ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2m04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ010573.1|HVU010573 Hordeum vulgare chloroplast gene encoding ATP synthase CFO subunit I, exon 1 (partial) and exon 2 Length = 962 Score = 339 bits (171), Expect = 3e-90 Identities = 175/177 (98%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 732 aatataccgaaacctatataagactagataaatattaagaggactcttccgcctagataa 673 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 672 aaatatatcatggtcagcaaagttgtttctttatttatatttgccctttagttaataatt 613 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 612 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 556
>emb|X02595.1|CHTAATP1 T.aestivum chloroplast gene encoding ATP synthase CF-O subunit I & III Length = 2007 Score = 301 bits (152), Expect = 6e-79 Identities = 171/177 (96%), Gaps = 2/177 (1%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1310 aatataccgaaacctatataagactagataaatattaagaggactcttccgcctagataa 1251 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||| Sbjct: 1250 aaatatatcatggtcagcaaagttgtttctttatttttatttgccctct--ttaataatt 1193 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1192 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 1136
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 301 bits (152), Expect = 6e-79 Identities = 171/177 (96%), Gaps = 2/177 (1%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33990 aatataccgaaacctatataagactagataaatattaagaggactcttccgcctagataa 33931 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||| Sbjct: 33930 aaatatatcatggtcagcaaagttgtttctttatttttatttgccctct--ttaataatt 33873 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33872 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 33816
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33532 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 33473 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 33472 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 33413 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 33412 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 33356
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33532 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 33473 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 33472 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 33413 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 33412 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 33356
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33490 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 33431 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 33430 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 33371 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 33370 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 33314
>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete sequence Length = 148611 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147121 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 147062 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 147061 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 147002 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 147001 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 146945
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 236 bits (119), Expect = 3e-59 Identities = 163/177 (92%), Gaps = 1/177 (0%) Strand = Plus / Minus Query: 2 atataccgnaacctatataagactagataaatattaagaggactcttccgcctagataaa 61 ||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 35882 atatacccaaacttatataagactagatgaatattaagaggactcttccaactagataaa 35823 Query: 62 aatatatcatggtcagcaaagntgtttctttatttatatttgccct-ttagttaataatt 120 ||| ||||||||||||||||| ||||||||||||| | ||||| || ||||||||||||| Sbjct: 35822 aatctatcatggtcagcaaagttgtttctttatttgtgtttgctctgttagttaataatt 35763 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 35762 tcaatttcattaagaaaaactaactaaataaatggaaaataaaaattgatagaattc 35706
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38815 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 38756 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 38755 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 38696 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 38695 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 38639
>emb|AL731605.3|OSJN00246 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042F21, complete sequence Length = 167113 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 165623 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 165564 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 165563 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 165504 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 165503 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 165447
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9080889 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 9080830 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 9080829 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 9080770 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 9080769 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 9080713
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Plus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19961069 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 19961128 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 19961129 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 19961188 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 19961189 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 19961245 Score = 228 bits (115), Expect = 7e-57 Identities = 161/177 (90%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10325387 aatataccgaaacccatataagactagataaatattaagaggactcttctgcctagataa 10325328 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 10325327 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 10325268 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 10325267 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 10325211
