>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
 Frame = -3

Query: 591 PWGRGGQEPSSAGSHFPG--------QFQGLPGQMAQG---IGGIQTGRPEAPLTADMEK 445
           P G  G  P + G+  P         Q  GL G   QG    GG   G+ +       + 
Sbjct: 479 PSGMQGPSPINMGAVVPQGSRQVPVMQGTGLQGASIQGGSQPGGFSPGQNQVTPQDHEKA 538

Query: 444 MLVQQVMSMSPEQINVLPPEQRQQVLQLREMLRQ 343
            L+ QV+ ++ +QI +LPPEQRQ +L L+E +++
Sbjct: 539 ALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 572

>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
 Frame = -3

Query: 591 PWGRGGQEPSSAGSHFPG--------QFQGLPGQMAQG---IGGIQTGRPEAPLTADMEK 445
           P G  G  P + G+  P         Q  G+ G   QG    GG   G+ +       + 
Sbjct: 479 PSGMQGPSPINMGAVVPQGSRQVPVMQGTGMQGASIQGGSQPGGFSPGQNQVTPQDHEKA 538

Query: 444 MLVQQVMSMSPEQINVLPPEQRQQVLQLREMLRQ 343
            L+ QV+ ++ +QI +LPPEQRQ +L L+E +++
Sbjct: 539 ALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 572

>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
 Frame = -3

Query: 591 PWGRGGQEPSSAGSHFPG--------QFQGLPGQMAQG---IGGIQTGRPEAPLTADMEK 445
           P G  G  P + G+  P         Q  G+ G   QG    GG   G+ +       + 
Sbjct: 482 PSGIQGPNPMNMGAVVPQGSRQVPVMQGAGMQGASMQGGSQPGGFSPGQSQVTPQDHEKA 541

Query: 444 MLVQQVMSMSPEQINVLPPEQRQQVLQLREMLRQ 343
            L+ QV+ ++ +QI +LPPEQRQ +L L+E +++
Sbjct: 542 ALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 575

>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = -3

Query: 570 EPSSAGSHFPGQFQGLPGQ--MAQGIGGIQTGRPEAPLTADMEKMLVQQVMSMSPEQINV 397
           +P+SA S  P   Q +P     +Q   G   G     +       L+QQ+++++PEQIN 
Sbjct: 291 QPASATSSPPSVPQKIPSSNHKSQQANGSDQGNEGKRMA------LIQQLLALTPEQINA 344

Query: 396 LPPEQRQQVLQLR 358
           LPP QR Q+L +R
Sbjct: 345 LPPAQRDQILSIR 357

>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
 Frame = -3

Query: 591 PWGRGGQEPSSAGSHFPG--------QFQGLPGQMAQG---IGGIQTGRPEAPLTADMEK 445
           P G  G  P + G+  P         Q  G+ G   QG    GG   G+ +       + 
Sbjct: 474 PSGIQGPSPINMGAVGPQGSRQVPVMQGAGMQGASIQGGGQPGGFSPGQNQVTPQDHEKA 533

Query: 444 MLVQQVMSMSPEQINVLPPEQRQQVLQLREMLRQ 343
            L+ QV+ ++ +QI +LPPEQRQ +L L+E +++
Sbjct: 534 ALIMQVLQLTADQIAMLPPEQRQSILILKEQIQK 567

>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
 Frame = -3

Query: 576 GQEPSSAGSHFPGQFQGLPGQMAQGIGGIQT-----GRPEAPLTADMEKMLVQQVMSMSP 412
           G +    G+   G  QG   Q A   GG Q      G+ +       +  L+ QV+ ++ 
Sbjct: 545 GMQAGMQGASMQGGMQGAGMQGASKQGGGQPSSFSPGQSQVTPQDQEKAALIMQVLQLTA 604

Query: 411 EQINVLPPEQRQQVLQLREMLRQ 343
           +QI +LPPEQRQ +L L+E +++
Sbjct: 605 DQIAMLPPEQRQSILILKEQIQK 627

>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = -3

Query: 582 RGGQEPSSAGSHFPGQFQGLPGQMAQGIGGIQTGRPEAPLTADMEKM-LVQQVMSMSPEQ 406
           +GG +PSS     PGQ Q  P                     D EK  L+ QV+ ++ +Q
Sbjct: 554 QGGSQPSSFS---PGQSQVTP--------------------QDQEKAALIMQVLQLTADQ 590

Query: 405 INVLPPEQRQQVLQLREMLRQ 343
           I +LPPEQRQ +L L+E +++
Sbjct: 591 IAMLPPEQRQSILILKEQIQK 611

>HNF3B_HUMAN (Q9Y261) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 457

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 642 HVSSHYNSQSMQVDRSAPWGRGGQEPSSAGSHFPGQFQGLPGQMAQGIGGIQTGRPEAPL 463
           H  SH++ Q  ++D  A              H+PG    +PG +A G    +TG   +PL
Sbjct: 388 HHHSHHHHQPHKMDLKA---------YEQVMHYPGYGSPMPGSLAMGPVTNKTGLDASPL 438

