ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3b20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_478627.1| Oryza sativa (japonica cultivar-group), mRNA 54 1e-04
2ref|XM_506400.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 1e-04
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
4dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic D... 54 1e-04
5dbj|AK099127.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 1e-04
6dbj|AK069170.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 1e-04
7dbj|AK058793.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 1e-04
8emb|Z26824.1|ZMFNRBP Zea mays gene for Ferredoxin-NADP reductase... 48 0.007
9gb|AY103825.1| Zea mays PCO072668 mRNA sequence 48 0.007
10gb|M87435.1|ZEAOE17 Zea mays precursor of the oxygen evolving co... 48 0.007
11emb|BX855598.22| Zebrafish DNA sequence from clone DKEY-52J13 in... 42 0.43
12gb|AC021498.12| Homo sapiens chromosome 8, clone RP11-127H5, com... 42 0.43
13emb|BX842696.13| Zebrafish DNA sequence from clone DKEY-165P1 in... 42 0.43
14dbj|AP004711.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 0.43
15gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 1.7
16emb|AL161734.12| Human DNA sequence from clone RP11-33M22 on chr... 40 1.7
17emb|X06826.2|ATVIRB Agrobacterium tumefaciens plasmid pTil5955 40 1.7
18emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 1.7
19gb|AF242881.1|AF242881 Agrobacterium tumefaciens octopine-type T... 40 1.7
20gb|AF223391.1|AF239258S3 Homo sapiens calcium channel alpha1E su... 40 1.7
21emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 1.7
22gb|AC153974.9| Mus musculus 10 BAC RP24-462I5 (Roswell Park Canc... 38 6.7
23gb|AC140680.4| Mus musculus BAC clone RP24-548A12 from chromosom... 38 6.7
24ref|XM_954053.1| Neurospora crassa OR74A hypothetical protein (N... 38 6.7
25ref|XM_331593.1| Neurospora crassa OR74A hypothetical protein (N... 38 6.7
26gb|AC141875.4| Mus musculus BAC clone RP24-316O22 from chromosom... 38 6.7
27gb|AC140678.2| Mus musculus BAC clone RP24-553I16 from chromosom... 38 6.7
28gb|AC129192.4| Mus musculus BAC clone RP24-113B19 from chromosom... 38 6.7
29gb|AC122295.4| Mus musculus BAC clone RP23-263E3 from 13, comple... 38 6.7
30gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, comple... 38 6.7
31gb|AC124521.2| Mus musculus BAC clone RP23-395M9 from 5, complet... 38 6.7
32gb|AC110259.17| Mus musculus chromosome 5, clone RP23-287A8, com... 38 6.7
33gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete s... 38 6.7
34gb|AC137971.4| Mus musculus, clone RP23-135B1, complete sequence 38 6.7
35emb|BX295539.1|NCB1D14 Neurospora crassa genomic DNA, BAC contig... 38 6.7
36emb|AL096788.1|SPBC582 S.pombe chromosome II cosmid c582 38 6.7
37emb|BX511195.5| Zebrafish DNA sequence from clone DKEYP-57D12 in... 38 6.7
38gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Can... 38 6.7
39gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, compl... 38 6.7
40gb|AC083813.29| Homo sapiens 12q BAC RP11-304C10 (Roswell Park C... 38 6.7
41gb|AC091894.2| Homo sapiens chromosome 5 clone RP11-138J23, comp... 38 6.7
42emb|BX664616.16| Zebrafish DNA sequence from clone DKEY-231P15 i... 38 6.7
43gb|AC147620.5| Mus musculus BAC clone RP24-285H21 from chromosom... 38 6.7
44emb|BX005102.6| Zebrafish DNA sequence from clone CH211-105H13 i... 38 6.7
45ref|NM_001021080.1| Schizosaccharomyces pombe 972h- hypothetical... 38 6.7
46dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 38 6.7
47gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complet... 38 6.7
48gb|AC022075.29| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Ca... 38 6.7
49gb|AC114493.3| Homo sapiens chromosome 1 clone RP11-336O20, comp... 38 6.7
50gb|AC005157.1|AC005157 Homo sapiens PAC clone RP5-1108A12 from 1... 38 6.7
51emb|CR956631.17| M.truncatula DNA sequence from clone MTH2-65L9 ... 38 6.7
52dbj|AB088351.1| Gibberella zeae glu, rga genes for putative beta... 38 6.7
53dbj|AP000872.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 6.7
54gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 38 6.7
55dbj|AB026678.1| Gallus gallus Wpkci-8 gene, complete cds 38 6.7
56gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 38 6.7
57emb|BX000524.6| Zebrafish DNA sequence from clone DKEY-10H3, com... 38 6.7
58gb|AC148329.3| Mus musculus BAC clone RP24-176F13 from Y, comple... 38 6.7
59gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, comple... 38 6.7
60dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone... 38 6.7
61dbj|AB026679.1| Gallus gallus Wpkci-7 and Wpkci genes, partial cds 38 6.7

