ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIGT_MOUSE (Q8BXQ2) GPI transamidase component PIG-T precursor (... 30 2.5
2MT21_ORYSA (P94029) Metallothionein-like protein type 2 30 3.2
3SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like prot... 28 9.4

>PIGT_MOUSE (Q8BXQ2) GPI transamidase component PIG-T precursor|
           (Phosphatidylinositol-glycan biosynthesis, class T
           protein) (Neuronal development-associated protein 7)
          Length = 582

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 7   LHTQEYIYVDKTGKAHEDGTKAVGEAHDNTTQNTVQATRGTY 132
           L +Q  +YVD TG + ++ T  V     +T Q+ +  TR TY
Sbjct: 278 LASQSLVYVDITGYSQDNETLEVSPPPTSTYQDVILGTRKTY 319



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>MT21_ORYSA (P94029) Metallothionein-like protein type 2|
          Length = 82

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 452 TSSQALVMGVASSKGNGPSFEAAAA 378
           T++Q ++MGVA SKG+    EA AA
Sbjct: 34  TTTQTVIMGVAPSKGHAEGLEAGAA 58



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>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1138

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 286 SMPSPCVDSTDHLQVHGLQVQLGPHLHPPFSAAAASNEGPL 408
           S+P   + ST H    G QVQ G   H P+S    S  GP+
Sbjct: 641 SVPGTFLQSTAHSPA-GNQVQAGKQSHIPYSQQRPSGPGPM 680


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,452,500
Number of Sequences: 219361
Number of extensions: 1091028
Number of successful extensions: 3072
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3071
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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