Clone Information

BLAST Search Result

Clone Name	rbasd3b20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_478627.1\| Oryza sativa (japonica cultivar-group), mRNA	54	1e-04
2	ref\|XM_506400.1\| PREDICTED Oryza sativa (japonica cultivar-group...	54	1e-04
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	54	1e-04
4	dbj\|AP003838.3\| Oryza sativa (japonica cultivar-group) genomic D...	54	1e-04
5	dbj\|AK099127.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	1e-04
6	dbj\|AK069170.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	1e-04
7	dbj\|AK058793.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	54	1e-04
8	emb\|Z26824.1\|ZMFNRBP Zea mays gene for Ferredoxin-NADP reductase...	48	0.007
9	gb\|AY103825.1\| Zea mays PCO072668 mRNA sequence	48	0.007
10	gb\|M87435.1\|ZEAOE17 Zea mays precursor of the oxygen evolving co...	48	0.007
11	emb\|BX855598.22\| Zebrafish DNA sequence from clone DKEY-52J13 in...	42	0.43
12	gb\|AC021498.12\| Homo sapiens chromosome 8, clone RP11-127H5, com...	42	0.43
13	emb\|BX842696.13\| Zebrafish DNA sequence from clone DKEY-165P1 in...	42	0.43
14	dbj\|AP004711.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	42	0.43
15	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	1.7
16	emb\|AL161734.12\| Human DNA sequence from clone RP11-33M22 on chr...	40	1.7
17	emb\|X06826.2\|ATVIRB Agrobacterium tumefaciens plasmid pTil5955	40	1.7
18	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	1.7
19	gb\|AF242881.1\|AF242881 Agrobacterium tumefaciens octopine-type T...	40	1.7
20	gb\|AF223391.1\|AF239258S3 Homo sapiens calcium channel alpha1E su...	40	1.7
21	emb\|CR936257.1\| Natronomonas pharaonis DSM 2160 complete genome	40	1.7
22	gb\|AC153974.9\| Mus musculus 10 BAC RP24-462I5 (Roswell Park Canc...	38	6.7
23	gb\|AC140680.4\| Mus musculus BAC clone RP24-548A12 from chromosom...	38	6.7
24	ref\|XM_954053.1\| Neurospora crassa OR74A hypothetical protein (N...	38	6.7
25	ref\|XM_331593.1\| Neurospora crassa OR74A hypothetical protein (N...	38	6.7
26	gb\|AC141875.4\| Mus musculus BAC clone RP24-316O22 from chromosom...	38	6.7
27	gb\|AC140678.2\| Mus musculus BAC clone RP24-553I16 from chromosom...	38	6.7
28	gb\|AC129192.4\| Mus musculus BAC clone RP24-113B19 from chromosom...	38	6.7
29	gb\|AC122295.4\| Mus musculus BAC clone RP23-263E3 from 13, comple...	38	6.7
30	gb\|AC122924.2\| Mus musculus BAC clone RP23-39M16 from 12, comple...	38	6.7
31	gb\|AC124521.2\| Mus musculus BAC clone RP23-395M9 from 5, complet...	38	6.7
32	gb\|AC110259.17\| Mus musculus chromosome 5, clone RP23-287A8, com...	38	6.7
33	gb\|AC146704.8\| Medicago truncatula clone mth2-107f11, complete s...	38	6.7
34	gb\|AC137971.4\| Mus musculus, clone RP23-135B1, complete sequence	38	6.7
35	emb\|BX295539.1\|NCB1D14 Neurospora crassa genomic DNA, BAC contig...	38	6.7
36	emb\|AL096788.1\|SPBC582 S.pombe chromosome II cosmid c582	38	6.7
37	emb\|BX511195.5\| Zebrafish DNA sequence from clone DKEYP-57D12 in...	38	6.7
38	gb\|AC153549.5\| Mus musculus 10 BAC RP23-222O23 (Roswell Park Can...	38	6.7
39	gb\|AC091966.3\| Homo sapiens chromosome 5 clone RP11-489E3, compl...	38	6.7
40	gb\|AC083813.29\| Homo sapiens 12q BAC RP11-304C10 (Roswell Park C...	38	6.7
41	gb\|AC091894.2\| Homo sapiens chromosome 5 clone RP11-138J23, comp...	38	6.7
42	emb\|BX664616.16\| Zebrafish DNA sequence from clone DKEY-231P15 i...	38	6.7
43	gb\|AC147620.5\| Mus musculus BAC clone RP24-285H21 from chromosom...	38	6.7
44	emb\|BX005102.6\| Zebrafish DNA sequence from clone CH211-105H13 i...	38	6.7
45	ref\|NM_001021080.1\| Schizosaccharomyces pombe 972h- hypothetical...	38	6.7
46	dbj\|AP006878.1\| Thermococcus kodakarensis KOD1 DNA, complete genome	38	6.7
47	gb\|AC016748.3\| Homo sapiens BAC clone RP11-494M7 from 2, complet...	38	6.7
48	gb\|AC022075.29\| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Ca...	38	6.7
49	gb\|AC114493.3\| Homo sapiens chromosome 1 clone RP11-336O20, comp...	38	6.7
50	gb\|AC005157.1\|AC005157 Homo sapiens PAC clone RP5-1108A12 from 1...	38	6.7
51	emb\|CR956631.17\| M.truncatula DNA sequence from clone MTH2-65L9 ...	38	6.7
52	dbj\|AB088351.1\| Gibberella zeae glu, rga genes for putative beta...	38	6.7
53	dbj\|AP000872.5\| Homo sapiens genomic DNA, chromosome 11q clone:R...	38	6.7
54	gb\|CP000085.1\| Burkholderia thailandensis E264 chromosome II, co...	38	6.7
55	dbj\|AB026678.1\| Gallus gallus Wpkci-8 gene, complete cds	38	6.7
56	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	38	6.7
57	emb\|BX000524.6\| Zebrafish DNA sequence from clone DKEY-10H3, com...	38	6.7
58	gb\|AC148329.3\| Mus musculus BAC clone RP24-176F13 from Y, comple...	38	6.7
59	gb\|AC147029.3\| Mus musculus BAC clone RP23-239P5 from 12, comple...	38	6.7
60	dbj\|AP006372.1\| Lotus japonicus genomic DNA, chromosome 1, clone...	38	6.7
61	dbj\|AB026679.1\| Gallus gallus Wpkci-7 and Wpkci genes, partial cds	38	6.7