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24857429 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 24857370 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 24857369 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 24857310 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 24857309 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 24857253 Score = 129 bits (65), Expect = 5e-27 Identities = 103/115 (89%), Gaps = 2/115 (1%) Strand = Plus / Minus Query: 29 taaatattaagaggactcttccgcctagataaaaatatatcatggtcagcaaagntgttt 88 ||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||| Sbjct: 22878853 taaatattaagaggactcttccgtctagataaaaatcaatcatgggcagcaaagttgtt- 22878795 Query: 89 ctttatttatatttgccctttagttaataatttcaatttcattaagaaaaactaa 143 || |||| |||||||||||||||| | | ||||||||||||||||||||||||| Sbjct: 22878794 -ttcatttgtatttgccctttagtttaaattttcaatttcattaagaaaaactaa 22878741 Score = 56.0 bits (28), Expect = 6e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 11 aacctatataagactagataaatattaagaggactcttccgcctagataaaa 62 |||| |||||||||| |||||||||||| | ||| |||| |||||||||||| Sbjct: 33607937 aacccatataagactggataaatattaataagacacttctgcctagataaaa 33607886
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24974 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 24915 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 24914 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 24855 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 24854 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 24798
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 236 bits (119), Expect = 3e-59 Identities = 163/177 (92%), Gaps = 1/177 (0%) Strand = Plus / Minus Query: 2 atataccgnaacctatataagactagataaatattaagaggactcttccgcctagataaa 61 ||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 35879 atatacccaaacttatataagactagatgaatattaagaggactcttccaactagataaa 35820 Query: 62 aatatatcatggtcagcaaagntgtttctttatttatatttgccct-ttagttaataatt 120 ||| ||||||||||||||||| ||||||||||||| | ||||| || ||||||||||||| Sbjct: 35819 aatctatcatggtcagcaaagttgtttctttatttgtgtttgctctgttagttaataatt 35760 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 35759 tcaatttcattaagaaaaactaactaaataaatggaaaataaaaattgatagaattc 35703
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1215B07 Length = 165957 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18712 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 18653 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 18652 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 18593 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 18592 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 18536
>dbj|AP006847.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, fosmid clone:OSJNOa148N02 Length = 36400 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22428 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 22369 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 22368 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 22309 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 22308 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 22252
>dbj|AK121120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F07, full insert sequence Length = 3220 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3148 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 3089 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 3088 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 3029 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 3028 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 2972
>dbj|AK110794.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-D06, full insert sequence Length = 1537 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 883 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 824 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 823 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 764 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 763 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 707
>gb|BT024124.1| Zea mays clone EL01N0450D02 mRNA sequence Length = 1622 Score = 236 bits (119), Expect = 3e-59 Identities = 163/177 (92%), Gaps = 1/177 (0%) Strand = Plus / Minus Query: 2 atataccgnaacctatataagactagataaatattaagaggactcttccgcctagataaa 61 ||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 1522 atatacccaaacttatataagactagatgaatattaagaggactcttccaactagataaa 1463 Query: 62 aatatatcatggtcagcaaagntgtttctttatttatatttgccct-ttagttaataatt 120 ||| ||||||||||||||||| ||||||||||||| | ||||| || ||||||||||||| Sbjct: 1462 aatctatcatggtcagcaaagttgtttctttatttgtgtttgctctgttagttaataatt 1403 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct: 1402 tcaatttcattaagaaaaactaactaaataaatggaaaataaaaattgatagaattc 1346
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Plus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19972345 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 19972404 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 19972405 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 19972464 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 19972465 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 19972521 Score = 228 bits (115), Expect = 7e-57 Identities = 161/177 (90%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10331426 aatataccgaaacccatataagactagataaatattaagaggactcttctgcctagataa 10331367 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 10331366 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 10331307 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 10331306 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 10331250
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 236 bits (119), Expect = 3e-59 Identities = 162/177 (91%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33464 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 33405 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 33404 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 33345 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 33344 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 33288