>ref|XM_478627.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 847

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 67  ctagcctagcttggcgaggacatcgcc 93
           |||||||||||||||||||||||||||
Sbjct: 713 ctagcctagcttggcgaggacatcgcc 687



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>ref|XM_506400.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1582_D10.6 mRNA
          Length = 962

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 67  ctagcctagcttggcgaggacatcgcc 93
           |||||||||||||||||||||||||||
Sbjct: 713 ctagcctagcttggcgaggacatcgcc 687



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 67       ctagcctagcttggcgaggacatcgcc 93
                |||||||||||||||||||||||||||
Sbjct: 21522205 ctagcctagcttggcgaggacatcgcc 21522179



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>dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1582_D10
          Length = 103475

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 67    ctagcctagcttggcgaggacatcgcc 93
             |||||||||||||||||||||||||||
Sbjct: 59989 ctagcctagcttggcgaggacatcgcc 59963



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>dbj|AK099127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045A04, full
           insert sequence
          Length = 847

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 67  ctagcctagcttggcgaggacatcgcc 93
           |||||||||||||||||||||||||||
Sbjct: 713 ctagcctagcttggcgaggacatcgcc 687



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>dbj|AK069170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I02, full
           insert sequence
          Length = 962

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 67  ctagcctagcttggcgaggacatcgcc 93
           |||||||||||||||||||||||||||
Sbjct: 713 ctagcctagcttggcgaggacatcgcc 687



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>dbj|AK058793.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G03, full
           insert sequence
          Length = 688

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 67  ctagcctagcttggcgaggacatcgcc 93
           |||||||||||||||||||||||||||
Sbjct: 582 ctagcctagcttggcgaggacatcgcc 556



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>emb|Z26824.1|ZMFNRBP Zea mays gene for Ferredoxin-NADP reductase binding protein
          Length = 1760

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 66   tctagcctagcttggcgaggacatcgcc 93
            ||||||||||||||||||| ||||||||
Sbjct: 1660 tctagcctagcttggcgagaacatcgcc 1633



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>gb|AY103825.1| Zea mays PCO072668 mRNA sequence
          Length = 1009

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 66  tctagcctagcttggcgaggacatcgcc 93
           ||||||||||||||||||| ||||||||
Sbjct: 758 tctagcctagcttggcgagaacatcgcc 731



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>gb|M87435.1|ZEAOE17 Zea mays precursor of the oxygen evolving complex 17 kDa protein
           mRNA, complete cds
          Length = 810

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 66  tctagcctagcttggcgaggacatcgcc 93
           ||||||||||||||||||| ||||||||
Sbjct: 702 tctagcctagcttggcgagaacatcgcc 675



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>emb|BX855598.22| Zebrafish DNA sequence from clone DKEY-52J13 in linkage group 13,
              complete sequence
          Length = 209449

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     caaatatgaacaaaacataaa 30
              |||||||||||||||||||||
Sbjct: 152189 caaatatgaacaaaacataaa 152169



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>gb|AC021498.12| Homo sapiens chromosome 8, clone RP11-127H5, complete sequence
          Length = 160883

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    tatgaacaaaacataaaaggc 34
             |||||||||||||||||||||
Sbjct: 99002 tatgaacaaaacataaaaggc 98982



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>emb|BX842696.13| Zebrafish DNA sequence from clone DKEY-165P1 in linkage group 13,
             complete sequence
          Length = 216185

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    caaatatgaacaaaacataaa 30
             |||||||||||||||||||||
Sbjct: 32572 caaatatgaacaaaacataaa 32552