>ref|XM_478627.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 847

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 67  ctagcctagcttggcgaggacatcgcc 93
           |||||||||||||||||||||||||||
Sbjct: 713 ctagcctagcttggcgaggacatcgcc 687

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>ref|XM_506400.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1582_D10.6 mRNA
          Length = 962

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 67  ctagcctagcttggcgaggacatcgcc 93
           |||||||||||||||||||||||||||
Sbjct: 713 ctagcctagcttggcgaggacatcgcc 687

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 67       ctagcctagcttggcgaggacatcgcc 93
                |||||||||||||||||||||||||||
Sbjct: 21522205 ctagcctagcttggcgaggacatcgcc 21522179

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>dbj|AP003838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1582_D10
          Length = 103475

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                        
Query: 67    ctagcctagcttggcgaggacatcgcc 93
             |||||||||||||||||||||||||||
Sbjct: 59989 ctagcctagcttggcgaggacatcgcc 59963

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>dbj|AK099127.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023045A04, full
           insert sequence
          Length = 847

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 67  ctagcctagcttggcgaggacatcgcc 93
           |||||||||||||||||||||||||||
Sbjct: 713 ctagcctagcttggcgaggacatcgcc 687

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>dbj|AK069170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004I02, full
           insert sequence
          Length = 962

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 67  ctagcctagcttggcgaggacatcgcc 93
           |||||||||||||||||||||||||||
Sbjct: 713 ctagcctagcttggcgaggacatcgcc 687

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>dbj|AK058793.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-G03, full
           insert sequence
          Length = 688

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 67  ctagcctagcttggcgaggacatcgcc 93
           |||||||||||||||||||||||||||
Sbjct: 582 ctagcctagcttggcgaggacatcgcc 556

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>emb|Z26824.1|ZMFNRBP Zea mays gene for Ferredoxin-NADP reductase binding protein
          Length = 1760

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 66   tctagcctagcttggcgaggacatcgcc 93
            ||||||||||||||||||| ||||||||
Sbjct: 1660 tctagcctagcttggcgagaacatcgcc 1633

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>gb|AY103825.1| Zea mays PCO072668 mRNA sequence
          Length = 1009

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 66  tctagcctagcttggcgaggacatcgcc 93
           ||||||||||||||||||| ||||||||
Sbjct: 758 tctagcctagcttggcgagaacatcgcc 731

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>gb|M87435.1|ZEAOE17 Zea mays precursor of the oxygen evolving complex 17 kDa protein
           mRNA, complete cds
          Length = 810

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 66  tctagcctagcttggcgaggacatcgcc 93
           ||||||||||||||||||| ||||||||
Sbjct: 702 tctagcctagcttggcgagaacatcgcc 675

