ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3b16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234677.1|HVU234677 Hordeum vulgare genomic DNA fragment; c... 509 e-141
2emb|AJ234678.1|HVU234678 Hordeum vulgare genomic DNA fragment; c... 137 4e-29
3gb|AY644645.1| Oryza sativa (indica cultivar-group) putative nuc... 92 2e-15
4ref|XM_480492.1| Oryza sativa (japonica cultivar-group), mRNA 84 6e-13
5dbj|AK103422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 6e-13
6dbj|AK059471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 6e-13
7ref|XM_473923.1| Oryza sativa (japonica cultivar-group), predic... 70 8e-09
8dbj|AK103446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 8e-09
9dbj|AK063918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 8e-09
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
11dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
12emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, stra... 50 0.008
13emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4,... 50 0.008
14dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
15ref|XM_748256.1| Aspergillus fumigatus Af293 hypothetical protei... 44 0.48
16emb|AJ344214.2|YEN344214 Yersinia enterocolitica (type 0:8) yts1... 44 0.48
17emb|AL824703.12| Mouse DNA sequence from clone RP23-317M2 on chr... 44 0.48
18gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, c... 42 1.9
19gb|AC069559.27| Mus musculus strain C57BL/6J clone rp23-136j2 ma... 42 1.9
20gb|AC160125.2| Mus musculus BAC clone RP23-317M11 from chromosom... 42 1.9
21gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 1.9
22emb|AL606660.3|OSJN00111 Oryza sativa genomic DNA, chromosome 4,... 42 1.9
23gb|AC009385.8| Drosophila melanogaster 3L BAC RP98-23M20 (Roswel... 42 1.9
24gb|AC009380.6| Drosophila melanogaster 3L BAC RP98-17L5 (Roswell... 42 1.9
25dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 42 1.9
26ref|NM_140792.1| Drosophila melanogaster MYPT-75D CG6896-RA (MYP... 42 1.9
27gb|AY075426.1| Drosophila melanogaster LD46604 full length cDNA 42 1.9
28gb|BT024069.1| Zea mays clone EL01N0450D06 mRNA sequence 42 1.9
29gb|AE003519.3| Drosophila melanogaster chromosome 3L, section 66... 42 1.9
30gb|AC159965.5| Mus musculus chromosome 15, clone RP23-471C16, co... 42 1.9
31emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chr... 42 1.9
32emb|AL732449.5| Mouse DNA sequence from clone RP23-191F11 on chr... 42 1.9
33gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, com... 40 7.5
34gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 7.5
35gb|AC091295.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 7.5
36gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, com... 40 7.5
37gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome... 40 7.5
38gb|AC158625.9| Mus musculus 6 BAC RP23-78J15 (Roswell Park Cance... 40 7.5
39gb|AC183602.2| Pan troglodytes BAC clone CH251-350L8 from chromo... 40 7.5
40gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, com... 40 7.5
41ref|XM_499995.1| Yarrowia lipolytica CLIB122, YALI0A11869g predi... 40 7.5
42gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, com... 40 7.5
43gb|AC183605.3| Pan troglodytes BAC clone CH251-334E18 from chrom... 40 7.5
44emb|CR859732.1| Pongo pygmaeus mRNA; cDNA DKFZp468I108 (from clo... 40 7.5
45emb|CR450730.4| Zebrafish DNA sequence from clone DKEY-43P5 in l... 40 7.5
46gb|AC104508.4| Drosophila melanogaster 3L BAC RP98-1O19 (Roswell... 40 7.5
47gb|AC091208.4| Drosophila melanogaster 3L BAC RP98-46N3 (Roswell... 40 7.5
48gb|AC087115.10| Mus Musculus Strain C57Bl6/J Chromosome 8 RP23-9... 40 7.5
49gb|AC098860.2| Homo sapiens BAC clone RP11-229G4 from 4, complet... 40 7.5
50gb|AC144670.1| Homo sapiens chromosome 8, clone XXfos-85539D6, c... 40 7.5
51emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chr... 40 7.5
52ref|XM_626264.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 7.5
53emb|CR382285.2| Human DNA sequence from clone bP-21201H5 on chro... 40 7.5
54gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome... 40 7.5
55dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
56dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
57dbj|AP006545.1| Homo sapiens genomic DNA, chromosome 8p11.21, cl... 40 7.5
58gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21... 40 7.5
59emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chr... 40 7.5
60gb|AC152923.2| Mus musculus BAC clone RP24-267O6 from 5, complet... 40 7.5
61emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 7.5
62emb|AL844871.11| Mouse DNA sequence from clone RP23-271B15 on ch... 40 7.5
63emb|AL845478.6| Mouse DNA sequence from clone RP23-186J18 on chr... 40 7.5
64emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chr... 40 7.5
65dbj|AB022785.1| Homo sapiens ASH2L gene, complete cds, similar t... 40 7.5
66dbj|AB020982.1| Homo sapiens ASH2L mRNA, complete cds, similar t... 40 7.5
67dbj|AP000065.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 40 7.5 
>emb|AJ234677.1|HVU234677 Hordeum vulgare genomic DNA fragment; clone MWG0957.uni
          Length = 345