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 228 bits (115), Expect = 7e-57 Identities = 161/177 (90%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33531 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 33472 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 33471 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 33412 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||| ||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 33411 tcattttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 33355
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 228 bits (115), Expect = 7e-57 Identities = 161/177 (90%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 31779 aatataccgaaacccatataagactagataaatattaagaggactcttctgcctagataa 31720 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 31719 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 31660 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 31659 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 31603
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 228 bits (115), Expect = 7e-57 Identities = 162/177 (91%), Gaps = 1/177 (0%) Strand = Plus / Minus Query: 2 atataccgnaacctatataagactagataaatattaagaggactcttccgcctagataaa 61 ||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 98017 atatacccaaacttatataagactagatgaatattaagaggactcttccaactagataaa 97958 Query: 62 aatatatcatggtcagcaaagntgtttctttatttatatttgccct-ttagttaataatt 120 ||| ||||||||||||||||| ||||||||||||| | ||||| || ||||||||||||| Sbjct: 97957 aatctatcatggtcagcaaagttgtttctttatttgtgtttgctctgttagttaataatt 97898 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| Sbjct: 97897 tcaatttcattaagaaaaacaaactaaataaatggaaaataaaaattgatagaattc 97841
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 228 bits (115), Expect = 7e-57 Identities = 161/177 (90%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 106712 aatataccgaaacccatataagactagataaatattaagaggactcttctgcctagataa 106653 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 106652 aaatctatcgtgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 106593 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 106592 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 106536
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 228 bits (115), Expect = 7e-57 Identities = 161/177 (90%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 4363520 aatataccgaaacccatataagactagataaatattaagaggactcttctgcctagataa 4363461 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| | |||||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 4363460 aaatctgtcatgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 4363401 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 4363400 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 4363344
>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1279D09 Length = 134793 Score = 228 bits (115), Expect = 7e-57 Identities = 161/177 (90%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 66338 aatataccgaaacccatataagactagataaatattaagaggactcttctgcctagataa 66279 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| | |||||| |||||||| ||||| ||||||| |||||||||||||||||| | || Sbjct: 66278 aaatctgtcatgggcagcaaagttgtttttttatttgtatttgccctttagttaaaattt 66219 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 ||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 66218 tcaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 66162
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 228 bits (115), Expect = 7e-57 Identities = 162/177 (91%), Gaps = 1/177 (0%) Strand = Plus / Minus Query: 2 atataccgnaacctatataagactagataaatattaagaggactcttccgcctagataaa 61 ||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 36390 atatacccaaacttatataagactagatgaatattaagaggactcttccaactagataaa 36331 Query: 62 aatatatcatggtcagcaaagntgtttctttatttatatttgccct-ttagttaataatt 120 ||| ||||||||||||||||| ||||||||||||| | ||||| || ||||||||||||| Sbjct: 36330 aatctatcatggtcagcaaagttgtttctttatttgtgtttgctctgttagttaataatt 36271 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| Sbjct: 36270 tcaatttcattaagaaaaacaaactaaataaatggaaaataaaaattgatagaattc 36214
>gb|AC105747.4| Oryza sativa chromosome 3 BAC OSJNBb0101N11 genomic sequence, complete sequence Length = 138345 Score = 220 bits (111), Expect = 2e-54 Identities = 160/177 (90%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19115 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 19056 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| ||||| |||||||||||| | || Sbjct: 19055 aaatctatcgtgggcagcaaagttgtttttttatttgtattttccctttagttaaaattt 18996 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 | ||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 18995 tgaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 18939
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 220 bits (111), Expect = 2e-54 Identities = 160/177 (90%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27318908 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 27318849 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| ||||| |||||||||||| | || Sbjct: 27318848 aaatctatcgtgggcagcaaagttgtttttttatttgtattttccctttagttaaaattt 27318789 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 | ||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 27318788 tgaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 27318732 Score = 103 bits (52), Expect = 3e-19 Identities = 97/111 (87%), Gaps = 1/111 (0%) Strand = Plus / Plus Query: 56 gataaaaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaa 115 ||||||||| |||||||| || ||||| | ||| ||||||| ||||| |||||||||||| Sbjct: 17423020 gataaaaatctatcatgggcaacaaagttatttttttatttgtattttccctttagttaa 17423079 Query: 116 taatttcaatttcattaagaaaaactaactaaataaatggaaaatgaaaat 166 | ||||||||||||||||||||||||| || | |||| |||||||||||| Sbjct: 17423080 aattttcaatttcattaagaaaaactaaatagaaaaat-gaaaatgaaaat 17423129 Score = 63.9 bits (32), Expect = 3e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 aatataccgnaacctatataagactagataaatattaagagga 43 ||||||||| |||| |||||| ||||||||||||||||||||| Sbjct: 17422979 aatataccgcaacccatataatactagataaatattaagagga 17423021
