ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA 876 0.0
2gb|AF498268.1| Haynaldia villosa clone kong28 mRNA 839 0.0
3ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group... 210 4e-51
4ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group... 210 4e-51
5ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group... 210 4e-51
6ref|XM_468415.1| Oryza sativa (japonica cultivar-group), mRNA 210 4e-51
7gb|AY346465.1| Oryza sativa (indica cultivar-group) putative bro... 210 4e-51
8dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
9dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
10dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
11dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
12dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
13dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
14gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planth... 196 5e-47
15gb|AY112171.1| Zea mays CL11049_1 mRNA sequence 182 8e-43
16dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
17dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
18dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
19dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 1e-13
20gb|AC130222.4| Mus musculus BAC clone RP23-18K19 from chromosome... 46 0.12
21gb|AC122227.4| Mus musculus BAC clone RP23-131H10 from chromosom... 46 0.12
22gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H... 44 0.47
23gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.4
24gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 7.4
25ref|XM_841417.1| Trypanosoma brucei TREU927 hypothetical protein... 40 7.4
26gb|AC018738.4| Homo sapiens BAC clone RP11-419H23 from 2, comple... 40 7.4
27gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 7.4
28emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.4
29gb|AC073576.23| Homo sapiens 12 BAC RP11-363M20 (Roswell Park Ca... 40 7.4
30gb|CP000249.1| Frankia sp. CcI3, complete genome 40 7.4
31gb|AF131950.1| Human papillomavirus candHPV85, complete genome 40 7.4
32gb|AC008750.9| Homo sapiens chromosome 19 clone CTD-2616J11, com... 40 7.4
33gb|AE004451.1| Pseudomonas aeruginosa PAO1, section 12 of 529 of... 40 7.4
34emb|AL355916.2|CNS05TD1 Human chromosome 14 DNA sequence BAC R-4... 40 7.4
35dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.4
36dbj|AP000790.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.4

>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA
          Length = 1061

 Score =  876 bits (442), Expect = 0.0
 Identities = 520/542 (95%), Gaps = 3/542 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagaacagaatcttcctggcgtgcttctttacaaggaaaagctctcctaaatgctccca 60
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 acagagcagaagcttcctggcgtgcttctttacaaggaaaagctctcctaaatgctccca 822

                                                                       
Query: 61  ggcatattttt-gcgatacaggctacaaacacttttacat-ctataggatctgcctgcta 118
           ||| ||||||| ||||||||| || ||||||||||||||  |||||||||||||||||||
Sbjct: 821 ggcttattttttgcgatacagactgcaaacacttttacagactataggatctgcctgcta 762

                                                                       
Query: 119 ctcaaaagtaccgcggacacacatatttacagatccacaagtaccgggcatgggctcctg 178
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 761 ctcaaa-gtaccgcggacacacatatttacagatccacaagtaccgggcatggactcctg 703

                                                                       
Query: 179 cgcctctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactata 238
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 catctctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactata 643

                                                                       
Query: 239 cctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 642 cctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcctgagcatc 583

                                                                       
Query: 299 agagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatc 523

                                                                       
Query: 359 acatctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacg 418
           |||||||||||||||||| ||| |||||||||||||||| || |||||||||||||||||
Sbjct: 522 acatctgcaatcttcgtctttggcccatgtgaagccctcacgtgatcgctcttgacgacg 463

                                                                       
Query: 419 accccgacacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagtgt 478
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 462 accccgacacatcggcgggcactgtcgacaaccgggaggcctgacacgagctggaagtgg 403

                                                                       
Query: 479 ccttcaacctccaccagtgcctggtccgctgtggccatcagcacgggcgtcgacatggcc 538
           ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 402 ccttcaacctccaccagcgcctgctccgctgtgaccatcagcacgggcgtcgacatggcc 343

             
Query: 539 tc 540
           ||
Sbjct: 342 tc 341



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>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA
          Length = 1474

 Score =  839 bits (423), Expect = 0.0
 Identities = 513/539 (95%), Gaps = 3/539 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   cagaatcttcctggcgtgcttctttacaaggaaaagctctcctaaatgctcccaggcata 66
           ||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct: 35  cagaagcttccgggcgtgcttctttacaaggaaaagctctcctaaaagttcccaggctta 94