 Score =  509 bits (257), Expect = e-141
 Identities = 263/266 (98%)
 Strand = Plus / Minus

                                                                       
Query: 290 ttctttcctgcgctagctgtaccagcactctgcctgctctgatagcctcggccacctcct 349
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttcttacctgcgctagctgtaccagcactctgcctgctctgatagcctcggccacctcct 280

                                                                       
Query: 350 ctaccaccatctcggccaccagatcggccaaacctgccaccgccatcacggccacctgac 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctaccaccatctcggccaccagatcggccaaacctgccaccgccatcacggccacctgac 220

                                                                       
Query: 410 cggccaaacctgccgccgccatcacgaccaccagatcggccgaacctgccaccgccagaa 469
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 219 cggccaaacctgccgccgccatcacgaccaccagatcggscgaacctgccaccgccagaa 160

                                                                       
Query: 470 cggccaccatccctaccaccagatcgaccacccccaccaccaaattgacccttangctta 529
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 159 cggccaccatccctaccaccagatcgaccacccccaccaccaaattgacccttaggctta 100

                                     
Query: 530 gcttcagcaacatacaagttgcagcc 555
           ||||||||||||||||||||||||||
Sbjct: 99  gcttcagcaacatacaagttgcagcc 74
to top
>emb|AJ234678.1|HVU234678 Hordeum vulgare genomic DNA fragment; clone MWG0957.rev
          Length = 411

 Score =  137 bits (69), Expect = 4e-29
 Identities = 69/69 (100%)
 Strand = Plus / Plus

                                                                       
Query: 9   gggaaataattgttttcagacgactacagcatacacttctacttttggatacttggatgg 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggaaataattgttttcagacgactacagcatacacttctacttttggatacttggatgg 381

                    
Query: 69  agaagtagc 77
           |||||||||
Sbjct: 382 agaagtagc 390
to top
>gb|AY644645.1| Oryza sativa (indica cultivar-group) putative nucleolin (NUC) mRNA,
            complete cds
          Length = 2039

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 84/96 (87%), Gaps = 3/96 (3%)
 Strand = Plus / Minus

                                                                        
Query: 278  ccaaatgttgtcttctttcctgcgctagctgtaccagcactctgcctgctctgata---g 334
            ||||| ||||||||||||||||  |||||||||||||||||||||||||||||| |   |
Sbjct: 1726 ccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctgctctgaaaaccg 1667

                                                
Query: 335  cctcggccacctcctctaccaccatctcggccacca 370
            ||||| || |||| ||| |||||||||| |||||||
Sbjct: 1666 cctcgtccgcctcttctgccaccatctctgccacca 1631
to top
>ref|XM_480492.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2090

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 278  ccaaatgttgtcttctttcctgcgctagctgtaccagcactctgcctgctctga 331
            ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 1813 ccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctgctctga 1760
to top
>dbj|AK103422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128K11, full
            insert sequence
          Length = 2089

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 278  ccaaatgttgtcttctttcctgcgctagctgtaccagcactctgcctgctctga 331
            ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 1812 ccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctgctctga 1759
to top
>dbj|AK059471.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-E02, full
           insert sequence
          Length = 1160

 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                 
Query: 278 ccaaatgttgtcttctttcctgcgctagctgtaccagcactctgcctgctctga 331
           ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 943 ccaaaagttgtcttctttcctgtactagctgtaccagcactctgcctgctctga 890
to top
>ref|XM_473923.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2124

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 272  tcgtcaccaaatgttgtcttctttcctgcgctagctgtaccagcactctgc 322
            |||||||| |||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 2117 tcgtcaccgaatgttgtcttctttcctgcactaggtgtaccagcgctctgc 2067
to top
>dbj|AK103446.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129G11, full
            insert sequence
          Length = 2447

