtctgttttggctgct 580
            || |||||||||||||| | ||||||||| || || ||||||||  ||||||||||||||
Sbjct: 2761 tagtggcactgatacatcaattctccaagggccgaaagttgctcaactgttttggctgct 2702

                                                                        
Query: 581  gttaacaatgctttgaaggcctcaacgcggaagttctcgtagatgggatgtctagtgggg 640
            |||| ||||||||||||||||||||| |||||||||||||| || ||||||||||| || 
Sbjct: 2701 gttagcaatgctttgaaggcctcaactcggaagttctcgtatataggatgtctagtagga 2642

                               
Query: 641  gccttcacactgtaagatc 659
            |||||||||| ||||||||
Sbjct: 2641 gccttcacacagtaagatc 2623

to top

>dbj|AK074020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075P06, full
            insert sequence
          Length = 3312

 Score =  375 bits (189), Expect = e-100
 Identities = 377/439 (85%), Gaps = 3/439 (0%)
 Strand = Plus / Minus

                                                                        
Query: 221  cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 280
            |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| |||
Sbjct: 3064 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 3005

                                                                        
Query: 281  accggtaggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcacta 340
            |  |||||||| || || || ||||||||||| ||||| ||||| |||||||||||||| 
Sbjct: 3004 attggtaggtacccggtagcagctttgtatctcttctgaatctcaaaaatctcttcactg 2945

                                                                        
Query: 341  cttttcaggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatc 400
            ||||||| ||  ||||||||||| |||||||| || || ||||| ||||||||||| |||
Sbjct: 2944 cttttcaagcaatttttcccaatgacacaaaccgagcccccagatcctccaccagttatc 2885

                                                                        
Query: 401  tttgcaccaaatagactcgggcctccatgctgcgaggtagtctttctgtgctggatttct 460
            ||||||||||||| ||| || || |||| ||| |||||   ||| |||||||||| ||||
Sbjct: 2884 tttgcaccaaataaactaggaccaccatcctgtgaggt---cttcctgtgctggacttct 2828

                                                                        
Query: 461  tgtactagattcactagcctgtcagtcccatcagaaccaagcccgcaagcattatagctg 520
            ||||| | ||| || |||||||| || ||||||||||||||||| |||||||| ||||||
Sbjct: 2827 tgtaccatattaacaagcctgtcggttccatcagaaccaagcccacaagcattgtagctg 2768

                                                                        
Query: 521  taatggcactgatacataagttctccaagcgctgacagttgctcgtctgttttggctgct 580
            || |||||||||||||| | ||||||||| || || ||||||||  ||||||||||||||
Sbjct: 2767 tagtggcactgatacatcaattctccaagggccgaaagttgctcaactgttttggctgct 2708

                                                                        
Query: 581  gttaacaatgctttgaaggcctcaacgcggaagttctcgtagatgggatgtctagtgggg 640
            |||| ||||||||||||||||||||| |||||||||||||| || ||||||||||| || 
Sbjct: 2707 gttagcaatgctttgaaggcctcaactcggaagttctcgtatataggatgtctagtagga 2648

                               
Query: 641  gccttcacactgtaagatc 659
            |||||||||| ||||||||
Sbjct: 2647 gccttcacacagtaagatc 2629

to top

>dbj|AK067279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097O08, full
            insert sequence
          Length = 3764

 Score =  375 bits (189), Expect = e-100
 Identities = 377/439 (85%), Gaps = 3/439 (0%)
 Strand = Plus / Minus

                                                                        
Query: 221  cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 280
            |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| |||
Sbjct: 3057 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 2998

                                                                        
Query: 281  accggtaggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcacta 340
            |  |||||||| || || || ||||||||||| ||||| ||||| |||||||||||||| 
Sbjct: 2997 attggtaggtacccggtagcagctttgtatctcttctgaatctcaaaaatctcttcactg 2938