Query: 462 TAD 454
            AD
Sbjct: 439 AAD 441

>JIP1_HUMAN (Q9UQF2) C-jun-amino-terminal kinase-interacting protein 1|
           (JNK-interacting protein 1) (JIP-1) (JNK MAP kinase
           scaffold protein 1) (Islet-brain 1) (IB-1)
           (Mitogen-activated protein kinase 8-interacting protein
           1)
          Length = 711

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -3

Query: 591 PWGRGGQEPSSAGSHFPGQFQGLPGQMAQGIGGIQTGRPEAPLTADM 451
           P    GQEP+S G    GQ QG     +QG G   T RP+ P T ++
Sbjct: 127 PKAESGQEPASRGQ---GQSQG----QSQGPGSGDTYRPKRPTTLNL 166

>ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8)
          Length = 765

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 553 LPFPWAIPRSTWTDGPRDWR-HPDGPPRST 467
           LP P   P  T   GP+  R HP GPPR+T
Sbjct: 673 LPSPPGTPHLTILRGPQSCRLHPHGPPRAT 702

>TMM28_HUMAN (O75949) Transmembrane protein 28 (TED protein)|
          Length = 473

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 80 WLSDDK*SGVFVLCCCCCHW 21
          W+   K +    +CCCCC W
Sbjct: 6  WMWPGKDAAALTICCCCCCW 25

>KREM1_MOUSE (Q99N43) Kremen protein 1 precursor (Kringle-containing protein|
           marking the eye and the nose) (Kringle domain-containing
           transmembrane protein 1) (Dickkopf receptor)
          Length = 473

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 359 EKCCASDVRDEQLPE*KNQFDRAAWISRVLHARLTPSP*HPPVLATVQADWHP 201
           E+   +    E + E  N    AA  S+VL+  +TPSP HPP  A     W P
Sbjct: 328 ERPAVNQTLAEVITEQANLSVSAAHSSKVLYV-ITPSPSHPPQTAPGSHSWAP 379

>CBPA_DICDI (P35085) Calcium-binding protein|
          Length = 467

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 491 MPPIPWAICPGRPWNCPGKWEPADDGS*PPRPHGA 595
           +PP P    PG P   PG++ P   G  PP+  GA
Sbjct: 58  LPPYPGTQQPGAP-GAPGQYPPQQPGQYPPQQPGA 91

>PPCKC_BOVIN (Q8HYZ4) Phosphoenolpyruvate carboxykinase, cytosolic [GTP] (EC|
           4.1.1.32) (Phosphoenolpyruvate carboxylase) (PEPCK-C)
          Length = 622

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 438 VQQVMSMSPEQINV-LPPEQRQQVLQLREMLRQ 343
           V+++     EQ+NV LPPE + QVL L++ + Q
Sbjct: 589 VEEIQKYLEEQVNVDLPPEIKNQVLALKQRISQ 621

>ANTP_DROSU (Q24645) Homeotic protein antennapedia|
          Length = 394

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = -3

Query: 630 HYNSQSMQVDRSAPWGRGGQEPSSAGSHFPGQFQGLPGQMAQG-IGGIQTGRPEAPLTAD 454
           +YN Q M  D+     +G   P S  S        + G M Q    G+ TG     L A 
Sbjct: 68  YYNGQGM--DQQQQQHQGYSRPDSPSSQ-------VGGVMPQAQTNGLPTG---GQLVAQ 115

Query: 453 MEKMLVQQVMSMSPEQINVLPPEQRQQVLQ 364
            ++   QQ  S +P+Q     P+Q+QQ LQ
Sbjct: 116 QQQQQPQQ-QSQTPQQQQAQQPQQQQQQLQ 144

>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4 (Hyperpolarization-activated
            cation channel 4) (HAC-4)
          Length = 1175

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -3

Query: 594  APWGRGGQE-----PSSAGSHFPGQFQGLPGQMAQGIGGIQTGRPEAP 466
            AP G G  E     P+ + +  PGQ    PG+++ G+G    G PE P
Sbjct: 931  APAGLGLLEHFLPPPARSPTSSPGQLGQPPGELSPGLGSGPPGTPETP 978

>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -3

Query: 645 SHVSSHYNSQSMQVDRSAPWGRGGQE--PSSAGSHFPGQFQGLPGQMAQGIGGIQTGRPE 472
           S +S  Y+ +S  V    P G  G    P   G+  P  FQG PG+  +  G    G P 
Sbjct: 151 SQMSYGYDEKSAGVSVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGGSGPMGPPG 210

Query: 471 AP 466
            P
Sbjct: 211 PP 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,640,222
Number of Sequences: 219361
Number of extensions: 2099054
Number of successful extensions: 6318
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6284
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)