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 272  tcgtcaccaaatgttgtcttctttcctgcgctagctgtaccagcactctgc 322
            |||||||| |||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 2259 tcgtcaccgaatgttgtcttctttcctgcactaggtgtaccagcgctctgc 2209
to top
>dbj|AK063918.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B06, full
            insert sequence
          Length = 1943

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 272  tcgtcaccaaatgttgtcttctttcctgcgctagctgtaccagcactctgc 322
            |||||||| |||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 1704 tcgtcaccgaatgttgtcttctttcctgcactaggtgtaccagcgctctgc 1654
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                             
Query: 302     ctagctgtaccagcactctgcctgctctga 331
               ||||||||||||||||||||||||||||||
Sbjct: 5416338 ctagctgtaccagcactctgcctgctctga 5416367
to top
>dbj|AP005441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056O06
          Length = 151038

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                           
Query: 302   ctagctgtaccagcactctgcctgctctga 331
             ||||||||||||||||||||||||||||||
Sbjct: 86149 ctagctgtaccagcactctgcctgctctga 86178
to top
>emb|BX842653.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 8/11
          Length = 347636

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 379   aaacctgccaccgccatcacggcca 403
             |||||||||||||||||||||||||
Sbjct: 17695 aaacctgccaccgccatcacggcca 17671
to top
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
              complete sequence
          Length = 164805

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 272    tcgtcaccaaatgttgtcttctttcctgc 300
              |||||||| ||||||||||||||||||||
Sbjct: 162573 tcgtcaccgaatgttgtcttctttcctgc 162545
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 272      tcgtcaccaaatgttgtcttctttcctgc 300
                |||||||| ||||||||||||||||||||
Sbjct: 31584890 tcgtcaccgaatgttgtcttctttcctgc 31584862



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 272      tcgtcaccaaatgttgtcttctttcctgc 300
                |||||||| ||||| ||||||||||||||
Sbjct: 31593989 tcgtcaccgaatgtcgtcttctttcctgc 31593961
to top
>ref|XM_748256.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g13050)
           partial mRNA
          Length = 2334

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 349 tctaccaccatctcggccacca 370
           ||||||||||||||||||||||
Sbjct: 386 tctaccaccatctcggccacca 407
to top
>emb|AJ344214.2|YEN344214 Yersinia enterocolitica (type 0:8) yts1S gene, yts1C gene, yts1D gene,
             yts1E gene, yts1F gene, yts1G gene, yts1H gene, yts1I
             gene, yts1J gene, yts1K gene, yts1L gene, yts1M gene,
             yts1O gene and chiY gene
          Length = 16996

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 374   cggccaaacctgccaccgccatcacggcca 403
             ||||||||||||||||||||| ||| ||||
Sbjct: 10225 cggccaaacctgccaccgccagcaccgcca 10196
to top
>emb|AL824703.12| Mouse DNA sequence from clone RP23-317M2 on chromosome 4, complete
             sequence
          Length = 80922

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 341   ccacctcctctaccaccatctc 362
             ||||||||||||||||||||||
Sbjct: 53503 ccacctcctctaccaccatctc 53524
to top
>gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, complete sequence
          Length = 217334

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 279    caaatgttgtcttctttcctg 299
              |||||||||||||||||||||
Sbjct: 211136 caaatgttgtcttctttcctg 211116
to top
>gb|AC069559.27| Mus musculus strain C57BL/6J clone rp23-136j2 map 9, complete sequence
          Length = 185365

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 279   caaatgttgtcttctttcctg 299
             |||||||||||||||||||||
Sbjct: 79351 caaatgttgtcttctttcctg 79371
to top
>gb|AC160125.2| Mus musculus BAC clone RP23-317M11 from chromosome 9, complete sequence
          Length = 209835

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 279    caaatgttgtcttctttcctg 299
              |||||||||||||||||||||
Sbjct: 148680 caaatgttgtcttctttcctg 148660
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 458    ccaccgccagaacggccacca 478
              |||||||||||||||||||||
Sbjct: 631902 ccaccgccagaacggccacca 631922
to top
>emb|AL606660.3|OSJN00111 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085C12,
            complete sequence
          Length = 122721

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 272  tcgtcaccaaatgttgtcttctttcctgc 300
            |||||||| ||||| ||||||||||||||
Sbjct: 8806 tcgtcaccgaatgtcgtcttctttcctgc 8778
to top
>gb|AC009385.8| Drosophila melanogaster 3L BAC RP98-23M20 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 178628