                                                                        
Query: 341  cttttcaggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatc 400
            ||||||| ||  ||||||||||| |||||||| || || ||||| ||||||||||| |||
Sbjct: 2937 cttttcaagcaatttttcccaatgacacaaaccgagcccccagatcctccaccagttatc 2878

                                                                        
Query: 401  tttgcaccaaatagactcgggcctccatgctgcgaggtagtctttctgtgctggatttct 460
            ||||||||||||| ||| || || |||| ||| |||||   ||| |||||||||| ||||
Sbjct: 2877 tttgcaccaaataaactaggaccaccatcctgtgaggt---cttcctgtgctggacttct 2821

                                                                        
Query: 461  tgtactagattcactagcctgtcagtcccatcagaaccaagcccgcaagcattatagctg 520
            ||||| | ||| || |||||||| || ||||||||||||||||| |||||||| ||||||
Sbjct: 2820 tgtaccatattaacaagcctgtcggttccatcagaaccaagcccacaagcattgtagctg 2761

                                                                        
Query: 521  taatggcactgatacataagttctccaagcgctgacagttgctcgtctgttttggctgct 580
            || |||||||||||||| | ||||||||| || || ||||||||  ||||||||||||||
Sbjct: 2760 tagtggcactgatacatcaattctccaagggccgaaagttgctcaactgttttggctgct 2701

                                                                        
Query: 581  gttaacaatgctttgaaggcctcaacgcggaagttctcgtagatgggatgtctagtgggg 640
            |||| ||||||||||||||||||||| |||||||||||||| || ||||||||||| || 
Sbjct: 2700 gttagcaatgctttgaaggcctcaactcggaagttctcgtatataggatgtctagtagga 2641

                               
Query: 641  gccttcacactgtaagatc 659
            |||||||||| ||||||||
Sbjct: 2640 gccttcacacagtaagatc 2622

to top

>dbj|AK072069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108L09, full
            insert sequence
          Length = 3647

 Score =  192 bits (97), Expect = 1e-45
 Identities = 187/217 (86%)
 Strand = Plus / Minus

                                                                        
Query: 443  tttctgtgctggatttcttgtactagattcactagcctgtcagtcccatcagaaccaagc 502
            ||||||||||| ||||||||||| ||||| ||||||   |||||||||||||||||||| 
Sbjct: 2797 tttctgtgctgcatttcttgtaccagattaactagcagatcagtcccatcagaaccaaga 2738

                                                                        
Query: 503  ccgcaagcattatagctgtaatggcactgatacataagttctccaagcgctgacagttgc 562
            || || |||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||
Sbjct: 2737 ccacatgcattatagctgtagtggcactggtacataagttctccaagggctgacaattgc 2678

                                                                        
Query: 563  tcgtctgttttggctgctgttaacaatgctttgaaggcctcaacgcggaagttctcgtag 622
            || || || || ||||||  ||| | ||||||||||| |||||| || |||||||| || 
Sbjct: 2677 tcatcggtattagctgcttctaagagtgctttgaaggtctcaactcgaaagttctcatat 2618

                                                 
Query: 623  atgggatgtctagtgggggccttcacactgtaagatc 659
            |||||||| ||||| || ||||||||| |||||||||
Sbjct: 2617 atgggatgcctagtaggagccttcacattgtaagatc 2581



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 155/192 (80%)
 Strand = Plus / Minus

                                                                        
Query: 226  tcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagacaaccgg 285
            ||||||||||||||| || |||||| |||| || || || || || ||||| |  |  ||
Sbjct: 3011 tcggatcttcaggtagccgaatttggcagcgcctggggatgatccatcgaataggattgg 2952

                                                                        
Query: 286  taggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcactactttt 345
            |||||| || || ||||| ||||| |||| ||| |||||||  ||||| ||||| |||||
Sbjct: 2951 taggtagccagttgctgccttgtacctttgctgaatctcgatgatctcctcactgctttt 2892