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>dbj|AP004711.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1568A9, complete
             sequence
          Length = 150485

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    tatgaacaaaacataaaaggc 34
             |||||||||||||||||||||
Sbjct: 92393 tatgaacaaaacataaaaggc 92373



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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 110     tcgccgtagtacttctcggc 129
               ||||||||||||||||||||
Sbjct: 2698418 tcgccgtagtacttctcggc 2698399



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>emb|AL161734.12| Human DNA sequence from clone RP11-33M22 on chromosome 1q25.2-31.2
             Contains the 3' end of the CACNA1E gene for calcium
             channel voltage-dependent alpha 1E subunit, complete
             sequence
          Length = 167099

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     ttccaaatatgaacaaaacataaa 30
             ||||||||||||||||||| ||||
Sbjct: 83834 ttccaaatatgaacaaaacttaaa 83857



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>emb|X06826.2|ATVIRB Agrobacterium tumefaciens plasmid pTil5955
          Length = 42775

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    agcttggcgaggacatcgccgaga 97
             ||||||||||||||||| ||||||
Sbjct: 20165 agcttggcgaggacatcaccgaga 20142



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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 110     tcgccgtagtacttctcggc 129
               ||||||||||||||||||||
Sbjct: 1685036 tcgccgtagtacttctcggc 1685055



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>gb|AF242881.1|AF242881 Agrobacterium tumefaciens octopine-type Ti plasmid, complete sequence
          Length = 194140

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 74     agcttggcgaggacatcgccgaga 97
              ||||||||||||||||| ||||||
Sbjct: 163634 agcttggcgaggacatcaccgaga 163611



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>gb|AF223391.1|AF239258S3 Homo sapiens calcium channel alpha1E subunit (CACNA1E) gene, exons 7-49,
              and partial cds, alternatively spliced
          Length = 316704

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 7      ttccaaatatgaacaaaacataaa 30
              ||||||||||||||||||| ||||
Sbjct: 241588 ttccaaatatgaacaaaacttaaa 241611



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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 79      ggcgaggacatcgccgagaa 98
               ||||||||||||||||||||
Sbjct: 1695163 ggcgaggacatcgccgagaa 1695182



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>gb|AC153974.9| Mus musculus 10 BAC RP24-462I5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 162977

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     ggccattatgtggatccat 66
              |||||||||||||||||||
Sbjct: 132339 ggccattatgtggatccat 132321



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>gb|AC140680.4| Mus musculus BAC clone RP24-548A12 from chromosome Y, complete sequence
          Length = 222176

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     caaaacataaaaggcctga 38
              |||||||||||||||||||
Sbjct: 211506 caaaacataaaaggcctga 211488



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>ref|XM_954053.1| Neurospora crassa OR74A hypothetical protein (NCU09202.1) partial
           mRNA
          Length = 1737

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  gaggacatcgccgagaaca 100
           |||||||||||||||||||
Sbjct: 232 gaggacatcgccgagaaca 250



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>ref|XM_331593.1| Neurospora crassa OR74A hypothetical protein (NCU09202.1) partial
           mRNA
          Length = 1737

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  gaggacatcgccgagaaca 100
           |||||||||||||||||||
Sbjct: 232 gaggacatcgccgagaaca 250



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>gb|AC141875.4| Mus musculus BAC clone RP24-316O22 from chromosome Y, complete sequence
          Length = 170988

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     caaaacataaaaggcctga 38
              |||||||||||||||||||
Sbjct: 149381 caaaacataaaaggcctga 149363



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>gb|AC140678.2| Mus musculus BAC clone RP24-553I16 from chromosome Y, complete sequence
          Length = 161612

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     caaaacataaaaggcctga 38
              |||||||||||||||||||
Sbjct: 123552 caaaacataaaaggcctga 123534



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>gb|AC129192.4| Mus musculus BAC clone RP24-113B19 from chromosome 5, complete sequence
          Length = 170410

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 11     aaatatgaacaaaacataaaagg 33
              ||||||||||| |||||||||||
Sbjct: 146255 aaatatgaacagaacataaaagg 146233



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>gb|AC122295.4| Mus musculus BAC clone RP23-263E3 from 13, complete sequence
          Length = 200289