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>emb|BX855598.22| Zebrafish DNA sequence from clone DKEY-52J13 in linkage group 13,
              complete sequence
          Length = 209449

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 10     caaatatgaacaaaacataaa 30
              |||||||||||||||||||||
Sbjct: 152189 caaatatgaacaaaacataaa 152169

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>gb|AC021498.12| Homo sapiens chromosome 8, clone RP11-127H5, complete sequence
          Length = 160883

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    tatgaacaaaacataaaaggc 34
             |||||||||||||||||||||
Sbjct: 99002 tatgaacaaaacataaaaggc 98982

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>emb|BX842696.13| Zebrafish DNA sequence from clone DKEY-165P1 in linkage group 13,
             complete sequence
          Length = 216185

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    caaatatgaacaaaacataaa 30
             |||||||||||||||||||||
Sbjct: 32572 caaatatgaacaaaacataaa 32552

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>dbj|AP004711.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1568A9, complete
             sequence
          Length = 150485

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    tatgaacaaaacataaaaggc 34
             |||||||||||||||||||||
Sbjct: 92393 tatgaacaaaacataaaaggc 92373

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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 110     tcgccgtagtacttctcggc 129
               ||||||||||||||||||||
Sbjct: 2698418 tcgccgtagtacttctcggc 2698399

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>emb|AL161734.12| Human DNA sequence from clone RP11-33M22 on chromosome 1q25.2-31.2
             Contains the 3' end of the CACNA1E gene for calcium
             channel voltage-dependent alpha 1E subunit, complete
             sequence
          Length = 167099

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     ttccaaatatgaacaaaacataaa 30
             ||||||||||||||||||| ||||
Sbjct: 83834 ttccaaatatgaacaaaacttaaa 83857

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>emb|X06826.2|ATVIRB Agrobacterium tumefaciens plasmid pTil5955
          Length = 42775

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    agcttggcgaggacatcgccgaga 97
             ||||||||||||||||| ||||||
Sbjct: 20165 agcttggcgaggacatcaccgaga 20142

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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 110     tcgccgtagtacttctcggc 129
               ||||||||||||||||||||
Sbjct: 1685036 tcgccgtagtacttctcggc 1685055

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>gb|AF242881.1|AF242881 Agrobacterium tumefaciens octopine-type Ti plasmid, complete sequence
          Length = 194140

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 74     agcttggcgaggacatcgccgaga 97
              ||||||||||||||||| ||||||
Sbjct: 163634 agcttggcgaggacatcaccgaga 163611

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>gb|AF223391.1|AF239258S3 Homo sapiens calcium channel alpha1E subunit (CACNA1E) gene, exons 7-49,
              and partial cds, alternatively spliced
          Length = 316704

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 7      ttccaaatatgaacaaaacataaa 30
              ||||||||||||||||||| ||||
Sbjct: 241588 ttccaaatatgaacaaaacttaaa 241611

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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 79      ggcgaggacatcgccgagaa 98
               ||||||||||||||||||||
Sbjct: 1695163 ggcgaggacatcgccgagaa 1695182

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>gb|AC153974.9| Mus musculus 10 BAC RP24-462I5 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 162977

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     ggccattatgtggatccat 66
              |||||||||||||||||||
Sbjct: 132339 ggccattatgtggatccat 132321

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>gb|AC140680.4| Mus musculus BAC clone RP24-548A12 from chromosome Y, complete sequence
          Length = 222176

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     caaaacataaaaggcctga 38
              |||||||||||||||||||
Sbjct: 211506 caaaacataaaaggcctga 211488

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>ref|XM_954053.1| Neurospora crassa OR74A hypothetical protein (NCU09202.1) partial
           mRNA
          Length = 1737

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  gaggacatcgccgagaaca 100
           |||||||||||||||||||
Sbjct: 232 gaggacatcgccgagaaca 250

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>ref|XM_331593.1| Neurospora crassa OR74A hypothetical protein (NCU09202.1) partial
           mRNA
          Length = 1737

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  gaggacatcgccgagaaca 100
           |||||||||||||||||||
Sbjct: 232 gaggacatcgccgagaaca 250

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>gb|AC141875.4| Mus musculus BAC clone RP24-316O22 from chromosome Y, complete sequence
          Length = 170988

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     caaaacataaaaggcctga 38
              |||||||||||||||||||
Sbjct: 149381 caaaacataaaaggcctga 149363

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>gb|AC140678.2| Mus musculus BAC clone RP24-553I16 from chromosome Y, complete sequence
          Length = 161612