                                                                        
Query: 346  caggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatctttgc 405
             |||| ||||||||| || || |||||||| || || |||||||| || || ||||| ||
Sbjct: 2891 gaggcagtttttccccatgacgcaaactgagcctccggaacctcctccggtaatcttagc 2832

                        
Query: 406  accaaatagact 417
            ||||||||||||
Sbjct: 2831 accaaatagact 2820

to top

>dbj|AK067999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F06, full
            insert sequence
          Length = 3724

 Score =  192 bits (97), Expect = 1e-45
 Identities = 187/217 (86%)
 Strand = Plus / Minus

                                                                        
Query: 443  tttctgtgctggatttcttgtactagattcactagcctgtcagtcccatcagaaccaagc 502
            ||||||||||| ||||||||||| ||||| ||||||   |||||||||||||||||||| 
Sbjct: 3174 tttctgtgctgcatttcttgtaccagattaactagcagatcagtcccatcagaaccaaga 3115

                                                                        
Query: 503  ccgcaagcattatagctgtaatggcactgatacataagttctccaagcgctgacagttgc 562
            || || |||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||
Sbjct: 3114 ccacatgcattatagctgtagtggcactggtacataagttctccaagggctgacaattgc 3055

                                                                        
Query: 563  tcgtctgttttggctgctgttaacaatgctttgaaggcctcaacgcggaagttctcgtag 622
            || || || || ||||||  ||| | ||||||||||| |||||| || |||||||| || 
Sbjct: 3054 tcatcggtattagctgcttctaagagtgctttgaaggtctcaactcgaaagttctcatat 2995

                                                 
Query: 623  atgggatgtctagtgggggccttcacactgtaagatc 659
            |||||||| ||||| || ||||||||| |||||||||
Sbjct: 2994 atgggatgcctagtaggagccttcacattgtaagatc 2958



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 155/192 (80%)
 Strand = Plus / Minus

                                                                        
Query: 226  tcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagacaaccgg 285
            ||||||||||||||| || |||||| |||| || || || || || ||||| |  |  ||
Sbjct: 3388 tcggatcttcaggtagccgaatttggcagcgcctggggatgatccatcgaataggattgg 3329

                                                                        
Query: 286  taggtaacccgtggctgctttgtatcttttctggatctcgaaaatctcttcactactttt 345
            |||||| || || ||||| ||||| |||| ||| |||||||  ||||| ||||| |||||
Sbjct: 3328 taggtagccagttgctgccttgtacctttgctgaatctcgatgatctcctcactgctttt 3269

                                                                        
Query: 346  caggctgtttttcccaataacacaaactgaaccaccagaacctccaccagtgatctttgc 405
             |||| ||||||||| || || |||||||| || || |||||||| || || ||||| ||
Sbjct: 3268 gaggcagtttttccccatgacgcaaactgagcctccggaacctcctccggtaatcttagc 3209

                        
Query: 406  accaaatagact 417
            ||||||||||||
Sbjct: 3208 accaaatagact 3197

to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  167 bits (84), Expect = 6e-38
 Identities = 176/206 (85%), Gaps = 3/206 (1%)
 Strand = Plus / Plus

                                                                           
Query: 326     aaaatctcttcactacttttcaggctgtttttcccaataacacaaactgaaccaccagaa 385
               |||||||||||||| ||||||| ||  ||||||||||| |||||||| || || ||||| 
Sbjct: 2231650 aaaatctcttcactgcttttcaagcaatttttcccaatgacacaaaccgagcccccagat 2231709

                                                                           
Query: 386     cctccaccagtgatctttgcaccaaatagactcgggcctccatgctgcgaggtagtcttt 445
               ||||||||||| |||||||||||||||| ||| || || |||| ||| |||   ||||| 
Sbjct: 2231710 cctccaccagttatctttgcaccaaataaactaggaccaccatcctgtgag---gtcttc 2231766