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 357    catctcggccaccagatcggc 377
              |||||||||||||||||||||
Sbjct: 131972 catctcggccaccagatcggc 131952
to top
>gb|AC009380.6| Drosophila melanogaster 3L BAC RP98-17L5 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187973

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 357   catctcggccaccagatcggc 377
             |||||||||||||||||||||
Sbjct: 76303 catctcggccaccagatcggc 76283
to top
>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
          Length = 1913118

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 152     acaagaaaataccaagacaaa 172
               |||||||||||||||||||||
Sbjct: 1563702 acaagaaaataccaagacaaa 1563722
to top
>ref|NM_140792.1| Drosophila melanogaster MYPT-75D CG6896-RA (MYPT-75D), mRNA
          Length = 3973

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 357 catctcggccaccagatcggc 377
           |||||||||||||||||||||
Sbjct: 920 catctcggccaccagatcggc 900
to top
>gb|AY075426.1| Drosophila melanogaster LD46604 full length cDNA
          Length = 3975

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 357 catctcggccaccagatcggc 377
           |||||||||||||||||||||
Sbjct: 901 catctcggccaccagatcggc 881
to top
>gb|BT024069.1| Zea mays clone EL01N0450D06 mRNA sequence
          Length = 2497

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 275  tcaccaaatgttgtcttctttcctgcgctagctgtaccagc 315
            |||||||| || |||||||||||||  |||||||| |||||
Sbjct: 2348 tcaccaaaggtggtcttctttcctgtactagctgtcccagc 2308
to top
>gb|AE003519.3| Drosophila melanogaster chromosome 3L, section 66 of 83 of the complete
             sequence
          Length = 294542

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 357   catctcggccaccagatcggc 377
             |||||||||||||||||||||
Sbjct: 36133 catctcggccaccagatcggc 36113
to top
>gb|AC159965.5| Mus musculus chromosome 15, clone RP23-471C16, complete sequence
          Length = 173156

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 279    caaatgttgtcttctttcctg 299
              |||||||||||||||||||||
Sbjct: 153118 caaatgttgtcttctttcctg 153138
to top
>emb|AL929037.3| Mouse DNA sequence from clone RP23-297K24 on chromosome 2, complete
              sequence
          Length = 156705

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 251    tgtggctcaaacagtttctaa 271
              |||||||||||||||||||||
Sbjct: 147855 tgtggctcaaacagtttctaa 147835
to top
>emb|AL732449.5| Mouse DNA sequence from clone RP23-191F11 on chromosome X, complete
             sequence
          Length = 160779

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 279   caaatgttgtcttctttcctg 299
             |||||||||||||||||||||
Sbjct: 28749 caaatgttgtcttctttcctg 28729
to top
>gb|AC121514.14| Mus musculus chromosome 8, clone RP24-394H9, complete sequence
          Length = 168316

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 419    ctgccgccgccatcacgaccacca 442
              |||||||||||||||| |||||||
Sbjct: 137364 ctgccgccgccatcaccaccacca 137387
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 358     atctcggccaccagatcggc 377
               ||||||||||||||||||||
Sbjct: 3286600 atctcggccaccagatcggc 3286581
to top
>gb|AC091295.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-360N5, complete
             sequence
          Length = 111108

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   aaatgttgtcttctttcctg 299
             ||||||||||||||||||||
Sbjct: 36723 aaatgttgtcttctttcctg 36742
to top
>gb|AC158936.4| Mus musculus chromosome 3, clone RP23-235P13, complete sequence
          Length = 160709

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    aaatgttgtcttctttcctg 299
              ||||||||||||||||||||
Sbjct: 145510 aaatgttgtcttctttcctg 145529
to top
>gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome 3, complete
            sequence
          Length = 190178

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 280  aaatgttgtcttctttcctg 299
            ||||||||||||||||||||
Sbjct: 2418 aaatgttgtcttctttcctg 2437
to top
>gb|AC158625.9| Mus musculus 6 BAC RP23-78J15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 246705

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    caaatgttgtcttctttcct 298
              ||||||||||||||||||||
Sbjct: 155457 caaatgttgtcttctttcct 155438
to top
>gb|AC183602.2| Pan troglodytes BAC clone CH251-350L8 from chromosome 9, complete
             sequence
          Length = 165959

