ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016331.1| Zea mays clone Contig164 mRNA sequence 52 0.001
2gb|AF176040.1|AF176040 Mesembryanthemum crystallinum ubiquitin-c... 52 0.001
3gb|AY104017.1| Zea mays PCO119482 mRNA sequence 52 0.001
4gb|AF034946.1|AF034946 Zea mays ubiquitin conjugating enzyme (UB... 52 0.001
5ref|XM_464900.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.063
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.063
7dbj|AP005777.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.063
8dbj|AK121248.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.063
9dbj|AB074412.1| Oryza sativa (japonica cultivar-group) mRNA for ... 46 0.063
10gb|AY389716.1| Hyacinthus orientalis ubiquitin-conjugating enzym... 44 0.25
11gb|AY489135.1| Capsicum annuum ubiquitin-conjugating enzyme 8 mR... 44 0.25
12emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 ... 44 0.25
13gb|DQ249816.1| Capsicum annuum ubiquitin-conjugating enzyme E2 m... 44 0.25
14ref|NM_191104.1| Oryza sativa (japonica cultivar-group), predic... 42 0.98
15gb|DQ207855.1| Solanum tuberosum clone 078A09 ubiquitin-conjugat... 42 0.98
16dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.98
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.98
18dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.98
19dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.98
20dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.98
21dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.98
22dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.98
23gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, com... 40 3.9
24emb|AL158200.17| Human DNA sequence from clone RP11-278E11 on ch... 40 3.9
25emb|AL954384.11| Zebrafish DNA sequence from clone CH211-146L13 ... 40 3.9
26gb|DQ435606.1| Scylla serrata prophenoloxidase mRNA, complete cds 40 3.9
27ref|XM_677954.1| PREDICTED: Danio rerio similar to nonmuscle myo... 40 3.9
28emb|BX294368.7| Zebrafish DNA sequence from clone CH211-244N12 i... 40 3.9 
>gb|BT016331.1| Zea mays clone Contig164 mRNA sequence
          Length = 860

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 73/91 (80%)
 Strand = Plus / Minus

                                                                       
Query: 196 gtcagcccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggn 255
           ||||||||||||||||||| || |||||||| |  || |  ||||| ||||| |  ||| 
Sbjct: 548 gtcagcccatcgcgtacttctgcgtccagctgcgggccgtcgactcgtacttcggccggt 489

                                          
Query: 256 cgctcttgnacatgtgcgcaatctncgggac 286
           |  ||||| ||||||| ||||||| ||||||
Sbjct: 488 ccgtcttgtacatgtgggcaatctccgggac 458
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>gb|AF176040.1|AF176040 Mesembryanthemum crystallinum ubiquitin-conjugating enzyme UBC2
           (Ubc2) mRNA, complete cds
          Length = 809

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 199 agcccatcgcgtacttntgggtccagctcctngctg 234
           |||||||||| ||||| |||||||||||||| ||||
Sbjct: 525 agcccatcgcatacttctgggtccagctcctcgctg 490
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>gb|AY104017.1| Zea mays PCO119482 mRNA sequence
          Length = 885

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 73/91 (80%)
 Strand = Plus / Minus

                                                                       
Query: 196 gtcagcccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggn 255
           ||||||||||||||||||| || |||||||| |  || |  ||||| ||||| |  ||| 
Sbjct: 585 gtcagcccatcgcgtacttctgcgtccagctgcgggccgtcgactcgtacttcggccggt 526

                                          
Query: 256 cgctcttgnacatgtgcgcaatctncgggac 286
           |  ||||| ||||||| ||||||| ||||||
Sbjct: 525 ccgtcttgtacatgtgggcaatctccgggac 495
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>gb|AF034946.1|AF034946 Zea mays ubiquitin conjugating enzyme (UBC) mRNA, complete cds
          Length = 781

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 73/91 (80%)
 Strand = Plus / Minus

                                                                       
Query: 196 gtcagcccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggn 255
           ||||||||||||||||||| || |||||||| |  || |  ||||| ||||| |  ||| 
Sbjct: 488 gtcagcccatcgcgtacttctgcgtccagctgcgggccgtcgactcgtacttcggccggt 429

                                          
Query: 256 cgctcttgnacatgtgcgcaatctncgggac 286
           |  ||||| ||||||| ||||||| ||||||
Sbjct: 428 ccgtcttgtacatgtgggcaatctccgggac 398
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>ref|XM_464900.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 728

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 65/81 (80%)
 Strand = Plus / Minus

                                                                       
Query: 199 agcccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggncgc 258
           ||||||| || || || |||||||||||||| || | |||||| ||||| || ||  |  
Sbjct: 480 agcccatagcatatttctgggtccagctccttgcggtggactcgtacttggcccgatcag 421