                                                                           
Query: 446     ctgtgctggatttcttgtactagattcactagcctgtcagtcccatcagaaccaagcccg 505
               |||||||||| ||||||||| | ||| || |||||||| || ||||||||||||||||| 
Sbjct: 2231767 ctgtgctggacttcttgtaccatattaacaagcctgtcggttccatcagaaccaagccca 2231826

                                         
Query: 506     caagcattatagctgtaatggcactg 531
               |||||||| |||||||| ||||||||
Sbjct: 2231827 caagcattgtagctgtagtggcactg 2231852



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                           
Query: 529     ctgatacataagttctccaagcgctgacagttgctcgtctgttttggctgctgttaacaa 588
               ||||||||| | ||||||||| || || ||||||||  |||||||||||||||||| |||
Sbjct: 2231945 ctgatacatcaattctccaagggccgaaagttgctcaactgttttggctgctgttagcaa 2232004

                             
Query: 589     tgctttgaaggcct 602
               ||||||||||||||
Sbjct: 2232005 tgctttgaaggcct 2232018



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                           
Query: 600     cctcaacgcggaagttctcgtagatgggatgtctagtgggggccttcacactgtaagatc 659
               ||||||| |||||||||||||| || ||||||||||| || |||||||||| ||||||||
Sbjct: 2232292 cctcaactcggaagttctcgtatataggatgtctagtaggagccttcacacagtaagatc 2232351



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 86/103 (83%)
 Strand = Plus / Plus

                                                                           
Query: 221     cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 280
               |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| |||
Sbjct: 2231393 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 2231452

                                                          
Query: 281     accggtaggtaacccgtggctgctttgtatcttttctggatct 323
               |  |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 2231453 attggtaggtacccggtagcagctttgtatctcttctgaatct 2231495

to top

>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1123_E07
          Length = 113187

 Score =  167 bits (84), Expect = 6e-38
 Identities = 176/206 (85%), Gaps = 3/206 (1%)
 Strand = Plus / Plus

                                                                         
Query: 326   aaaatctcttcactacttttcaggctgtttttcccaataacacaaactgaaccaccagaa 385
             |||||||||||||| ||||||| ||  ||||||||||| |||||||| || || ||||| 
Sbjct: 18599 aaaatctcttcactgcttttcaagcaatttttcccaatgacacaaaccgagcccccagat 18658

                                                                         
Query: 386   cctccaccagtgatctttgcaccaaatagactcgggcctccatgctgcgaggtagtcttt 445
             ||||||||||| |||||||||||||||| ||| || || |||| ||| |||   ||||| 
Sbjct: 18659 cctccaccagttatctttgcaccaaataaactaggaccaccatcctgtgag---gtcttc 18715

                                                                         
Query: 446   ctgtgctggatttcttgtactagattcactagcctgtcagtcccatcagaaccaagcccg 505
             |||||||||| ||||||||| | ||| || |||||||| || ||||||||||||||||| 
Sbjct: 18716 ctgtgctggacttcttgtaccatattaacaagcctgtcggttccatcagaaccaagccca 18775

                                       
Query: 506   caagcattatagctgtaatggcactg 531
             |||||||| |||||||| ||||||||
Sbjct: 18776 caagcattgtagctgtagtggcactg 18801



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 66/74 (89%)
 Strand = Plus / Plus

                                                                         
Query: 529   ctgatacataagttctccaagcgctgacagttgctcgtctgttttggctgctgttaacaa 588
             ||||||||| | ||||||||| || || ||||||||  |||||||||||||||||| |||
Sbjct: 18894 ctgatacatcaattctccaagggccgaaagttgctcaactgttttggctgctgttagcaa 18953

                           
Query: 589   tgctttgaaggcct 602
             ||||||||||||||
Sbjct: 18954 tgctttgaaggcct 18967