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 110   aaatgagctaacatatataatagt 133
             ||||||| ||||||||||||||||
Sbjct: 46331 aaatgagataacatatataatagt 46308
to top
>gb|AC104884.10| Mus musculus chromosome 3, clone RP24-281E9, complete sequence
          Length = 168622

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   aaatgttgtcttctttcctg 299
             ||||||||||||||||||||
Sbjct: 35762 aaatgttgtcttctttcctg 35743
to top
>ref|XM_499995.1| Yarrowia lipolytica CLIB122, YALI0A11869g predicted mRNA
          Length = 4290

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 335  cctcggccacctcctctacc 354
            ||||||||||||||||||||
Sbjct: 1625 cctcggccacctcctctacc 1606
to top
>gb|AC158295.5| Mus musculus chromosome 8, clone RP24-208G23, complete sequence
          Length = 167209

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 419  ctgccgccgccatcacgaccacca 442
            |||||||||||||||| |||||||
Sbjct: 3970 ctgccgccgccatcaccaccacca 3947
to top
>gb|AC183605.3| Pan troglodytes BAC clone CH251-334E18 from chromosome 4, complete
              sequence
          Length = 191017

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 110    aaatgagctaacatatataatagt 133
              ||||||| ||||||||||||||||
Sbjct: 153130 aaatgagataacatatataatagt 153153
to top
>emb|CR859732.1| Pongo pygmaeus mRNA; cDNA DKFZp468I108 (from clone DKFZp468I108)
          Length = 2768

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 418 cctgccgccgccatcacgaccacc 441
           |||||||||||||||||| |||||
Sbjct: 38  cctgccgccgccatcacggccacc 15



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 382 cctgccaccgccatcacggccacc 405
           |||||| |||||||||||||||||
Sbjct: 38  cctgccgccgccatcacggccacc 15
to top
>emb|CR450730.4| Zebrafish DNA sequence from clone DKEY-43P5 in linkage group 4,
             complete sequence
          Length = 121826

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 154   aagaaaataccaagacaaat 173
             ||||||||||||||||||||
Sbjct: 29193 aagaaaataccaagacaaat 29174
to top
>gb|AC104508.4| Drosophila melanogaster 3L BAC RP98-1O19 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 163279

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    catacaagaaaataccaaga 168
              ||||||||||||||||||||
Sbjct: 117953 catacaagaaaataccaaga 117934
to top
>gb|AC091208.4| Drosophila melanogaster 3L BAC RP98-46N3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 182705

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    catacaagaaaataccaaga 168
              ||||||||||||||||||||
Sbjct: 148604 catacaagaaaataccaaga 148585
to top
>gb|AC087115.10| Mus Musculus Strain C57Bl6/J Chromosome 8 RP23-93A22, complete sequence
          Length = 181849

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 419    ctgccgccgccatcacgaccacca 442
              |||||||||||||||| |||||||
Sbjct: 178022 ctgccgccgccatcaccaccacca 177999
to top
>gb|AC098860.2| Homo sapiens BAC clone RP11-229G4 from 4, complete sequence
          Length = 119491

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 110    aaatgagctaacatatataatagt 133
              ||||||| ||||||||||||||||
Sbjct: 115882 aaatgagataacatatataatagt 115905
to top
>gb|AC144670.1| Homo sapiens chromosome 8, clone XXfos-85539D6, complete sequence
          Length = 37413

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 382   cctgccaccgccatcacggccacc 405
             |||||| |||||||||||||||||
Sbjct: 12070 cctgccgccgccatcacggccacc 12093



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 418   cctgccgccgccatcacgaccacc 441
             |||||||||||||||||| |||||
Sbjct: 12070 cctgccgccgccatcacggccacc 12093
to top
>emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chromosome 21, complete
             sequence
          Length = 278310

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 110   aaatgagctaacatatataatagt 133
             ||||||| ||||||||||||||||
Sbjct: 16641 aaatgagataacatatataatagt 16664
to top
>ref|XM_626264.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd5_3390),
            partial mRNA
          Length = 11130

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 53   ttggatacttggatggagaa 72
            ||||||||||||||||||||
Sbjct: 1531 ttggatacttggatggagaa 1550
to top
>emb|CR382285.2| Human DNA sequence from clone bP-21201H5 on chromosome 21, complete
             sequence
          Length = 178865

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 110   aaatgagctaacatatataatagt 133
             ||||||| ||||||||||||||||
Sbjct: 30307 aaatgagataacatatataatagt 30284
to top
>gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome 5, complete sequence
          Length = 186413