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 220 bits (111), Expect = 2e-54 Identities = 160/177 (90%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagaggactcttccgcctagataa 60 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27410231 aatataccgaaacccatataagactagataaatattaagaggactcttccgcctagataa 27410172 Query: 61 aaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaataatt 120 |||| |||| ||| |||||||| ||||| ||||||| ||||| |||||||||||| | || Sbjct: 27410171 aaatctatcgtgggcagcaaagttgtttttttatttgtattttccctttagttaaaattt 27410112 Query: 121 tcaatttcattaagaaaaactaactaaataaatggaaaatgaaaattaatagaattc 177 | ||||||||||||||||||||| || | ||||||||||||||||| ||||||||| Sbjct: 27410111 tgaatttcattaagaaaaactaaatagaaaaatggaaaatgaaaatggatagaattc 27410055 Score = 103 bits (52), Expect = 3e-19 Identities = 97/111 (87%), Gaps = 1/111 (0%) Strand = Plus / Plus Query: 56 gataaaaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaa 115 ||||||||| |||||||| || ||||| | ||| ||||||| ||||| |||||||||||| Sbjct: 17416561 gataaaaatctatcatgggcaacaaagttatttttttatttgtattttccctttagttaa 17416620 Query: 116 taatttcaatttcattaagaaaaactaactaaataaatggaaaatgaaaat 166 | ||||||||||||||||||||||||| || | |||| |||||||||||| Sbjct: 17416621 aattttcaatttcattaagaaaaactaaatagaaaaat-gaaaatgaaaat 17416670 Score = 63.9 bits (32), Expect = 3e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 1 aatataccgnaacctatataagactagataaatattaagagga 43 ||||||||| |||| |||||| ||||||||||||||||||||| Sbjct: 17416520 aatataccgcaacccatataatactagataaatattaagagga 17416562
>dbj|AP005640.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0006O15 Length = 139723 Score = 129 bits (65), Expect = 5e-27 Identities = 103/115 (89%), Gaps = 2/115 (1%) Strand = Plus / Minus Query: 29 taaatattaagaggactcttccgcctagataaaaatatatcatggtcagcaaagntgttt 88 ||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||| Sbjct: 112191 taaatattaagaggactcttccgtctagataaaaatcaatcatgggcagcaaagttgtt- 112133 Query: 89 ctttatttatatttgccctttagttaataatttcaatttcattaagaaaaactaa 143 || |||| |||||||||||||||| | | ||||||||||||||||||||||||| Sbjct: 112132 -ttcatttgtatttgccctttagtttaaattttcaatttcattaagaaaaactaa 112079
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 117 bits (59), Expect = 2e-23 Identities = 88/98 (89%) Strand = Plus / Minus Query: 80 aagntgtttctttatttatatttgccctttagttaataatttcaatttcattaagaaaaa 139 ||| ||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||| Sbjct: 9756530 aagttgtttttttatttgtatttgccctttagttaaaattttcaatttcattaagaaaaa 9756471 Query: 140 ctaactaaataaatggaaaatgaaaattaatagaattc 177 |||| || | ||||||||||||||||| ||||||||| Sbjct: 9756470 ctaaatagaaaaatggaaaatgaaaatggatagaattc 9756433 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 19303529 aagaaaaactaactaaataa 19303548 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 15369867 aagaaaaactaactaaataa 15369886
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 117 bits (59), Expect = 2e-23 Identities = 88/98 (89%) Strand = Plus / Minus Query: 80 aagntgtttctttatttatatttgccctttagttaataatttcaatttcattaagaaaaa 139 ||| ||||| ||||||| |||||||||||||||||| | ||||||||||||||||||||| Sbjct: 46772 aagttgtttttttatttgtatttgccctttagttaaaattttcaatttcattaagaaaaa 46713 Query: 140 ctaactaaataaatggaaaatgaaaattaatagaattc 177 |||| || | ||||||||||||||||| ||||||||| Sbjct: 46712 ctaaatagaaaaatggaaaatgaaaatggatagaattc 46675
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 103 bits (52), Expect = 3e-19 Identities = 97/111 (87%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 56 gataaaaatatatcatggtcagcaaagntgtttctttatttatatttgccctttagttaa 115 ||||||||| |||||||| || ||||| | ||| ||||||| ||||| |||||||||||| Sbjct: 140723 gataaaaatctatcatgggcaacaaagttatttttttatttgtattttccctttagttaa 140664 Query: 116 taatttcaatttcattaagaaaaactaactaaataaatggaaaatgaaaat 166 | ||||||||||||||||||||||||| || | |||| |||||||||||| Sbjct: 140663 aattttcaatttcattaagaaaaactaaatagaaaaat-gaaaatgaaaat 140614 Score = 63.9 bits (32), Expect = 3e-07 Identities = 40/43 (93%) Strand = Plus / Minus Query: 1 aatataccgnaacctatataagactagataaatattaagagga 43 ||||||||| |||| |||||| ||||||||||||||||||||| Sbjct: 140764 aatataccgcaacccatataatactagataaatattaagagga 140722
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 61.9 bits (31), Expect = 1e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 75 cagcaaagntgtttctttatttatatttgccctttagttaataatttcaa 124 |||||||| ||||| ||||||| |||||||||||||||||| | |||||| Sbjct: 4676514 cagcaaagttgtttttttatttgtatttgccctttagttaaaattttcaa 4676465
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 61.9 bits (31), Expect = 1e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 75 cagcaaagntgtttctttatttatatttgccctttagttaataatttcaa 124 |||||||| ||||| ||||||| |||||||||||||||||| | |||||| Sbjct: 4676495 cagcaaagttgtttttttatttgtatttgccctttagttaaaattttcaa 4676446
>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147355 Score = 61.9 bits (31), Expect = 1e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 75 cagcaaagntgtttctttatttatatttgccctttagttaataatttcaa 124 |||||||| ||||| ||||||| |||||||||||||||||| | |||||| Sbjct: 75613 cagcaaagttgtttttttatttgtatttgccctttagttaaaattttcaa 75662
>dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1046_F07 Length = 114184 Score = 56.0 bits (28), Expect = 6e-05 Identities = 46/52 (88%) Strand = Plus / Minus Query: 11 aacctatataagactagataaatattaagaggactcttccgcctagataaaa 62 |||| |||||||||| |||||||||||| | ||| |||| |||||||||||| Sbjct: 78608 aacccatataagactggataaatattaataagacacttctgcctagataaaa 78557
>gb|AC150751.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNOa0279P04, complete sequence Length = 32479 Score = 54.0 bits (27), Expect = 2e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 91 ttatttatatttgccctttagttaataatttcaatttcattaagaaaaact 141 |||||| |||||| ||||||||||| | | |||||||||||| |||||||| Sbjct: 26193 ttatttgtatttgtcctttagttaaaattgtcaatttcattatgaaaaact 26243