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                         
Query: 600   cctcaacgcggaagttctcgtagatgggatgtctagtgggggccttcacactgtaagatc 659
             ||||||| |||||||||||||| || ||||||||||| || |||||||||| ||||||||
Sbjct: 19241 cctcaactcggaagttctcgtatataggatgtctagtaggagccttcacacagtaagatc 19300



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 86/103 (83%)
 Strand = Plus / Plus

                                                                         
Query: 221   cgccatcggatcttcaggtacccaaatttgccagcaccgggagacgaaccctcgaagaca 280
             |||| ||| ||||||||||| ||||| ||||| ||||| ||||| || |||||||| |||
Sbjct: 18342 cgccgtcgaatcttcaggtatccaaacttgcctgcacctggagatgagccctcgaaaaca 18401

                                                        
Query: 281   accggtaggtaacccgtggctgctttgtatcttttctggatct 323
             |  |||||||| || || || ||||||||||| ||||| ||||
Sbjct: 18402 attggtaggtacccggtagcagctttgtatctcttctgaatct 18444

to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                            
Query: 443      tttctgtgctggatttcttgtactagattcactagcctgtcagtcccatcagaaccaagc 502
                ||||||||||| ||||||||||| ||||| ||||||   |||||||||||||||||||| 
Sbjct: 29117672 tttctgtgctgcatttcttgtaccagattaactagcagatcagtcccatcagaaccaaga 29117613

                                             
Query: 503      ccgcaagcattatagctgtaatggcactg 531
                || || |||||||||||||| ||||||||
Sbjct: 29117612 ccacatgcattatagctgtagtggcactg 29117584



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                            
Query: 329      atctcttcactacttttcaggctgtttttcccaataacacaaactgaaccaccagaacct 388
                ||||| ||||| ||||| |||| ||||||||| || || |||||||| || || ||||||
Sbjct: 29117783 atctcctcactgcttttgaggcagtttttccccatgacgcaaactgagcctccggaacct 29117724

                                             
Query: 389      ccaccagtgatctttgcaccaaatagact 417
                || || || ||||| ||||||||||||||
Sbjct: 29117723 cctccggtaatcttagcaccaaatagact 29117695



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                            
Query: 533      tacataagttctccaagcgctgacagttgctcgtctgttttggctgctgttaacaatgct 592
                ||||||||||||||||| ||||||| |||||| || || || ||||||  ||| | ||||
Sbjct: 29117450 tacataagttctccaagggctgacaattgctcatcggtattagctgcttctaagagtgct 29117391

                       
Query: 593      ttgaagg 599
                |||||||
Sbjct: 29117390 ttgaagg 29117384

to top

>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0596H10
          Length = 166570

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 79/89 (88%)
 Strand = Plus / Minus

                                                                          
Query: 443    tttctgtgctggatttcttgtactagattcactagcctgtcagtcccatcagaaccaagc 502
              ||||||||||| ||||||||||| ||||| ||||||   |||||||||||||||||||| 
Sbjct: 132659 tttctgtgctgcatttcttgtaccagattaactagcagatcagtcccatcagaaccaaga 132600

                                           
Query: 503    ccgcaagcattatagctgtaatggcactg 531
              || || |||||||||||||| ||||||||
Sbjct: 132599 ccacatgcattatagctgtagtggcactg 132571



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                          
Query: 329    atctcttcactacttttcaggctgtttttcccaataacacaaactgaaccaccagaacct 388
              ||||| ||||| ||||| |||| ||||||||| || || |||||||| || || ||||||
Sbjct: 132770 atctcctcactgcttttgaggcagtttttccccatgacgcaaactgagcctccggaacct 132711

                                           
Query: 389    ccaccagtgatctttgcaccaaatagact 417
              || || || ||||| ||||||||||||||
Sbjct: 132710 cctccggtaatcttagcaccaaatagact 132682