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     atgaacaaaacataaaagg 33
              |||||||||||||||||||
Sbjct: 181814 atgaacaaaacataaaagg 181832



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>gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, complete sequence
          Length = 228614

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    caaatatgaacaaaacata 28
             |||||||||||||||||||
Sbjct: 65810 caaatatgaacaaaacata 65792



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>gb|AC124521.2| Mus musculus BAC clone RP23-395M9 from 5, complete sequence
          Length = 184380

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 11    aaatatgaacaaaacataaaagg 33
             ||||||||| |||||||||||||
Sbjct: 17834 aaatatgaataaaacataaaagg 17812



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>gb|AC110259.17| Mus musculus chromosome 5, clone RP23-287A8, complete sequence
          Length = 230585

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 11    aaatatgaacaaaacataaaagg 33
             ||||||||| |||||||||||||
Sbjct: 36778 aaatatgaataaaacataaaagg 36800



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>gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete sequence
          Length = 116591

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    atgaacaaaacataaaagg 33
             |||||||||||||||||||
Sbjct: 73039 atgaacaaaacataaaagg 73057



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>gb|AC137971.4| Mus musculus, clone RP23-135B1, complete sequence
          Length = 224801

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 11     aaatatgaacaaaacataaaagg 33
              ||||||||||| |||||||||||
Sbjct: 176516 aaatatgaacagaacataaaagg 176494



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>emb|BX295539.1|NCB1D14 Neurospora crassa genomic DNA, BAC contig B1D14
          Length = 138898

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    gaggacatcgccgagaaca 100
             |||||||||||||||||||
Sbjct: 57790 gaggacatcgccgagaaca 57808



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>emb|AL096788.1|SPBC582 S.pombe chromosome II cosmid c582
          Length = 27999

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   aacataaaaggcctgaaag 41
            |||||||||||||||||||
Sbjct: 8690 aacataaaaggcctgaaag 8708



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>emb|BX511195.5| Zebrafish DNA sequence from clone DKEYP-57D12 in linkage group 17,
             complete sequence
          Length = 79527

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    caaatatgaacaaaacata 28
             |||||||||||||||||||
Sbjct: 76706 caaatatgaacaaaacata 76688



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>gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 217249

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     ggccattatgtggatccat 66
              |||||||||||||||||||
Sbjct: 171607 ggccattatgtggatccat 171625



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>gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, complete sequence
          Length = 91296

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    atatgaacaaaacataaaa 31
             |||||||||||||||||||
Sbjct: 23999 atatgaacaaaacataaaa 24017



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>gb|AC083813.29| Homo sapiens 12q BAC RP11-304C10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 216123

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     aaacataaaaggcctgaaa 40
              |||||||||||||||||||
Sbjct: 155085 aaacataaaaggcctgaaa 155067



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>gb|AC091894.2| Homo sapiens chromosome 5 clone RP11-138J23, complete sequence
          Length = 175552

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    atatgaacaaaacataaaa 31
             |||||||||||||||||||
Sbjct: 15810 atatgaacaaaacataaaa 15792



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>emb|BX664616.16| Zebrafish DNA sequence from clone DKEY-231P15 in linkage group 8,
             complete sequence
          Length = 193090

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    caaatatgaacaaaacata 28
             |||||||||||||||||||
Sbjct: 31469 caaatatgaacaaaacata 31487



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>gb|AC147620.5| Mus musculus BAC clone RP24-285H21 from chromosome 13, complete sequence
          Length = 172051

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     atgaacaaaacataaaagg 33
              |||||||||||||||||||
Sbjct: 129186 atgaacaaaacataaaagg 129168



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>emb|BX005102.6| Zebrafish DNA sequence from clone CH211-105H13 in linkage group 8,
              complete sequence
          Length = 154770

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     caaatatgaacaaaacata 28
              |||||||||||||||||||
Sbjct: 104208 caaatatgaacaaaacata 104190



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>ref|NM_001021080.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC582.04c),
           partial mRNA
          Length = 1806

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 23  aacataaaaggcctgaaag 41
           |||||||||||||||||||
Sbjct: 597 aacataaaaggcctgaaag 579