>gb|AF250209.1|AF250209 Gossypium hirsutum A-subgenome alcohol dehydrogenase E (AdhE) gene, partial cds Length = 1331 Score = 46.1 bits (23), Expect = 0.059 Identities = 29/31 (93%) Strand = Plus / Minus Query: 137 aaactaactaaataaatggaaaatgaaaatt 167 |||||||| ||||||||||||||||||||| Sbjct: 664 aaactaacagaataaatggaaaatgaaaatt 634
>ref|XM_740900.1| Plasmodium chabaudi chabaudi T-complex protein eta subunit (PC000721.02.0) partial mRNA Length = 1605 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Minus Query: 60 aaaatatatcatggtcagcaaa 81 |||||||||||||||||||||| Sbjct: 919 aaaatatatcatggtcagcaaa 898
>emb|CR925861.1| Zebrafish DNA sequence from clone DKEY-187K19 in linkage group 17, complete sequence Length = 8027 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 146 aaataaatggaaaatgaaaatt 167 |||||||||||||||||||||| Sbjct: 7246 aaataaatggaaaatgaaaatt 7267
>gb|AC092691.3| Homo sapiens 3q BAC RP11-768G7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170215 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 155 gaaaatgaaaattaatagaatt 176 |||||||||||||||||||||| Sbjct: 118950 gaaaatgaaaattaatagaatt 118971
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 44.1 bits (22), Expect = 0.23 Identities = 25/26 (96%) Strand = Plus / Minus Query: 122 caatttcattaagaaaaactaactaa 147 |||||||||||||||| ||||||||| Sbjct: 1424736 caatttcattaagaaagactaactaa 1424711
>gb|AE002115.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 16 of 59 of the complete genome Length = 11126 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 110 agttaataatttcaatttcat 130 ||||||||||||||||||||| Sbjct: 9269 agttaataatttcaatttcat 9249
>emb|CR956417.1| Pig DNA sequence from clone CH242-300K12 on chromosome 17, complete sequence Length = 176004 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 agaaaaactaactaaataaat 153 ||||||||||||||||||||| Sbjct: 34749 agaaaaactaactaaataaat 34729
>emb|AL162712.16| Human DNA sequence from clone RP11-158A8 on chromosome 13 Contains a novel gene, complete sequence Length = 115331 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 aatttcaatttcattaagaaa 137 ||||||||||||||||||||| Sbjct: 14612 aatttcaatttcattaagaaa 14632
>emb|AL121896.11|HSA287B20 Human DNA sequence from clone RP11-287B20 on chromosome 20 Contains part of the gene for KIAA1272 for a protein similar to rat tulip proteins 1 and 2, complete sequence Length = 168545 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 aaaaactaactaaataaatggaaaa 159 |||||||| |||||||||||||||| Sbjct: 154881 aaaaactacctaaataaatggaaaa 154857
>emb|AL035555.11|HS217P22 Human DNA sequence from clone RP1-217P22 on chromosome 6p21.1-21.31 Contains part of the DNAH8 gene for dynein axonemal heavy polypeptide 8 and a novel pseudogene similar to part of zuotin related factor-1 (ZRF1), complete sequence Length = 130796 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 aatggaaaatgaaaattaata 171 ||||||||||||||||||||| Sbjct: 76287 aatggaaaatgaaaattaata 76267
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 aaaaactaactaaataaatgg 155 ||||||||||||||||||||| Sbjct: 220067 aaaaactaactaaataaatgg 220087
>emb|BX511260.11| Zebrafish DNA sequence from clone CH211-121A2, complete sequence Length = 190733 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataaatgga 156 |||||||||||| |||||||||||| Sbjct: 21362 aagaaaaactaattaaataaatgga 21386
>emb|BX571836.25| Zebrafish DNA sequence from clone CH211-244M9 in linkage group 17, complete sequence Length = 178691 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataaa 152 ||||||||||||||||||||| Sbjct: 84579 aagaaaaactaactaaataaa 84599
>gb|AC022402.5| Homo sapiens chromosome 06 clone RP11-70I3, complete sequence Length = 164270 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 aatggaaaatgaaaattaata 171 ||||||||||||||||||||| Sbjct: 53320 aatggaaaatgaaaattaata 53300
>gb|AC008573.5| Homo sapiens chromosome 5 clone CTC-551I11, complete sequence Length = 169544 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 attaagaaaaactaactaaataaat 153 ||||| ||||||||||||||||||| Sbjct: 95912 attaaaaaaaactaactaaataaat 95888
>gb|AC153946.10| Mus musculus 10 BAC RP24-416M20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 151904 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 aagactagataaatattaaga 40 ||||||||||||||||||||| Sbjct: 1791 aagactagataaatattaaga 1771
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataaa 152 ||||||||||||||||||||| Sbjct: 4559552 aagaaaaactaactaaataaa 4559572
>gb|AC026446.4| Homo sapiens chromosome 5 clone CTD-2313E2, complete sequence Length = 135499 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Minus Query: 129 attaagaaaaactaactaaataaat 153 ||||| ||||||||||||||||||| Sbjct: 130016 attaaaaaaaactaactaaataaat 129992
>gb|AC106895.5| Homo sapiens BAC clone RP11-161D15 from 4, complete sequence Length = 135450 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 ataaatggaaaatgaaaatta 168 ||||||||||||||||||||| Sbjct: 119509 ataaatggaaaatgaaaatta 119529
>gb|AC007560.4| Homo sapiens BAC clone RP11-386G20 from 2, complete sequence Length = 124185 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Minus Query: 130 ttaagaaaaactaactaaataaatg 154 ||||||||| ||||||||||||||| Sbjct: 122444 ttaagaaaatctaactaaataaatg 122420
>gb|AC010636.6|AC010636 Homo sapiens chromosome 19 clone CTD-2332E11, complete sequence Length = 179393 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 agaaaaactaactaaataaat 153 ||||||||||||||||||||| Sbjct: 36124 agaaaaactaactaaataaat 36104
>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19, complete sequence Length = 180994 Score = 42.1 bits (21), Expect = 0.92 Identities = 24/25 (96%) Strand = Plus / Minus Query: 132 aagaaaaactaactaaataaatgga 156 |||||||||||| |||||||||||| Sbjct: 155157 aagaaaaactaattaaataaatgga 155133
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 aaaaactaactaaataaatgg 155 ||||||||||||||||||||| Sbjct: 266840 aaaaactaactaaataaatgg 266860