                                                                       
Query: 67  tttttgcgatacaggctacaaacacttttacat-ctataggatctgcctgctactcaaaa 125
           ||||||||||||||||||||| ||||||||||  |||||| |||||||||||||||||||
Sbjct: 95  tttttgcgatacaggctacaa-cacttttacagactatag-atctgcctgctactcaaaa 152

                                                                       
Query: 126 gtaccgcggacacacatatttacagatccacaagtaccgggcatgggctcctgcgcctct 185
           | |||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||
Sbjct: 153 gcaccgcggacacacatatttacagatccacaagtaccgggcatggactcctgcatctct 212

                                                                       
Query: 186 aaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctatta 245
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 213 aaaacttcagcatggcctccaacgcgcgaagaacgtcgtcgcgggtaactatacctatta 272

                                                                       
Query: 246 cttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagctg 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagctg 332

                                                                       
Query: 306 cggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctg 392

                                                                       
Query: 366 caatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacgaccccga 425
           ||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 393 caatcttcgtctttggcccatgtgaagccctcgcgcaatcgctcttcacgacgaccccga 452

                                                                       
Query: 426 cacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagtgtccttcaa 485
           | |||| ||| ||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 453 cgcatctgcgagcgctgtcgacaaccgggaggcctgacacgagctgaaagtggccttcaa 512

                                                                      
Query: 486 cctccaccagtgcctggtccgctgtggccatcagcacgggcgtcgacatggcctcgcgc 544
           |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 513 cctccaccagcgcctgctccgctgtgaccatcagcacgggcgtcgacatggcctcgcgc 571



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>ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2
           mRNA
          Length = 916

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
           | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571

                                                                       
Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
           |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511

                                                                 
Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457



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>ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2
           mRNA
          Length = 1002

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
           | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571

                                                                       
Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
           |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511

                                                                 
Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457



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>ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2
           mRNA
          Length = 956

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 696 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 637

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
           | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 636 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 577

                                                                       
Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
           |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 576 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 517

                                                                 
Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 516 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 463



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>ref|XM_468415.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 833

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
           | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563

                                                                       
Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
           |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503

                                                                 
Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449



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>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper
            susceptibility protein Hd002A mRNA, complete cds
          Length = 1265

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                        
Query: 183  tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
            |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 1114 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 1055

                                                                        
Query: 243  ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
            | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 1054 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 995

                                                                        
Query: 303  ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
            |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 994  ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 935

                                                                  
Query: 363  ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
            |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 934  ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 881



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>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full
           insert sequence
          Length = 833

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
           | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563

                                                                       
Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
           |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503

                                                                 
Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449



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>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full
           insert sequence
          Length = 994

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 623

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
           | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 622 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 563

                                                                       
Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
           |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 562 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 503

                                                                 
Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 502 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 449



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>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full
           insert sequence
          Length = 916

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
           | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571

                                                                       
Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
           |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511

                                                                 
Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457



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>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full
           insert sequence
          Length = 1002

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 631

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
           | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 630 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 571

                                                                       
Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
           |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 570 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 511

                                                                 
Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 510 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 457



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>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full
           insert sequence
          Length = 1514

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 683 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 624

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
           | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 623 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 564

                                                                       
Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
           |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 563 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 504

                                                                 
Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 503 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 450



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>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full
           insert sequence
          Length = 955

 Score =  210 bits (106), Expect = 4e-51
 Identities = 202/234 (86%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 695 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 636

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagag 302
           | |||||  ||||||| ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 635 tcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcatcagag 576

                                                                       
Query: 303 ctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacat 362
           |||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| |
Sbjct: 575 ctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcactt 516

                                                                 
Query: 363 ctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           |||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 515 ctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 462



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>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced
           resistance protein 1 (Bi1) mRNA, complete cds
          Length = 1098

 Score =  196 bits (99), Expect = 5e-47
 Identities = 202/235 (85%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 183 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactataccta 242
           |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||||
Sbjct: 949 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactataccta 890

                                                                       
Query: 243 ttacttgattgtcctggtttactatcggtaatctgtggatc-ttcttcttgagcatcaga 301
           | |||||  ||||||| ||||| || ||||||||||||||| |||||||| |||||||||
Sbjct: 889 tcacttgtctgtcctgatttacaattggtaatctgtggatccttcttctttagcatcaga 830

                                                                       
Query: 302 gctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcaca 361
           ||||| |||||  | |||||||| ||  ||| ||| ||||| |||||||| |||||||| 
Sbjct: 829 gctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcatcact 770

