Clone Name | rbasd3b10 |
---|---|
Clone Library Name | barley_pub |
>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA Length = 1061 Score = 876 bits (442), Expect = 0.0 Identities = 520/542 (95%), Gaps = 3/542 (0%) Strand = Plus / Minus Query: 1 acagaacagaatcttcctggcgtgcttctttacaaggaaaagctctcctaaatgctccca 60 ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 881 acagagcagaagcttcctggcgtgcttctttacaaggaaaagctctcctaaatgctccca 822 Query: 61 ggcatattttt-gcgatacaggctacaaacacttttacat-ctataggatctgcctgcta 118 ||| ||||||| ||||||||| || |||||||||||||| ||||||||||||||||||| Sbjct: 821 ggcttattttttgcgatacagactgcaaacacttttacagactataggatctgcctgcta 762 Query: 119 ctcaaaagtaccgcggacacacatatttacagatccacaagtaccgggcatgggctcctg 178 |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 761 ctcaaa-gtaccgcggacacacatatttacagatccacaagtaccgggcatggactcctg 703 Query: 179 cgcctctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactata 238 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 702 catctctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactata 643 Query: 239 cctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatc 298 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 642 cctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcctgagcatc 583 Query: 299 agagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatc 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 582 agagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatc 523 Query: 359 acatctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacg 418 |||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||||| Sbjct: 522 acatctgcaatcttcgtctttggcccatgtgaagccctcacgtgatcgctcttgacgacg 463 Query: 419 accccgacacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagtgt 478 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 462 accccgacacatcggcgggcactgtcgacaaccgggaggcctgacacgagctggaagtgg 403 Query: 479 ccttcaacctccaccagtgcctggtccgctgtggccatcagcacgggcgtcgacatggcc 538 ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| Sbjct: 402 ccttcaacctccaccagcgcctgctccgctgtgaccatcagcacgggcgtcgacatggcc 343 Query: 539 tc 540 || Sbjct: 342 tc 341
>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 Score = 839 bits (423), Expect = 0.0 Identities = 513/539 (95%), Gaps = 3/539 (0%) Strand = Plus / Plus Query: 7 cagaatcttcctggcgtgcttctttacaaggaaaagctctcctaaatgctcccaggcata 66 ||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||| || Sbjct: 35 cagaagcttccgggcgtgcttctttacaaggaaaagctctcctaaaagttcccaggctta 94 Query: 67 tttttgcgatacaggctacaaacacttttacat-ctataggatctgcctgctactcaaaa 125 ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| Sbjct: 95 tttttgcgatacaggctacaa-cacttttacagactatag-atctgcctgctactcaaaa 152 Query: 126 gtaccgcggacacacatatttacagatccacaagtaccgggcatgggctcctgcgcctct 185 | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 153 gcaccgcggacacacatatttacagatccacaagtaccgggcatggactcctgcatctct 212 Query: 186 aaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctatta 245 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 213 aaaacttcagcatggcctccaacgcgcgaagaacgtcgtcgcgggtaactatacctatta 272 Query: 246 cttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagctg 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 cttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagctg 332 Query: 306 cggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctg 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 cggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctg 392 Query: 366 caatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacgaccccga 425 ||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||| Sbjct: 393 caatcttcgtctttggcccatgtgaagccctcgcgcaatcgctcttcacgacgaccccga 452 Query: 426 cacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagtgtccttcaa 485 | |||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct: 453 cgcatctgcgagcgctgtcgacaaccgggaggcctgacacgagctgaaagtggccttcaa 512 Query: 486 cctccaccagtgcctggtccgctgtggccatcagcacgggcgtcgacatggcctcgcgc 544 |||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct: 513 cctccaccagcgcctgctccgctgtgaccatcagcacgggcgtcgacatggcctcgcgc 571
>ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 916 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 1002 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 956 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 696 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 637 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 636 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 577 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 576 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 517 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 516 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 463
>ref|XM_468415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 833 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper susceptibility protein Hd002A mRNA, complete cds Length = 1265 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 1114 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 1055 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 1054 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 995 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 994 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 935 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 934 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 881
>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence Length = 833 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full insert sequence Length = 994 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449