>gb|CP000016.1| Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome Length = 791654 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 123 aatttcattaagaaaaactaa 143 ||||||||||||||||||||| Sbjct: 83555 aatttcattaagaaaaactaa 83535
>emb|CT806410.3| CH251-575K15, complete sequence Length = 155922 Score = 42.1 bits (21), Expect = 0.92 Identities = 27/29 (93%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataaatggaaaat 160 |||||||||| || ||||||||||||||| Sbjct: 108752 aagaaaaactcacaaaataaatggaaaat 108780
>gb|AC153947.3| Mus musculus 10 BAC RP24-408C20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 209414 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 aagactagataaatattaaga 40 ||||||||||||||||||||| Sbjct: 189798 aagactagataaatattaaga 189778
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 42.1 bits (21), Expect = 0.92 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 gtcagcaaagntgtttctttattt 96 |||||||||| ||||||||||||| Sbjct: 13175 gtcagcaaagttgtttctttattt 13198
>emb|CT573089.2| RP43-058A24, complete sequence Length = 216040 Score = 42.1 bits (21), Expect = 0.92 Identities = 27/29 (93%) Strand = Plus / Minus Query: 132 aagaaaaactaactaaataaatggaaaat 160 |||||||||| || ||||||||||||||| Sbjct: 74890 aagaaaaactcacaaaataaatggaaaat 74862
>gb|AC147447.3| Gallus gallus BAC clone CH261-9P3 from chromosome unknown, complete sequence Length = 162933 Score = 42.1 bits (21), Expect = 0.92 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 aaataaatggaaaatgaaaat 166 ||||||||||||||||||||| Sbjct: 29571 aaataaatggaaaatgaaaat 29551
>gb|AC145325.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0034E03 map near 50283S, complete sequence Length = 134074 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 133934 aagaaaaactaactaaataa 133953
>gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0037B06 map near 50283S, complete sequence Length = 149398 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 51402 aagaaaaactaactaaataa 51421 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 43262 aagaaaaactaactaaataa 43281
>gb|AC146147.3| Pan troglodytes BAC clone RP43-2J16 from 7, complete sequence Length = 167352 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 atttcattaagaaaaactaa 143 |||||||||||||||||||| Sbjct: 80097 atttcattaagaaaaactaa 80078
>gb|AC127588.3| Mus musculus BAC clone RP23-106G21 from chromosome 18, complete sequence Length = 180320 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 aaactaactaaataaatggaaaat 160 ||||||||||||||||| |||||| Sbjct: 168390 aaactaactaaataaattgaaaat 168367
>gb|AC158364.4| Mus musculus BAC clone RP23-187J8 from chromosome 8, complete sequence Length = 208153 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gaaaaactaactaaataaat 153 |||||||||||||||||||| Sbjct: 112734 gaaaaactaactaaataaat 112715
>gb|AC116111.17| Mus musculus chromosome 10, clone RP23-23B18, complete sequence Length = 211888 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aaaaactaactaaataaatg 154 |||||||||||||||||||| Sbjct: 89656 aaaaactaactaaataaatg 89675
>emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromosome 7, complete sequence Length = 122162 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 141 taactaaataaatggaaaatgaaa 164 |||||||||||| ||||||||||| Sbjct: 53988 taactaaataaagggaaaatgaaa 54011
>gb|AC099710.8| Mus musculus, clone RP23-366C6, complete sequence Length = 225122 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 aataatttcaatttcattaa 133 |||||||||||||||||||| Sbjct: 81834 aataatttcaatttcattaa 81853
>emb|CR536601.8| Platypus DNA sequence from clone XX-307A9, complete sequence Length = 191674 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 139 actaactaaataaatggaaaatga 162 |||||| ||||||||||||||||| Sbjct: 186395 actaacaaaataaatggaaaatga 186372
>gb|AC122304.4| Mus musculus BAC clone RP23-283G11 from 18, complete sequence Length = 184090 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 aaactaactaaataaatggaaaat 160 ||||||||||||||||| |||||| Sbjct: 28304 aaactaactaaataaattgaaaat 28281
>gb|AC121972.2| Mus musculus BAC clone RP24-276H18 from 2, complete sequence Length = 193641 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 taactaaataaatggaaaat 160 |||||||||||||||||||| Sbjct: 34516 taactaaataaatggaaaat 34535
>gb|AC107864.10| Mus musculus chromosome 10, clone RP23-388A14, complete sequence Length = 207955 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aaaaactaactaaataaatg 154 |||||||||||||||||||| Sbjct: 191596 aaaaactaactaaataaatg 191615
>gb|AC004594.2| Homo sapiens PAC clone RP5-1101C3 from 7, complete sequence Length = 151874 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 atttcattaagaaaaactaa 143 |||||||||||||||||||| Sbjct: 32538 atttcattaagaaaaactaa 32519
>gb|AC120122.10| Mus musculus chromosome 10, clone RP23-75O24, complete sequence Length = 144972 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 aataaatggaaaatgaaaat 166 |||||||||||||||||||| Sbjct: 25564 aataaatggaaaatgaaaat 25545
>gb|AF317907.1| Arabidopsis thaliana BABY BOOM (BBM) gene, complete cds Length = 5151 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 aaataaatggaaaatgaaaattaa 169 |||||||||| ||||||||||||| Sbjct: 3352 aaataaatggtaaatgaaaattaa 3329
>gb|AC115747.8| Mus musculus chromosome 10, clone RP23-8P5, complete sequence Length = 193706 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aataaatggaaaatgaaaat 166 |||||||||||||||||||| Sbjct: 8467 aataaatggaaaatgaaaat 8486
>gb|AC149493.7| Medicago truncatula clone mth2-116k17, complete sequence Length = 105229 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 145 taaataaatggaaaatgaaaatta 168 |||||||||| ||||||||||||| Sbjct: 100759 taaataaatgaaaaatgaaaatta 100736
>emb|CR361556.8| Zebrafish DNA sequence from clone DKEY-97G1 in linkage group 24, complete sequence Length = 106934 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aaaaactaactaaataaatg 154 |||||||||||||||||||| Sbjct: 78106 aaaaactaactaaataaatg 78125
>emb|Z83850.1|HS82J11 Human DNA sequence from clone RP1-82J11 on chromosome Xq22, complete sequence Length = 132981 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 146 aaataaatggaaaatgaaaattaataga 173 ||||||||||||||| |||| ||||||| Sbjct: 12623 aaataaatggaaaataaaaaataataga 12596