                                                                  
Query: 362 tctgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacga 416
           ||||||||||||||| |||||||||| |||||||| || || || ||||||||||
Sbjct: 769 tctgcaatcttcgtctttgacccatgagaagccctggcccggtcactcttgacga 715



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>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence
          Length = 803

 Score =  182 bits (92), Expect = 8e-43
 Identities = 291/359 (81%)
 Strand = Plus / Minus

                                                                       
Query: 184 ctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctat 243
           ||||| ||||| |||| | |||||| |||||||||| ||| |||||||||||||||||||
Sbjct: 594 ctaaatcttcaacatgccttccaacacgcgaagaacatcagcgcgggtaactatacctat 535

                                                                       
Query: 244 tacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagc 303
           |||      |||||||||||| |  ||||||||||||||||||||||||||||| ||| |
Sbjct: 534 tacnnnnncgtcctggtttacaactggtaatctgtggatcttcttcttgagcatgagaac 475

                                                                       
Query: 304 tgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatc 363
            || |||||  |||| ||||| ||  | ||||| ||||| ||||||||||||||||| ||
Sbjct: 474 agcagcatccatcacggttttgtcagacgatagtgtgatagctggagatgtcatcacttc 415

                                                                       
Query: 364 tgcaatcttcgtccttgacccatgtgaagccctcgcgcgatcgctcttgacgacgacccc 423
            |  ||||||||| | |||||||| || || || || || ||| |||||||||  |||||
Sbjct: 414 cgatatcttcgtcttggacccatgagaggctcttgcccggtcgttcttgacgatcacccc 355

                                                                       
Query: 424 gacacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagtgtccttc 483
           ||| |||| | || |||||||||| ||||| || || ||||||  || |||||| |  ||
Sbjct: 354 gacgcatctgaggccgctgtcgacgaccggaagccccgacacggcctcgaagtggcactc 295

                                                                      
Query: 484 aacctccaccagtgcctggtccgctgtggccatcagcacgggcgtcgacatggcctcgc 542
            || ||| |||| | |||||| |||||||||| ||||||||| || ||||||| |||||
Sbjct: 294 gacgtcctccagggtctggtctgctgtggccaccagcacgggtgtggacatggtctcgc 236



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                            
Query: 238      acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 297
                |||||| |||||  ||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct: 35111790 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 35111731

                               
Query: 298      cagagctgcggcatc 312
                ||||||||| |||||
Sbjct: 35111730 cagagctgccgcatc 35111716



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 183      tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 241
                |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||
Sbjct: 35111977 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 35111919



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                            
Query: 317      actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 376
                |||||||| ||  ||| ||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 35111621 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 35111562

                      
Query: 377      cttgac 382
                 |||||
Sbjct: 35111561 tttgac 35111556



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>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1202_E07
          Length = 145014

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                        
Query: 238  acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 297
            |||||| |||||  ||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct: 7146 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 7087

                           
Query: 298  cagagctgcggcatc 312
            ||||||||| |||||
Sbjct: 7086 cagagctgccgcatc 7072



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 183  tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 241
            |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||
Sbjct: 7333 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 7275



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                        
Query: 317  actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 376
            |||||||| ||  ||| ||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 6977 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 6918

                  
Query: 377  cttgac 382
             |||||
Sbjct: 6917 tttgac 6912



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>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1136_C12
          Length = 103973

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 67/75 (89%)
 Strand = Plus / Minus

                                                                         
Query: 238   acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 297
             |||||| |||||  ||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct: 84953 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 84894

                            
Query: 298   cagagctgcggcatc 312
             ||||||||| |||||
Sbjct: 84893 cagagctgccgcatc 84879



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 183   tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 241
             |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||
Sbjct: 85140 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 85082



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Minus

                                                                         
Query: 317   actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 376
             |||||||| ||  ||| ||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 84784 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 84725

                   
Query: 377   cttgac 382
              |||||
Sbjct: 84724 tttgac 84719



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>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full
            insert sequence
          Length = 4217

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                        
Query: 238  acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 297
            |||||| |||||  ||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct: 2400 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 2459

                           
Query: 298  cagagctgcggcatc 312
            ||||||||| |||||
Sbjct: 2460 cagagctgccgcatc 2474



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                       
Query: 183  tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 241
            |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||
Sbjct: 2213 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 2271



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                        
Query: 317  actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 376
            |||||||| ||  ||| ||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct: 2569 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 2628