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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 114     cgtagtacttctcggcctc 132
               |||||||||||||||||||
Sbjct: 1142282 cgtagtacttctcggcctc 1142264



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>gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complete sequence
          Length = 182776

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    aaacataaaaggcctgaaa 40
             |||||||||||||||||||
Sbjct: 76812 aaacataaaaggcctgaaa 76794



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>gb|AC022075.29| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 168351

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    aaaacataaaaggcctgaa 39
             |||||||||||||||||||
Sbjct: 93119 aaaacataaaaggcctgaa 93137



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>gb|AC114493.3| Homo sapiens chromosome 1 clone RP11-336O20, complete sequence
          Length = 179221

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     ttccaaatatgaacaaaac 25
             |||||||||||||||||||
Sbjct: 45183 ttccaaatatgaacaaaac 45201



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>gb|AC005157.1|AC005157 Homo sapiens PAC clone RP5-1108A12 from 14q24.3, complete sequence
          Length = 164275

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 28  aaaaggcctgaaagcaaca 46
           |||||||||||||||||||
Sbjct: 291 aaaaggcctgaaagcaaca 309



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>emb|CR956631.17| M.truncatula DNA sequence from clone MTH2-65L9 on chromosome 3, complete
              sequence
          Length = 126227

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 14     tatgaacaaaacataaaag 32
              |||||||||||||||||||
Sbjct: 120363 tatgaacaaaacataaaag 120381



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>dbj|AB088351.1| Gibberella zeae glu, rga genes for putative beta-1,3-glucosidase,
           putative rhamnogalacturonan acetyltransferase, complete
           cds
          Length = 3411

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 111 cgccgtagtacttctcggcctcggtgg 137
           ||||| ||||||||||| |||||||||
Sbjct: 153 cgccgaagtacttctcgacctcggtgg 179



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>dbj|AP000872.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-727A20, complete
             sequences
          Length = 157330

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 6     cttccaaatatgaacaaaacata 28
             ||||||||||||||||| |||||
Sbjct: 98374 cttccaaatatgaacaagacata 98352



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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 103     cttggtctcgccgtagtacttctcggc 129
               |||||||| |||||||||||| |||||
Sbjct: 1190113 cttggtcttgccgtagtacttgtcggc 1190139



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>dbj|AB026678.1| Gallus gallus Wpkci-8 gene, complete cds
          Length = 5088

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   atatgaacaaaacataaaa 31
            |||||||||||||||||||
Sbjct: 4039 atatgaacaaaacataaaa 4057



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 79      ggcgaggacatcgccgaga 97
               |||||||||||||||||||
Sbjct: 3502352 ggcgaggacatcgccgaga 3502334



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>emb|BX000524.6| Zebrafish DNA sequence from clone DKEY-10H3, complete sequence
          Length = 188685

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aaatatgaacaaaacataa 29
             |||||||||||||||||||
Sbjct: 94775 aaatatgaacaaaacataa 94793



 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aaatatgaacaaaacataa 29
             |||||||||||||||||||
Sbjct: 23260 aaatatgaacaaaacataa 23278



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>gb|AC148329.3| Mus musculus BAC clone RP24-176F13 from Y, complete sequence
          Length = 149159

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    caaaacataaaaggcctga 38
             |||||||||||||||||||
Sbjct: 25189 caaaacataaaaggcctga 25171



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>gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, complete sequence
          Length = 194385

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    caaatatgaacaaaacata 28
             |||||||||||||||||||
Sbjct: 92861 caaatatgaacaaaacata 92879



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>dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT36C05, TM0215b,
             complete sequence
          Length = 84914

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    aacaaaacataaaaggcct 36
             |||||||||||||||||||
Sbjct: 66465 aacaaaacataaaaggcct 66483



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>dbj|AB026679.1| Gallus gallus Wpkci-7 and Wpkci genes, partial cds
          Length = 5635

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   atatgaacaaaacataaaa 31
            |||||||||||||||||||
Sbjct: 2543 atatgaacaaaacataaaa 2561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,083,896
Number of Sequences: 3902068
Number of extensions: 1083896
Number of successful extensions: 85468
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85128
Number of HSP's gapped (non-prelim): 340
length of query: 141
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 120
effective length of database: 17,151,101,840
effective search space: 2058132220800
effective search space used: 2058132220800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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