>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full insert sequence Length = 916 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full insert sequence Length = 1002 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457
>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full insert sequence Length = 1514 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 683 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 624 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 623 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 564 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 563 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 504 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 503 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 450
>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence Length = 955 Score = 210 bits (106), Expect = 4e-51 Identities = 202/234 (86%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 695 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 636 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302 | ||||| ||||||| ||||| || ||||||||||||||||||||||| |||||||||| Sbjct: 635 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 576 Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362 |||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| | Sbjct: 575 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 516 Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 |||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 515 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 462
>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced resistance protein 1 (Bi1) mRNA, complete cds Length = 1098 Score = 196 bits (99), Expect = 5e-47 Identities = 202/235 (85%), Gaps = 1/235 (0%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 949 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 890 Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatc-ttcttcttgagcatcaga 301 | ||||| ||||||| ||||| || ||||||||||||||| |||||||| ||||||||| Sbjct: 889 tcacttgtctgtcctgatttacaattggtaatctgtggatccttcttctttagcatcaga 830 Query: 302 gctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcaca 361 ||||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||||||| Sbjct: 829 gctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcact 770 Query: 362 tctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416 ||||||||||||||| |||||||||| |||||||| || || || |||||||||| Sbjct: 769 tctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 715
>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence Length = 803 Score = 182 bits (92), Expect = 8e-43 Identities = 291/359 (81%) Strand = Plus / Minus Query: 184 ctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctat 243 ||||| ||||| |||| | |||||| |||||||||| ||| ||||||||||||||||||| Sbjct: 594 ctaaatcttcaacatgccttccaacacgcgaagaacatcagcgcgggtaactatacctat 535 Query: 244 tacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagc 303 ||| |||||||||||| | ||||||||||||||||||||||||||||| ||| | Sbjct: 534 tacnnnnncgtcctggtttacaactggtaatctgtggatcttcttcttgagcatgagaac 475 Query: 304 tgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatc 363 || ||||| |||| ||||| || | ||||| ||||| ||||||||||||||||| || Sbjct: 474 agcagcatccatcacggttttgtcagacgatagtgtgatagctggagatgtcatcacttc 415 Query: 364 tgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacgacccc 423 | ||||||||| | |||||||| || || || || || ||| ||||||||| ||||| Sbjct: 414 cgatatcttcgtcttggacccatgagaggctcttgcccggtcgttcttgacgatcacccc 355 Query: 424 gacacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagtgtccttc 483 ||| |||| | || |||||||||| ||||| || || |||||| || |||||| | || Sbjct: 354 gacgcatctgaggccgctgtcgacgaccggaagccccgacacggcctcgaagtggcactc 295 Query: 484 aacctccaccagtgcctggtccgctgtggccatcagcacgggcgtcgacatggcctcgc 542 || ||| |||| | |||||| |||||||||| ||||||||| || ||||||| ||||| Sbjct: 294 gacgtcctccagggtctggtctgctgtggccaccagcacgggtgtggacatggtctcgc 236
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 238 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 297 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 35111790 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 35111731 Query: 298 cagagctgcggcatc 312 ||||||||| ||||| Sbjct: 35111730 cagagctgccgcatc 35111716 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 241 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 35111977 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 35111919 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 317 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 376 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 35111621 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 35111562 Query: 377 cttgac 382 ||||| Sbjct: 35111561 tttgac 35111556
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 238 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 297 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 7146 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 7087 Query: 298 cagagctgcggcatc 312 ||||||||| ||||| Sbjct: 7086 cagagctgccgcatc 7072 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 241 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 7333 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 7275 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 317 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 376 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 6977 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 6918 Query: 377 cttgac 382 ||||| Sbjct: 6917 tttgac 6912
