ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3b13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NU2M_CHLRE (P08740) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 30 6.2
2SPDYC_HUMAN (Q5MJ68) Speedy protein C (Rapid inducer of G2/M pro... 29 8.1

>NU2M_CHLRE (P08740) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 382

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 208 HLPFLCVCYLLQATLPKEAKRLAPCYLQVVFVLEF 104
           H+ F+C C+L+  T P E +  A C L VV +  F
Sbjct: 30  HIRFICQCWLVMIT-PLEVQDFALCILTVVLLQSF 63



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>SPDYC_HUMAN (Q5MJ68) Speedy protein C (Rapid inducer of G2/M progression in|
           oocytes C) (RINGO C) (hSpy/Ringo C)
          Length = 293

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
 Frame = -2

Query: 492 RTRRRVHRSLNRSSDRVPVAQPRSGSRHRPDHSSHSLPFHSETW-----SWQCPSVT 337
           R RR  H  + R   +VPV  PR      P  S   LP H  +      S +CPS+T
Sbjct: 185 RDRRPHHGGVQRVCPQVPVRLPRGPGLSPPHCSPCGLPQHCSSHLLKPVSSKCPSLT 241


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,096,074
Number of Sequences: 219361
Number of extensions: 1733713
Number of successful extensions: 4625
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4624
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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