                                
Query: 259 tcttgnacatgtgcgcaatct 279
           ||||| ||||||| |||||||
Sbjct: 420 tcttgtacatgtgagcaatct 400
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 65/81 (80%)
 Strand = Plus / Minus

                                                                           
Query: 199     agcccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggncgc 258
               ||||||| || || || |||||||||||||| || | |||||| ||||| || ||  |  
Sbjct: 9118306 agcccatagcatatttctgggtccagctccttgcggtggactcgtacttggcccgatcag 9118247

                                    
Query: 259     tcttgnacatgtgcgcaatct 279
               ||||| ||||||| |||||||
Sbjct: 9118246 tcttgtacatgtgagcaatct 9118226
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>dbj|AP005777.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0026F09
          Length = 124371

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 65/81 (80%)
 Strand = Plus / Minus

                                                                         
Query: 199   agcccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggncgc 258
             ||||||| || || || |||||||||||||| || | |||||| ||||| || ||  |  
Sbjct: 21069 agcccatagcatatttctgggtccagctccttgcggtggactcgtacttggcccgatcag 21010

                                  
Query: 259   tcttgnacatgtgcgcaatct 279
             ||||| ||||||| |||||||
Sbjct: 21009 tcttgtacatgtgagcaatct 20989
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>dbj|AK121248.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101B08, full
           insert sequence
          Length = 729

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 65/81 (80%)
 Strand = Plus / Minus

                                                                       
Query: 199 agcccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggncgc 258
           ||||||| || || || |||||||||||||| || | |||||| ||||| || ||  |  
Sbjct: 480 agcccatagcatatttctgggtccagctccttgcggtggactcgtacttggcccgatcag 421

                                
Query: 259 tcttgnacatgtgcgcaatct 279
           ||||| ||||||| |||||||
Sbjct: 420 tcttgtacatgtgagcaatct 400
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>dbj|AB074412.1| Oryza sativa (japonica cultivar-group) mRNA for
           ubiquitin-conjugating enzyme OsUBC5b, complete cds
          Length = 574

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 65/81 (80%)
 Strand = Plus / Minus

                                                                       
Query: 199 agcccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggncgc 258
           ||||||| || || || |||||||||||||| || | |||||| ||||| || ||  |  
Sbjct: 476 agcccatagcatatttctgggtccagctccttgcggtggactcgtacttggcccgatcag 417

                                
Query: 259 tcttgnacatgtgcgcaatct 279
           ||||| ||||||| |||||||
Sbjct: 416 tcttgtacatgtgagcaatct 396
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>gb|AY389716.1| Hyacinthus orientalis ubiquitin-conjugating enzyme 9 mRNA, partial
           cds
          Length = 650

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 201 cccatcgcgtacttntgggtccagctcct 229
           ||||| |||||||| ||||||||||||||
Sbjct: 420 cccatggcgtacttctgggtccagctcct 392
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>gb|AY489135.1| Capsicum annuum ubiquitin-conjugating enzyme 8 mRNA, complete cds
          Length = 713

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 201 cccatcgcgtacttntgggtccagctcct 229
           |||||||| ||||| ||||||||||||||
Sbjct: 502 cccatcgcatacttttgggtccagctcct 474
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>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the
             ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a
             eukaryotic translation initiation factor 3 subunit 6
             interacting protein (EIF3S6IP) pseudogene, the 3' end of
             the ZNF11B gene for zinc finger protein 11b (KOX 2), a
             novel gene (FLJ23327) and two CpG Islands, complete
             sequence
          Length = 146328

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 103   atcccatatagcagcagcagaa 124
             ||||||||||||||||||||||
Sbjct: 68175 atcccatatagcagcagcagaa 68154
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>gb|DQ249816.1| Capsicum annuum ubiquitin-conjugating enzyme E2 mRNA, complete cds
          Length = 678

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 201 cccatcgcgtacttntgggtccagctcct 229
           |||||||| ||||| ||||||||||||||
Sbjct: 513 cccatcgcatacttttgggtccagctcct 485
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>ref|NM_191104.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 447

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 63/79 (79%)
 Strand = Plus / Minus

                                                                       
Query: 201 cccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggncgctc 260
           ||||| || ||||| ||||||||||| |  ||||  | ||||||||| | |||| |  ||
Sbjct: 443 cccatggcatacttctgggtccagctgcgggctgtcgtctcatactttggacggtccgtc 384

                              
Query: 261 ttgnacatgtgcgcaatct 279
           ||| ||||||| |||||||
Sbjct: 383 ttgtacatgtgggcaatct 365
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>gb|DQ207855.1| Solanum tuberosum clone 078A09 ubiquitin-conjugating enzyme 8-like
           mRNA, complete cds
          Length = 757