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    aaatgttgtcttctttcctg 299
              ||||||||||||||||||||
Sbjct: 168356 aaatgttgtcttctttcctg 168337
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 148      acatacaagaaaataccaag 167
                ||||||||||||||||||||
Sbjct: 39625994 acatacaagaaaataccaag 39625975
to top
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0456E05
          Length = 173699

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 148    acatacaagaaaataccaag 167
              ||||||||||||||||||||
Sbjct: 106950 acatacaagaaaataccaag 106931
to top
>dbj|AP006545.1| Homo sapiens genomic DNA, chromosome 8p11.21, clone: KB1836B05, complete
              sequence
          Length = 156888

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 418    cctgccgccgccatcacgaccacc 441
              |||||||||||||||||| |||||
Sbjct: 146532 cctgccgccgccatcacggccacc 146509



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 382    cctgccaccgccatcacggccacc 405
              |||||| |||||||||||||||||
Sbjct: 146532 cctgccgccgccatcacggccacc 146509
to top
>gb|AE003564.3| Drosophila melanogaster chromosome 3L, section 21 of 83 of the complete
              sequence
          Length = 315944

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    catacaagaaaataccaaga 168
              ||||||||||||||||||||
Sbjct: 219947 catacaagaaaataccaaga 219928
to top
>emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chromosome 9, complete
            sequence
          Length = 176845

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 110  aaatgagctaacatatataatagt 133
            ||||||| ||||||||||||||||
Sbjct: 6567 aaatgagataacatatataatagt 6590
to top
>gb|AC152923.2| Mus musculus BAC clone RP24-267O6 from 5, complete sequence
          Length = 187438

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 280   aaatgttgtcttctttcctg 299
             ||||||||||||||||||||
Sbjct: 22222 aaatgttgtcttctttcctg 22203
to top
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 335     cctcggccacctcctctacc 354
               ||||||||||||||||||||
Sbjct: 1245460 cctcggccacctcctctacc 1245441
to top
>emb|AL844871.11| Mouse DNA sequence from clone RP23-271B15 on chromosome 2, complete
             sequence
          Length = 179754

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   tcttctttcctgcgctagct 307
             ||||||||||||||||||||
Sbjct: 39162 tcttctttcctgcgctagct 39143
to top
>emb|AL845478.6| Mouse DNA sequence from clone RP23-186J18 on chromosome 2, complete
              sequence
          Length = 222451

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    aaaataccaagacaaatgat 176
              ||||||||||||||||||||
Sbjct: 167557 aaaataccaagacaaatgat 167576
to top
>emb|AL772236.11| Mouse DNA sequence from clone RP23-98F14 on chromosome 4, complete
             sequence
          Length = 207430

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 315   cactctgcctgctctgatag 334
             ||||||||||||||||||||
Sbjct: 53140 cactctgcctgctctgatag 53159
to top
>dbj|AB022785.1| Homo sapiens ASH2L gene, complete cds, similar to Drosophila ash2
           gene
          Length = 34200

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 418 cctgccgccgccatcacgaccacc 441
           |||||||||||||||||| |||||
Sbjct: 106 cctgccgccgccatcacggccacc 83



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 382 cctgccaccgccatcacggccacc 405
           |||||| |||||||||||||||||
Sbjct: 106 cctgccgccgccatcacggccacc 83
to top
>dbj|AB020982.1| Homo sapiens ASH2L mRNA, complete cds, similar to Drosophila ash2
           sequence
          Length = 2368

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 418 cctgccgccgccatcacgaccacc 441
           |||||||||||||||||| |||||
Sbjct: 25  cctgccgccgccatcacggccacc 2



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 382 cctgccaccgccatcacggccacc 405
           |||||| |||||||||||||||||
Sbjct: 25  cctgccgccgccatcacggccacc 2
to top
>dbj|AP000065.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 1/19
          Length = 100000

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 382   cctgccaccgccatcacggccacc 405
             |||||| |||||||||||||||||
Sbjct: 69539 cctgccgccgccatcacggccacc 69562



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 418   cctgccgccgccatcacgaccacc 441
             |||||||||||||||||| |||||
Sbjct: 69539 cctgccgccgccatcacggccacc 69562


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,570,503
Number of Sequences: 3902068
Number of extensions: 4570503
Number of successful extensions: 97291
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96795
Number of HSP's gapped (non-prelim): 492
length of query: 555
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 532
effective length of database: 17,143,297,704
effective search space: 9120234378528
effective search space used: 9120234378528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top