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 238 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 297 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 84953 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 84894 Query: 298 cagagctgcggcatc 312 ||||||||| ||||| Sbjct: 84893 cagagctgccgcatc 84879 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 241 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 85140 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 85082 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 317 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 376 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 84784 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 84725 Query: 377 cttgac 382 ||||| Sbjct: 84724 tttgac 84719
>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence Length = 4217 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 238 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 297 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 2400 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 2459 Query: 298 cagagctgcggcatc 312 ||||||||| ||||| Sbjct: 2460 cagagctgccgcatc 2474 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 241 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 2213 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 2271 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 317 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 376 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 2569 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 2628 Query: 377 cttgac 382 ||||| Sbjct: 2629 tttgac 2634
>gb|AC130222.4| Mus musculus BAC clone RP23-18K19 from chromosome 12, complete sequence Length = 218608 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 476 tgtccttcaacctccaccagtgc 498 ||||||||||||||||||||||| Sbjct: 45611 tgtccttcaacctccaccagtgc 45589
>gb|AC122227.4| Mus musculus BAC clone RP23-131H10 from chromosome 12, complete sequence Length = 208332 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 476 tgtccttcaacctccaccagtgc 498 ||||||||||||||||||||||| Sbjct: 193011 tgtccttcaacctccaccagtgc 192989
>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence Length = 168278 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 aaacacttttacatctatagga 107 |||||||||||||||||||||| Sbjct: 101167 aaacacttttacatctatagga 101188
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 catcggcgggcgctgtcgac 447 |||||||||||||||||||| Sbjct: 1917126 catcggcgggcgctgtcgac 1917145
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 489 ccaccagtgcctggtccgct 508 |||||||||||||||||||| Sbjct: 3853662 ccaccagtgcctggtccgct 3853643
>ref|XM_841417.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4760) partial mRNA Length = 3087 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 tctgtggatcttcttcttga 293 |||||||||||||||||||| Sbjct: 1378 tctgtggatcttcttcttga 1397
>gb|AC018738.4| Homo sapiens BAC clone RP11-419H23 from 2, complete sequence Length = 178530 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 tcttcttgagcatcagagct 304 |||||||||||||||||||| Sbjct: 171536 tcttcttgagcatcagagct 171517
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 517 cagcacgggcgtcgacatggcctcgcgc 544 |||||| |||| |||||||||||||||| Sbjct: 2872530 cagcactggcgacgacatggcctcgcgc 2872557
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 catcggcgggcgctgtcgac 447 |||||||||||||||||||| Sbjct: 75837 catcggcgggcgctgtcgac 75856
>gb|AC073576.23| Homo sapiens 12 BAC RP11-363M20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180309 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 gaagtgtccttcaacctcca 491 |||||||||||||||||||| Sbjct: 146928 gaagtgtccttcaacctcca 146909
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 catcggcgggcgctgtcgac 447 |||||||||||||||||||| Sbjct: 2567233 catcggcgggcgctgtcgac 2567252
>gb|AF131950.1| Human papillomavirus candHPV85, complete genome Length = 7812 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tttgcgatacaggctacaaa 88 |||||||||||||||||||| Sbjct: 3734 tttgcgatacaggctacaaa 3753
>gb|AC008750.9| Homo sapiens chromosome 19 clone CTD-2616J11, complete sequence Length = 143045 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 gctctcctaaatgctcccag 61 |||||||||||||||||||| Sbjct: 76812 gctctcctaaatgctcccag 76793
>gb|AE004451.1| Pseudomonas aeruginosa PAO1, section 12 of 529 of the complete genome Length = 10700 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 199 ggcctccaacgcgcgaagaacgtcatcg 226 ||||| ||| |||||||||||||||||| Sbjct: 2227 ggcctgcaaggcgcgaagaacgtcatcg 2200
>emb|AL355916.2|CNS05TD1 Human chromosome 14 DNA sequence BAC R-47I22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178484 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 gaagtgtccttcaacctcca 491 |||||||||||||||||||| Sbjct: 135650 gaagtgtccttcaacctcca 135631
>dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2514A21, complete sequence Length = 130977 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 acatatttacagatccacaa 158 |||||||||||||||||||| Sbjct: 119986 acatatttacagatccacaa 119967
>dbj|AP000790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736I10, complete sequence Length = 176944 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 acatatttacagatccacaa 158 |||||||||||||||||||| Sbjct: 30122 acatatttacagatccacaa 30103 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,318,264 Number of Sequences: 3902068 Number of extensions: 4318264 Number of successful extensions: 69583 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69346 Number of HSP's gapped (non-prelim): 231 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)