>emb|AL592466.9| Human DNA sequence from clone RP11-428G2 on chromosome 10 Contains a novel gene, complete sequence Length = 113271 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 taaatggaaaatgaaaatta 168 |||||||||||||||||||| Sbjct: 93514 taaatggaaaatgaaaatta 93495
>emb|AL590439.12| Human DNA sequence from clone RP11-394I23 on chromosome 10 Contains a novel gene (FLJ13397) (CARP) and a CpG island, complete sequence Length = 192044 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 taaataaatggaaaatgaaa 164 |||||||||||||||||||| Sbjct: 169778 taaataaatggaaaatgaaa 169759
>emb|AL442064.10| Human DNA sequence from clone RP11-272D1 on chromosome 9 Contains the 3' end of the EDG2 gene for endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2, complete sequence Length = 169905 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 130 ttaagaaaaactaactaaataaatggaa 157 |||||||||| || |||||||||||||| Sbjct: 40662 ttaagaaaaaatacctaaataaatggaa 40689
>emb|AL353667.10| Human DNA sequence from clone RP11-125B21 on chromosome 9p24.1-24.3 Contains the 3' end of a novel gene (FLJ35024), complete sequence Length = 168366 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 148 ataaatggaaaatgaaaattaata 171 |||||||||||||| ||||||||| Sbjct: 83564 ataaatggaaaatgcaaattaata 83541
>emb|AL157881.14| Human DNA sequence from clone RP11-104M22 on chromosome 9q31.1-32 Contains the 3' end of the MUSK gene for muscle, skeletal, receptor tyrosine kinase and the 3' end of the EDG2 gene for endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2, complete sequence Length = 162726 Score = 40.1 bits (20), Expect = 3.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 130 ttaagaaaaactaactaaataaatggaa 157 |||||||||| || |||||||||||||| Sbjct: 124040 ttaagaaaaaatacctaaataaatggaa 124067
>emb|AL023095.1|HS1059E7 Human DNA sequence from clone RP5-1059E7 on chromosome Xq22.1-22.3 Contains part of the DACH2 gene for dachshund homolog 2 (Drosophila) and a chromosome 14 open reading frame 111 (C14orf111) pseudogene, complete sequence Length = 112585 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 taaataaatggaaaatgaaa 164 |||||||||||||||||||| Sbjct: 27208 taaataaatggaaaatgaaa 27189
>emb|AL391142.1|ATT10B6 Arabidopsis thaliana DNA chromosome 5, BAC clone T10B6 (ESSA project) Length = 33563 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 aaataaatggaaaatgaaaattaa 169 |||||||||| ||||||||||||| Sbjct: 28037 aaataaatggtaaatgaaaattaa 28060
>emb|AL117183.1|SPCP1E11 S.pombe chromosome III p1 clone p1E11 Length = 25057 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 tttcaatttcattaagaaaa 138 |||||||||||||||||||| Sbjct: 20919 tttcaatttcattaagaaaa 20938
>gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequence Length = 95814 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ataaatggaaaatgaaaatt 167 |||||||||||||||||||| Sbjct: 15932 ataaatggaaaatgaaaatt 15913
>emb|AL691494.15| Mouse DNA sequence from clone RP23-294J14 on chromosome 11 Contains the 5' end of the Hlf gene for hepatic leukemia factor, complete sequence Length = 57014 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 atggaaaatgaaaattaata 171 |||||||||||||||||||| Sbjct: 29660 atggaaaatgaaaattaata 29641
>emb|BX548022.6| Zebrafish DNA sequence from clone DKEY-108E7 in linkage group 24, complete sequence Length = 133412 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aaaaactaactaaataaatg 154 |||||||||||||||||||| Sbjct: 120714 aaaaactaactaaataaatg 120733
>gb|AC015914.8| Homo sapiens chromosome 15, clone RP11-111E14, complete sequence Length = 170078 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 aagaaaaactaactaaataaatgg 155 ||||| |||||||||||||||||| Sbjct: 113852 aagaataactaactaaataaatgg 113829
>gb|DQ205649.1| Phaseolus vulgaris DNA mismatch repair protein (Msh1) gene, complete cds Length = 22288 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 taataatttcaatttcatta 132 |||||||||||||||||||| Sbjct: 2326 taataatttcaatttcatta 2307
>gb|AC090138.5| Homo sapiens, clone RP11-63C8, complete sequence Length = 189231 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 tgtttctttatttatatttg 103 |||||||||||||||||||| Sbjct: 49423 tgtttctttatttatatttg 49404
>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome Length = 859006 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 attaagaaaaactaactaaataaa 152 |||||||||||||||| ||||||| Sbjct: 420412 attaagaaaaactaacgaaataaa 420435
>gb|AC008709.6| Homo sapiens chromosome 5 clone CTB-78O4, complete sequence Length = 114421 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ctaaataaatggaaaatgaa 163 |||||||||||||||||||| Sbjct: 105211 ctaaataaatggaaaatgaa 105192
>gb|AC010275.6| Homo sapiens chromosome 5 clone CTC-499J9, complete sequence Length = 197255 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ctaaataaatggaaaatgaa 163 |||||||||||||||||||| Sbjct: 13069 ctaaataaatggaaaatgaa 13088
>gb|AC008353.4|AC008353 Drosophila melanogaster, chromosome 2R, region 60C-60C, BAC clone BACR02A05, complete sequence Length = 172826 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 aaatgaaaattaatagaatt 176 |||||||||||||||||||| Sbjct: 94999 aaatgaaaattaatagaatt 94980
>gb|AC010468.5|AC010468 Homo sapiens chromosome 5 clone CTD-2290C20, complete sequence Length = 122102 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ctaaataaatggaaaatgaa 163 |||||||||||||||||||| Sbjct: 8809 ctaaataaatggaaaatgaa 8790
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 14693022 aagaaaaactaactaaataa 14693003 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 14684882 aagaaaaactaactaaataa 14684863
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 17781744 aagaaaaactaactaaataa 17781725
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 14068183 aagaaaaactaactaaataa 14068202 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 6939060 aagaaaaactaactaaataa 6939079