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                          
Query: 533    tacataagttctccaagcgctgacagttgctcgtctgttttggctgctgttaacaatgct 592
              ||||||||||||||||| ||||||| |||||| || || || ||||||  ||| | ||||
Sbjct: 132437 tacataagttctccaagggctgacaattgctcatcggtattagctgcttctaagagtgct 132378

                     
Query: 593    ttgaagg 599
              |||||||
Sbjct: 132377 ttgaagg 132371

to top

>ref|NM_114153.1| Arabidopsis thaliana ATP binding / galactokinase/ kinase/
            phosphotransferase, alcohol group as acceptor AT3G42850
            mRNA, complete cds
          Length = 2895

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 577  tgctgttaacaatgctttgaaggcctcaacgcggaagttctcgtagatgggatgtctagt 636
            |||||| |||||||||||||| ||||  || ||||| ||||| || || |||||||||||
Sbjct: 2529 tgctgtcaacaatgctttgaaagcctgcacacggaaattctcataaattggatgtctagt 2470

to top

>gb|AC096866.2| Takifugu rubripes clone 247M18, complete sequence
          Length = 53580

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 122   cttgatctactggtggaatgaag 144
             |||||||||||||||||||||||
Sbjct: 38035 cttgatctactggtggaatgaag 38013

to top

>gb|AC018475.32| Homo sapiens 12 BAC RP11-490G8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152757

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 563    tcgtctgttttggctgctgttaacaa 588
              |||||||||| |||||||||||||||
Sbjct: 123829 tcgtctgtttgggctgctgttaacaa 123854

to top

>ref|NM_180143.3| Arabidopsis thaliana nucleotide binding AT2G47410 mRNA, complete cds
          Length = 5208

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 455  atttcttgtactagattcact 475
            |||||||||||||||||||||
Sbjct: 3837 atttcttgtactagattcact 3817

to top

>ref|XM_415031.1| PREDICTED: Gallus gallus similar to KIAA1264 protein (LOC416734),
            mRNA
          Length = 5343

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 541  ttctccaagcgctgacagttg 561
            |||||||||||||||||||||
Sbjct: 1569 ttctccaagcgctgacagttg 1549

to top

>gb|AY128365.1| Arabidopsis thaliana putative WD-40 repeat protein (At2g47410) mRNA,
            complete cds
          Length = 5218

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 455  atttcttgtactagattcact 475
            |||||||||||||||||||||
Sbjct: 3837 atttcttgtactagattcact 3817

to top

>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete
             sequence
          Length = 98937

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 455   atttcttgtactagattcact 475
             |||||||||||||||||||||
Sbjct: 93164 atttcttgtactagattcact 93184

to top

>gb|AC109271.10| Mus musculus chromosome 1, clone RP23-353I19, complete sequence
          Length = 221001

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 449    tgctggatttcttgtactagattc 472
              |||| |||||||||||||||||||
Sbjct: 183610 tgcttgatttcttgtactagattc 183587

to top

>gb|AC127593.4| Mus musculus BAC clone RP23-390G15 from chromosome 10, complete
            sequence
          Length = 214856

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 423  ctccatgctgcgaggtagtc 442
            ||||||||||||||||||||
Sbjct: 1290 ctccatgctgcgaggtagtc 1271

to top

>gb|AC133078.3| Mus musculus BAC clone RP24-444O21 from chromosome 10, complete
             sequence
          Length = 141420

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   ctccatgctgcgaggtagtc 442
             ||||||||||||||||||||
Sbjct: 66507 ctccatgctgcgaggtagtc 66526

to top

>gb|AC123028.4| Mus musculus BAC clone RP24-553H21 from chromosome 10, complete sequence
          Length = 175143

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 423    ctccatgctgcgaggtagtc 442
              ||||||||||||||||||||
Sbjct: 167059 ctccatgctgcgaggtagtc 167040

to top

>gb|AC122287.4| Mus musculus BAC clone RP23-253A15 from 1, complete sequence
          Length = 226926