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     caaaacataaaaggcctga 38
              |||||||||||||||||||
Sbjct: 123552 caaaacataaaaggcctga 123534

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>gb|AC129192.4| Mus musculus BAC clone RP24-113B19 from chromosome 5, complete sequence
          Length = 170410

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 11     aaatatgaacaaaacataaaagg 33
              ||||||||||| |||||||||||
Sbjct: 146255 aaatatgaacagaacataaaagg 146233

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>gb|AC122295.4| Mus musculus BAC clone RP23-263E3 from 13, complete sequence
          Length = 200289

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 15     atgaacaaaacataaaagg 33
              |||||||||||||||||||
Sbjct: 181814 atgaacaaaacataaaagg 181832

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>gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, complete sequence
          Length = 228614

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    caaatatgaacaaaacata 28
             |||||||||||||||||||
Sbjct: 65810 caaatatgaacaaaacata 65792

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>gb|AC124521.2| Mus musculus BAC clone RP23-395M9 from 5, complete sequence
          Length = 184380

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 11    aaatatgaacaaaacataaaagg 33
             ||||||||| |||||||||||||
Sbjct: 17834 aaatatgaataaaacataaaagg 17812

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>gb|AC110259.17| Mus musculus chromosome 5, clone RP23-287A8, complete sequence
          Length = 230585

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 11    aaatatgaacaaaacataaaagg 33
             ||||||||| |||||||||||||
Sbjct: 36778 aaatatgaataaaacataaaagg 36800

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>gb|AC146704.8| Medicago truncatula clone mth2-107f11, complete sequence
          Length = 116591

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 15    atgaacaaaacataaaagg 33
             |||||||||||||||||||
Sbjct: 73039 atgaacaaaacataaaagg 73057

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>gb|AC137971.4| Mus musculus, clone RP23-135B1, complete sequence
          Length = 224801

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 11     aaatatgaacaaaacataaaagg 33
              ||||||||||| |||||||||||
Sbjct: 176516 aaatatgaacagaacataaaagg 176494

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>emb|BX295539.1|NCB1D14 Neurospora crassa genomic DNA, BAC contig B1D14
          Length = 138898

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    gaggacatcgccgagaaca 100
             |||||||||||||||||||
Sbjct: 57790 gaggacatcgccgagaaca 57808

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>emb|AL096788.1|SPBC582 S.pombe chromosome II cosmid c582
          Length = 27999

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   aacataaaaggcctgaaag 41
            |||||||||||||||||||
Sbjct: 8690 aacataaaaggcctgaaag 8708

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>emb|BX511195.5| Zebrafish DNA sequence from clone DKEYP-57D12 in linkage group 17,
             complete sequence
          Length = 79527

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    caaatatgaacaaaacata 28
             |||||||||||||||||||
Sbjct: 76706 caaatatgaacaaaacata 76688

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>gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 217249

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     ggccattatgtggatccat 66
              |||||||||||||||||||
Sbjct: 171607 ggccattatgtggatccat 171625

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>gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, complete sequence
          Length = 91296

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    atatgaacaaaacataaaa 31
             |||||||||||||||||||
Sbjct: 23999 atatgaacaaaacataaaa 24017

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>gb|AC083813.29| Homo sapiens 12q BAC RP11-304C10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 216123

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     aaacataaaaggcctgaaa 40
              |||||||||||||||||||
Sbjct: 155085 aaacataaaaggcctgaaa 155067

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>gb|AC091894.2| Homo sapiens chromosome 5 clone RP11-138J23, complete sequence
          Length = 175552

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 13    atatgaacaaaacataaaa 31
             |||||||||||||||||||
Sbjct: 15810 atatgaacaaaacataaaa 15792

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>emb|BX664616.16| Zebrafish DNA sequence from clone DKEY-231P15 in linkage group 8,
             complete sequence
          Length = 193090

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    caaatatgaacaaaacata 28
             |||||||||||||||||||
Sbjct: 31469 caaatatgaacaaaacata 31487

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>gb|AC147620.5| Mus musculus BAC clone RP24-285H21 from chromosome 13, complete sequence
          Length = 172051

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     atgaacaaaacataaaagg 33
              |||||||||||||||||||
Sbjct: 129186 atgaacaaaacataaaagg 129168

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>emb|BX005102.6| Zebrafish DNA sequence from clone CH211-105H13 in linkage group 8,
              complete sequence
          Length = 154770

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     caaatatgaacaaaacata 28
              |||||||||||||||||||
Sbjct: 104208 caaatatgaacaaaacata 104190

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>ref|NM_001021080.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC582.04c),
           partial mRNA
          Length = 1806