>gb|AC104840.2| Homo sapiens BAC clone RP11-10E9 from 4, complete sequence Length = 159946 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ttaataatttcaatttcatt 131 |||||||||||||||||||| Sbjct: 5650 ttaataatttcaatttcatt 5669
>gb|AC069275.3|AC069275 Homo sapiens chromosome 3 clone RP11-194C9 map 3p, complete sequence Length = 151142 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 taagaaaaactaactaaataaatg 154 ||||||||| |||||||||||||| Sbjct: 118186 taagaaaaaataactaaataaatg 118163
>gb|AC023472.4|AC023472 Homo sapiens chromosome 3 clone RP11-156B21 map 3p, complete sequence Length = 167220 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 taagaaaaactaactaaataaatg 154 ||||||||| |||||||||||||| Sbjct: 81471 taagaaaaaataactaaataaatg 81448
>ref|XM_235049.3| PREDICTED: Rattus norvegicus PCTAIRE-motif protein kinase 2 (Pctk2), mRNA Length = 3371 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ataaatggaaaatgaaaatt 167 |||||||||||||||||||| Sbjct: 3058 ataaatggaaaatgaaaatt 3077
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 106784 aagaaaaactaactaaataa 106803
>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E07 Length = 159440 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 60878 aagaaaaactaactaaataa 60897
>dbj|AP004675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0709D11 Length = 146856 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 3250 aagaaaaactaactaaataa 3231
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0438E12 Length = 146851 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 8302 aagaaaaactaactaaataa 8321
>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463A02 Length = 151041 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 143928 aagaaaaactaactaaataa 143947
>dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001B01 Length = 147585 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 141293 aagaaaaactaactaaataa 141312
>dbj|AP003369.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1102E12 Length = 155692 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 7897 aagaaaaactaactaaataa 7916
>dbj|AP003545.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0613F06 Length = 184289 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 37382 aagaaaaactaactaaataa 37401
>dbj|AP005443.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0011E04 Length = 136767 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 56138 aagaaaaactaactaaataa 56119
>emb|BX936364.6| Zebrafish DNA sequence from clone CH211-247G11 in linkage group 18, complete sequence Length = 146733 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 atggaaaatgaaaattaata 171 |||||||||||||||||||| Sbjct: 45629 atggaaaatgaaaattaata 45648
>gb|AE003464.2| Drosophila melanogaster chromosome 2R, section 71 of 73 of the complete sequence Length = 310958 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 aaatgaaaattaatagaatt 176 |||||||||||||||||||| Sbjct: 50177 aaatgaaaattaatagaatt 50158
>emb|AL049839.3|CNS0000J Human chromosome 14 DNA sequence BAC R-986E7 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 214527 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gaaaaactaactaaataaat 153 |||||||||||||||||||| Sbjct: 181308 gaaaaactaactaaataaat 181289
>dbj|AP002778.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-643C11, complete sequence Length = 160242 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 aaatgaaaattaatagaatt 176 |||||||||||||||||||| Sbjct: 108078 aaatgaaaattaatagaatt 108059
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 14773455 aagaaaaactaactaaataa 14773436 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aagaaaaactaactaaataa 151 |||||||||||||||||||| Sbjct: 14765315 aagaaaaactaactaaataa 14765296
>emb|AL953890.7| Mouse DNA sequence from clone RP23-321B3 on chromosome 2, complete sequence Length = 157722 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 taactaaataaatggaaaat 160 |||||||||||||||||||| Sbjct: 135571 taactaaataaatggaaaat 135590
>gb|AC172110.2| Rhesus Macaque CHR7 BAC CH250-119L7 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 219949 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ttcaatttcattaagaaaaa 139 |||||||||||||||||||| Sbjct: 136235 ttcaatttcattaagaaaaa 136254
>gb|AC153964.3| Mus musculus 10 BAC RP24-399H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173453 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aaaaactaactaaataaatg 154 |||||||||||||||||||| Sbjct: 783 aaaaactaactaaataaatg 802
>emb|AL731695.11| Mouse DNA sequence from clone RP23-188M14 on chromosome X, complete sequence Length = 177098 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 aataatttcaatttcattaa 133 |||||||||||||||||||| Sbjct: 166928 aataatttcaatttcattaa 166947
>emb|AL831794.6| Mouse DNA sequence from clone RP23-114B13 on chromosome 2, complete sequence Length = 223128 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aaaaactaactaaataaatg 154 |||||||||||||||||||| Sbjct: 127423 aaaaactaactaaataaatg 127442
>gb|AC110186.10| Mus musculus chromosome 7, clone RP24-503J9, complete sequence Length = 168058 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 agaaaaactaactaaataaa 152 |||||||||||||||||||| Sbjct: 50384 agaaaaactaactaaataaa 50403
>gb|AC018832.5| Homo sapiens chromosome 3 clone RP11-481O7 map 3p, complete sequence Length = 185496 Score = 40.1 bits (20), Expect = 3.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 taagaaaaactaactaaataaatg 154 ||||||||| |||||||||||||| Sbjct: 47136 taagaaaaaataactaaataaatg 47113 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,755,699 Number of Sequences: 3902068 Number of extensions: 3755699 Number of successful extensions: 109176 Number of sequences better than 10.0: 136 Number of HSP's better than 10.0 without gapping: 143 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108113 Number of HSP's gapped (non-prelim): 1054 length of query: 280 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 258 effective length of database: 17,147,199,772 effective search space: 4423977541176 effective search space used: 4423977541176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