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 449    tgctggatttcttgtactagattc 472
              |||| |||||||||||||||||||
Sbjct: 196664 tgcttgatttcttgtactagattc 196687

to top

>emb|AL358972.13| Human DNA sequence from clone RP11-347L18 on chromosome 6 Contains a
             novel gene, complete sequence
          Length = 172606

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 454   gatttcttgtactagattcactag 477
             |||||||||||||||||| |||||
Sbjct: 89252 gatttcttgtactagattaactag 89275

to top

>emb|AL158211.29| Human DNA sequence from clone RP11-573G6 on chromosome 10 Contains a
             ribosomal protein L31 (RPL31) pseudogene, the BUP gene for
             BUP protein, the BMI1 gene for B lymphoma Mo-MLV insertion
             region (mouse) (MGC12685), the 5' end of the SPAG6 gene
             for sperm associated antigen 6 (pf16, MGC26276,
             Repro-SA-1,DKFZp434I153), the 5' end of a novel gene and
             seven CpG islands, complete sequence
          Length = 138094

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   cagtgatctttgcaccaaat 412
             ||||||||||||||||||||
Sbjct: 88034 cagtgatctttgcaccaaat 88015

to top

>emb|CR450818.8| Zebrafish DNA sequence from clone DKEY-172M14 in linkage group 5,
             complete sequence
          Length = 150883

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 182   tcttgtcttgacaaatgttggaagtctt 209
             ||||||||||||| |||||| |||||||
Sbjct: 62674 tcttgtcttgacacatgttgaaagtctt 62647

to top

>gb|AC090647.6| Genomic sequence for Mus musculus, clone RP23-252I12, complete sequence
          Length = 139891

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctctgcaagtctgcaccaga 71
             ||||||||||||||||||||
Sbjct: 83746 ctctgcaagtctgcaccaga 83765

to top

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 97      acagaactactactacacca 116
               ||||||||||||||||||||
Sbjct: 1710755 acagaactactactacacca 1710736

to top

>gb|AY914874.1| Sinorhizobium meliloti plasmid pMBA19a CsrA-like protein, YacA-like
            protein, Rep(pMBA19a) (rep(pMBA19a)), KorA-like protein,
            and IncC-like protein genes, complete cds
          Length = 4532

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 214  tgccgaccgccatcggatct 233
            ||||||||||||||||||||
Sbjct: 2175 tgccgaccgccatcggatct 2156

to top

>gb|AC103778.2| Homo sapiens chromosome 8, clone RP11-463C14, complete sequence
          Length = 161500

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   gtctgttttggctgctgtta 584
             ||||||||||||||||||||
Sbjct: 95982 gtctgttttggctgctgtta 96001

to top

>gb|AC107301.10| Homo sapiens 3 BAC RP11-544A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 188000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    aatgttgacatttattgtat 90
             ||||||||||||||||||||
Sbjct: 15440 aatgttgacatttattgtat 15421

to top

>gb|AC090430.7| Mus Musculus Strain C57BL6/J chromosome 10 BAC, RP23-131G5, complete
             sequence
          Length = 185453

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   ctggtggaatgaagtgccac 150
             ||||||||||||||||||||
Sbjct: 87945 ctggtggaatgaagtgccac 87926

to top

>gb|AC005273.1|AC005273 Homo sapiens chromosome 17, clone hRPK.879_D_6, complete sequence
          Length = 122250

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 123   ttgatctactggtggaatgaagtgccac 150
             ||||||||||||||||||| || |||||
Sbjct: 88836 ttgatctactggtggaatgcagggccac 88809


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,885,235
Number of Sequences: 3902068
Number of extensions: 4885235
Number of successful extensions: 80950
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80806
Number of HSP's gapped (non-prelim): 138
length of query: 659
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 636
effective length of database: 17,143,297,704
effective search space: 10903137339744
effective search space used: 10903137339744
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result