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 201 cccatcgcgtacttntgggtccagctcc 228
           ||||| |||||||| |||||||||||||
Sbjct: 506 cccattgcgtacttttgggtccagctcc 479
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 153      agcgaagatggctccaacatc 173
                |||||||||||||||||||||
Sbjct: 27343812 agcgaagatggctccaacatc 27343792
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 63/79 (79%)
 Strand = Plus / Minus

                                                                            
Query: 201      cccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggncgctc 260
                ||||| || ||||| ||||||||||| |  ||||  | ||||||||| | |||| |  ||
Sbjct: 34912664 cccatggcatacttctgggtccagctgcgggctgtcgtctcatactttggacggtccgtc 34912605

                                   
Query: 261      ttgnacatgtgcgcaatct 279
                ||| ||||||| |||||||
Sbjct: 34912604 ttgtacatgtgggcaatct 34912586
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>dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1529_G03
          Length = 100635

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 63/79 (79%)
 Strand = Plus / Minus

                                                                         
Query: 201   cccatcgcgtacttntgggtccagctcctngctgnggactcatacttngcacggncgctc 260
             ||||| || ||||| ||||||||||| |  ||||  | ||||||||| | |||| |  ||
Sbjct: 42028 cccatggcatacttctgggtccagctgcgggctgtcgtctcatactttggacggtccgtc 41969

                                
Query: 261   ttgnacatgtgcgcaatct 279
             ||| ||||||| |||||||
Sbjct: 41968 ttgtacatgtgggcaatct 41950
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>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0686E06
          Length = 150474

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   agcgaagatggctccaacatc 173
             |||||||||||||||||||||
Sbjct: 86639 agcgaagatggctccaacatc 86619
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>dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G24, full
           insert sequence
          Length = 2183

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 153 agcgaagatggctccaacatc 173
           |||||||||||||||||||||
Sbjct: 59  agcgaagatggctccaacatc 79
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>dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M12, full
           insert sequence
          Length = 2433

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 153 agcgaagatggctccaacatc 173
           |||||||||||||||||||||
Sbjct: 251 agcgaagatggctccaacatc 271
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>dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F12, full
           insert sequence
          Length = 2276

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 153 agcgaagatggctccaacatc 173
           |||||||||||||||||||||
Sbjct: 60  agcgaagatggctccaacatc 80
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>gb|AC112998.15| Mus musculus chromosome 3, clone RP23-147E7, complete sequence
          Length = 203273

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 112    agcagcagcagaacaggaacaaag 135
              ||||||||||||| ||||||||||
Sbjct: 114362 agcagcagcagaagaggaacaaag 114385
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>emb|AL158200.17| Human DNA sequence from clone RP11-278E11 on chromosome Xp11.21-11.22
             Contains a novel gene and the gene for a novel protein
             similar to ubiquinol-cytochrome c reductase binding
             protein (UQCRB), complete sequence
          Length = 87538

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   gcagaacaggaacaaagata 138
             ||||||||||||||||||||
Sbjct: 70767 gcagaacaggaacaaagata 70748
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>emb|AL954384.11| Zebrafish DNA sequence from clone CH211-146L13 in linkage group 6,
             complete sequence
          Length = 162560

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   ggctccaacatcatcctcca 181
             ||||||||||||||||||||
Sbjct: 87199 ggctccaacatcatcctcca 87180
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>gb|DQ435606.1| Scylla serrata prophenoloxidase mRNA, complete cds
          Length = 2663

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  gcagcagcagaacaggaaca 132
            ||||||||||||||||||||
Sbjct: 1959 gcagcagcagaacaggaaca 1940
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>ref|XM_677954.1| PREDICTED: Danio rerio similar to nonmuscle myosin heavy chain
           (LOC555454), mRNA
          Length = 3705

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 162 ggctccaacatcatcctcca 181
           ||||||||||||||||||||
Sbjct: 669 ggctccaacatcatcctcca 650
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>emb|BX294368.7| Zebrafish DNA sequence from clone CH211-244N12 in linkage group 6,
             complete sequence
          Length = 147484

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 162   ggctccaacatcatcctcca 181
             ||||||||||||||||||||
Sbjct: 74737 ggctccaacatcatcctcca 74756


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,103,445
Number of Sequences: 3902068
Number of extensions: 2103445
Number of successful extensions: 34814
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34755
Number of HSP's gapped (non-prelim): 59
length of query: 295
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 273
effective length of database: 17,147,199,772
effective search space: 4681185537756
effective search space used: 4681185537756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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