Clone Name | rbasd2m23 |
---|---|
Clone Library Name | barley_pub |
>FMN2_MOUSE (Q9JL04) Formin-2| Length = 1567 Score = 30.4 bits (67), Expect = 4.7 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +1 Query: 406 DGVL*RNRGERACGCSHQGGSADDGGGVTCQRVPRQRQLQTPAGGVSGAVGSRWRG 573 DG L R+ G+ SH+GG A+D G PR + A G A+G +G Sbjct: 5 DGKLKRSAGD----ASHEGGGAEDAAG------PRDAETTKKASGSKKALGKHGKG 50
>PWP1_MOUSE (Q99LL5) Periodic tryptophan protein 1 homolog| Length = 501 Score = 30.4 bits (67), Expect = 4.7 Identities = 19/35 (54%), Positives = 21/35 (60%) Frame = -3 Query: 459 LVTAPACSFPSVSLQDAVGDIASLCHSRDMDEGDL 355 LVTA A F V + D +GD SL HSRDM G L Sbjct: 400 LVTASADKF--VKIWDILGDRPSLIHSRDMKMGVL 432
>TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand| and one amino acid protein 2) Length = 1055 Score = 30.0 bits (66), Expect = 6.2 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 3/43 (6%) Frame = -1 Query: 548 PETPPAGVWSCR*---RGTRWHVTPPPSSAEPPW*LHPHALSP 429 P PPA W R G W PPP PP P L+P Sbjct: 940 PAPPPAPAWPSRPVPRSGAHWSHGPPPPGMPPPAWRQPALLAP 982
>TRBL_AGRTU (P54913) Conjugal transfer protein trbL| Length = 395 Score = 30.0 bits (66), Expect = 6.2 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = +1 Query: 424 NRGERACGCSHQGGSADDGGGVTCQRVPRQRQLQTPAGGVSGAVGS--RWRGLHSPNSPA 597 NRG A + GG++ G + R L+ GG +GAVGS + + + SP + A Sbjct: 313 NRGFAAASAARAGGASLAGAAM--------RGLEAGVGGAAGAVGSAAKDKAIGSPGAYA 364 Query: 598 G*KGW*SRSSLAKSKL 645 G S LA +KL Sbjct: 365 G-----SMLGLANAKL 375
>SMAD7_RAT (O88406) Mothers against decapentaplegic homolog 7 (SMAD 7)| (Mothers against DPP homolog 7) (Smad7) Length = 426 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -3 Query: 216 PQINHQASLSRLACSSTYGMSRHSNVPCPPYARSRV 109 P + H + + RL C +YG V C P+ SR+ Sbjct: 166 PDLRHSSEVKRLCCCESYGKINPELVCCNPHHLSRL 201
>SMAD7_MOUSE (O35253) Mothers against decapentaplegic homolog 7 (SMAD 7)| (Mothers against DPP homolog 7) (Smad7) (Madh8) Length = 426 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -3 Query: 216 PQINHQASLSRLACSSTYGMSRHSNVPCPPYARSRV 109 P + H + + RL C +YG V C P+ SR+ Sbjct: 166 PDLRHSSEVKRLCCCESYGKINPELVCCNPHHLSRL 201
>SMAD7_HUMAN (O15105) Mothers against decapentaplegic homolog 7 (SMAD 7)| (Mothers against DPP homolog 7) (Smad7) (hSMAD7) Length = 426 Score = 29.6 bits (65), Expect = 8.0 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -3 Query: 216 PQINHQASLSRLACSSTYGMSRHSNVPCPPYARSRV 109 P + H + + RL C +YG V C P+ SR+ Sbjct: 166 PDLRHSSEVKRLCCCESYGKINPELVCCNPHHLSRL 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,903,319 Number of Sequences: 219361 Number of extensions: 2127312 Number of successful extensions: 5995 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 5643 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5986 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6086476506 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)