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 23  aacataaaaggcctgaaag 41
           |||||||||||||||||||
Sbjct: 597 aacataaaaggcctgaaag 579

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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 114     cgtagtacttctcggcctc 132
               |||||||||||||||||||
Sbjct: 1142282 cgtagtacttctcggcctc 1142264

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>gb|AC016748.3| Homo sapiens BAC clone RP11-494M7 from 2, complete sequence
          Length = 182776

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    aaacataaaaggcctgaaa 40
             |||||||||||||||||||
Sbjct: 76812 aaacataaaaggcctgaaa 76794

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>gb|AC022075.29| Homo sapiens 12 BAC RP11-277P12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 168351

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    aaaacataaaaggcctgaa 39
             |||||||||||||||||||
Sbjct: 93119 aaaacataaaaggcctgaa 93137

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>gb|AC114493.3| Homo sapiens chromosome 1 clone RP11-336O20, complete sequence
          Length = 179221

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 7     ttccaaatatgaacaaaac 25
             |||||||||||||||||||
Sbjct: 45183 ttccaaatatgaacaaaac 45201

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>gb|AC005157.1|AC005157 Homo sapiens PAC clone RP5-1108A12 from 14q24.3, complete sequence
          Length = 164275

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 28  aaaaggcctgaaagcaaca 46
           |||||||||||||||||||
Sbjct: 291 aaaaggcctgaaagcaaca 309

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>emb|CR956631.17| M.truncatula DNA sequence from clone MTH2-65L9 on chromosome 3, complete
              sequence
          Length = 126227

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 14     tatgaacaaaacataaaag 32
              |||||||||||||||||||
Sbjct: 120363 tatgaacaaaacataaaag 120381

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>dbj|AB088351.1| Gibberella zeae glu, rga genes for putative beta-1,3-glucosidase,
           putative rhamnogalacturonan acetyltransferase, complete
           cds
          Length = 3411

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 111 cgccgtagtacttctcggcctcggtgg 137
           ||||| ||||||||||| |||||||||
Sbjct: 153 cgccgaagtacttctcgacctcggtgg 179

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>dbj|AP000872.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-727A20, complete
             sequences
          Length = 157330

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 6     cttccaaatatgaacaaaacata 28
             ||||||||||||||||| |||||
Sbjct: 98374 cttccaaatatgaacaagacata 98352

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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 103     cttggtctcgccgtagtacttctcggc 129
               |||||||| |||||||||||| |||||
Sbjct: 1190113 cttggtcttgccgtagtacttgtcggc 1190139

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>dbj|AB026678.1| Gallus gallus Wpkci-8 gene, complete cds
          Length = 5088

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   atatgaacaaaacataaaa 31
            |||||||||||||||||||
Sbjct: 4039 atatgaacaaaacataaaa 4057

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 79      ggcgaggacatcgccgaga 97
               |||||||||||||||||||
Sbjct: 3502352 ggcgaggacatcgccgaga 3502334

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>emb|BX000524.6| Zebrafish DNA sequence from clone DKEY-10H3, complete sequence
          Length = 188685

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aaatatgaacaaaacataa 29
             |||||||||||||||||||
Sbjct: 94775 aaatatgaacaaaacataa 94793



 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aaatatgaacaaaacataa 29
             |||||||||||||||||||
Sbjct: 23260 aaatatgaacaaaacataa 23278

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>gb|AC148329.3| Mus musculus BAC clone RP24-176F13 from Y, complete sequence
          Length = 149159

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    caaaacataaaaggcctga 38
             |||||||||||||||||||
Sbjct: 25189 caaaacataaaaggcctga 25171

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>gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, complete sequence
          Length = 194385

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    caaatatgaacaaaacata 28
             |||||||||||||||||||
Sbjct: 92861 caaatatgaacaaaacata 92879

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>dbj|AP006372.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT36C05, TM0215b,
             complete sequence
          Length = 84914

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    aacaaaacataaaaggcct 36
             |||||||||||||||||||
Sbjct: 66465 aacaaaacataaaaggcct 66483

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>dbj|AB026679.1| Gallus gallus Wpkci-7 and Wpkci genes, partial cds
          Length = 5635

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 13   atatgaacaaaacataaaa 31
            |||||||||||||||||||
Sbjct: 2543 atatgaacaaaacataaaa 2561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,083,896
Number of Sequences: 3902068
Number of extensions: 1083896
Number of successful extensions: 85468
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85128
Number of HSP's gapped (non-prelim): 340
length of query: 141
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 120
effective length of database: 17,151,101,840
effective search space: 2058132220800
effective search space used: 2058132220800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result