                  
Query: 377  cttgac 382
             |||||
Sbjct: 2629 tttgac 2634



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>gb|AC130222.4| Mus musculus BAC clone RP23-18K19 from chromosome 12, complete sequence
          Length = 218608

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 476   tgtccttcaacctccaccagtgc 498
             |||||||||||||||||||||||
Sbjct: 45611 tgtccttcaacctccaccagtgc 45589



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>gb|AC122227.4| Mus musculus BAC clone RP23-131H10 from chromosome 12, complete sequence
          Length = 208332

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 476    tgtccttcaacctccaccagtgc 498
              |||||||||||||||||||||||
Sbjct: 193011 tgtccttcaacctccaccagtgc 192989



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>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence
          Length = 168278

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 86     aaacacttttacatctatagga 107
              ||||||||||||||||||||||
Sbjct: 101167 aaacacttttacatctatagga 101188



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 428     catcggcgggcgctgtcgac 447
               ||||||||||||||||||||
Sbjct: 1917126 catcggcgggcgctgtcgac 1917145



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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 489     ccaccagtgcctggtccgct 508
               ||||||||||||||||||||
Sbjct: 3853662 ccaccagtgcctggtccgct 3853643



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>ref|XM_841417.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4760)
            partial mRNA
          Length = 3087

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 274  tctgtggatcttcttcttga 293
            ||||||||||||||||||||
Sbjct: 1378 tctgtggatcttcttcttga 1397



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>gb|AC018738.4| Homo sapiens BAC clone RP11-419H23 from 2, complete sequence
          Length = 178530

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    tcttcttgagcatcagagct 304
              ||||||||||||||||||||
Sbjct: 171536 tcttcttgagcatcagagct 171517



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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 517     cagcacgggcgtcgacatggcctcgcgc 544
               |||||| |||| ||||||||||||||||
Sbjct: 2872530 cagcactggcgacgacatggcctcgcgc 2872557



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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete
             sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   catcggcgggcgctgtcgac 447
             ||||||||||||||||||||
Sbjct: 75837 catcggcgggcgctgtcgac 75856



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>gb|AC073576.23| Homo sapiens 12 BAC RP11-363M20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 180309

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 472    gaagtgtccttcaacctcca 491
              ||||||||||||||||||||
Sbjct: 146928 gaagtgtccttcaacctcca 146909



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 428     catcggcgggcgctgtcgac 447
               ||||||||||||||||||||
Sbjct: 2567233 catcggcgggcgctgtcgac 2567252



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>gb|AF131950.1| Human papillomavirus candHPV85, complete genome
          Length = 7812

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 69   tttgcgatacaggctacaaa 88
            ||||||||||||||||||||
Sbjct: 3734 tttgcgatacaggctacaaa 3753



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>gb|AC008750.9| Homo sapiens chromosome 19 clone CTD-2616J11, complete sequence
          Length = 143045

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    gctctcctaaatgctcccag 61
             ||||||||||||||||||||
Sbjct: 76812 gctctcctaaatgctcccag 76793



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>gb|AE004451.1| Pseudomonas aeruginosa PAO1, section 12 of 529 of the complete genome
          Length = 10700

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 199  ggcctccaacgcgcgaagaacgtcatcg 226
            ||||| ||| ||||||||||||||||||
Sbjct: 2227 ggcctgcaaggcgcgaagaacgtcatcg 2200



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>emb|AL355916.2|CNS05TD1 Human chromosome 14 DNA sequence BAC R-47I22 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178484

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 472    gaagtgtccttcaacctcca 491
              ||||||||||||||||||||
Sbjct: 135650 gaagtgtccttcaacctcca 135631



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>dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2514A21, complete
              sequence
          Length = 130977

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    acatatttacagatccacaa 158
              ||||||||||||||||||||
Sbjct: 119986 acatatttacagatccacaa 119967



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>dbj|AP000790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736I10, complete
             sequence
          Length = 176944

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   acatatttacagatccacaa 158
             ||||||||||||||||||||
Sbjct: 30122 acatatttacagatccacaa 30103


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,318,264
Number of Sequences: 3902068
Number of extensions: 4318264
Number of successful extensions: 69583
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69346
Number of HSP's gapped (non-prelim): 231
length of query: 544
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 521
effective length of database: 17,143,297,704
effective search space: 8931658103784
effective search space used: 8931658103784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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