ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3b20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSBQ_SPIOL (P12301) Oxygen-evolving enhancer protein 3, chloropl... 37 0.012
2PSBQ2_MAIZE (Q41806) Oxygen-evolving enhancer protein 3-2, chlor... 35 0.044
3PSBQ1_MAIZE (Q41048) Oxygen-evolving enhancer protein 3-1, chlor... 35 0.044
4PSBQ1_ARATH (Q9XFT3) Oxygen-evolving enhancer protein 3-1, chlor... 35 0.044
5PSBQ2_ARATH (Q41932) Oxygen-evolving enhancer protein 3-2, chlor... 31 0.83
6PSBQ_ONOVI (O22591) Oxygen-evolving enhancer protein 3, chloropl... 29 4.1

>PSBQ_SPIOL (P12301) Oxygen-evolving enhancer protein 3, chloroplast precursor|
           (OEE3) (16 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 16 kDa subunit)
          Length = 232

 Score = 37.4 bits (85), Expect = 0.012
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = -1

Query: 138 PTEAEKYYGETKTVLGDVLAKLG 70
           PTEAEKYYG+T + + +VLAKLG
Sbjct: 210 PTEAEKYYGQTVSNINEVLAKLG 232



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>PSBQ2_MAIZE (Q41806) Oxygen-evolving enhancer protein 3-2, chloroplast|
           precursor (OEE3) (16 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 16 kDa subunit)
           (Ferredoxin-NADP reductase-binding protein) (BP)
          Length = 213

 Score = 35.4 bits (80), Expect = 0.044
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -1

Query: 132 EAEKYYGETKTVLGDVLAKLG 70
           EAEKY+  TK  LGDVLAKLG
Sbjct: 193 EAEKYFAATKDALGDVLAKLG 213



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>PSBQ1_MAIZE (Q41048) Oxygen-evolving enhancer protein 3-1, chloroplast|
           precursor (OEE3) (16 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 16 kDa subunit)
          Length = 217

 Score = 35.4 bits (80), Expect = 0.044
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = -1

Query: 132 EAEKYYGETKTVLGDVLAKLG 70
           EAEKY+  TK  LGDVLAKLG
Sbjct: 197 EAEKYFAATKDALGDVLAKLG 217



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>PSBQ1_ARATH (Q9XFT3) Oxygen-evolving enhancer protein 3-1, chloroplast|
           precursor (OEE3) (16 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 16 kDa subunit)
          Length = 223

 Score = 35.4 bits (80), Expect = 0.044
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = -1

Query: 138 PTEAEKYYGETKTVLGDVLAKLG 70
           P++AEKYY ET + L +VLAKLG
Sbjct: 201 PSQAEKYYAETVSALNEVLAKLG 223



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>PSBQ2_ARATH (Q41932) Oxygen-evolving enhancer protein 3-2, chloroplast|
           precursor (OEE3) (16 kDa subunit of oxygen evolving
           system of photosystem II) (OEC 16 kDa subunit)
          Length = 230

 Score = 31.2 bits (69), Expect = 0.83
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 132 EAEKYYGETKTVLGDVLAKLG 70
           +AEKYY ET + L +VLAKLG
Sbjct: 210 DAEKYYSETVSSLNNVLAKLG 230



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>PSBQ_ONOVI (O22591) Oxygen-evolving enhancer protein 3, chloroplast precursor|
           (OEE3) (16 kDa subunit of oxygen evolving system of
           photosystem II) (OEC 16 kDa subunit)
          Length = 231

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 132 EAEKYYGETKTVLGDVLAKLG 70
           +AEKYY +  + L DVL+K+G
Sbjct: 211 QAEKYYADAVSTLNDVLSKIG 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,133,663
Number of Sequences: 219361
Number of extensions: 219967
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 80,573,946
effective HSP length: 22
effective length of database: 75,748,004
effective search space used: 1817952096
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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