>ref|NM_191345.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 783

 Score =  168 bits (85), Expect = 1e-38
 Identities = 266/323 (82%), Gaps = 5/323 (1%)
 Strand = Plus / Minus

                                                                       
Query: 221 ttaatctttcacaaaatccctggcatcttcttcatcagactcatccttctgtacagcctg 280
           ||||||||  |||||||||||||| ||||||||||| || ||||| | ||||  ||| ||
Sbjct: 783 ttaatcttctacaaaatccctggcctcttcttcatctgaatcatcttgctgtctagcttg 724

                                                                       
Query: 281 ttcagcatattcgtcaagagatgcaacagggaaaaggtcgccttcccgatctcggtccgc 340
           |||||||||||||||||| |||||| ||||||||| ||| ||||| |||  || ||| ||
Sbjct: 723 ttcagcatattcgtcaagggatgcagcagggaaaatgtccccttcacgacttctgtcagc 664

                                                                       
Query: 341 gatctttggaactgatggcccgctctcctcatccttatttttgttcataaggcgaatcag 400
            ||||||||||| || || ||||||||| |  |   |  |||||||||||||||||  ||
Sbjct: 663 aatctttggaaccgacggtccgctctccccgcc---acctttgttcataaggcgaagaag 607

                                                                       
Query: 401 tgtccttcgctccctctccctagcatatctgatggcctcctctagtgctttgcgctcact 460
           ||| |  | ||||||||||||||||  ||| ||||||||||||||| | |||||||||||
Sbjct: 606 tgtgcgcctctccctctccctagcacctcttatggcctcctctagttccttgcgctcact 547

                                                                       
Query: 461 gtcttcttc-ctcagcatcccttccaacaagctgcttaacagaggtgcagcacttggcac 519
            || | ||| || || ||||||||| ||||||   |||||| | ||||||||||| || |
Sbjct: 546 ctcctgttcactaag-atcccttccgacaagcgctttaacacaagtgcagcacttcgcgc 488

                                  
Query: 520 aaatcccaagctccttggagcaa 542
           |||||||||| ||||||||||||
Sbjct: 487 aaatcccaaggtccttggagcaa 465

>dbj|AK099449.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022F08, full
           insert sequence
          Length = 829

 Score =  168 bits (85), Expect = 1e-38
 Identities = 266/323 (82%), Gaps = 5/323 (1%)
 Strand = Plus / Minus

                                                                       
Query: 221 ttaatctttcacaaaatccctggcatcttcttcatcagactcatccttctgtacagcctg 280
           ||||||||  |||||||||||||| ||||||||||| || ||||| | ||||  ||| ||
Sbjct: 696 ttaatcttctacaaaatccctggcctcttcttcatctgaatcatcttgctgtctagcttg 637

                                                                       
Query: 281 ttcagcatattcgtcaagagatgcaacagggaaaaggtcgccttcccgatctcggtccgc 340
           |||||||||||||||||| |||||| ||||||||| ||| ||||| |||  || ||| ||
Sbjct: 636 ttcagcatattcgtcaagggatgcagcagggaaaatgtccccttcacgacttctgtcagc 577

                                                                       
Query: 341 gatctttggaactgatggcccgctctcctcatccttatttttgttcataaggcgaatcag 400
            ||||||||||| || || ||||||||| |  |   |  |||||||||||||||||  ||
Sbjct: 576 aatctttggaaccgacggtccgctctccccgcc---acctttgttcataaggcgaagaag 520

                                                                       
Query: 401 tgtccttcgctccctctccctagcatatctgatggcctcctctagtgctttgcgctcact 460
           ||| |  | ||||||||||||||||  ||| ||||||||||||||| | |||||||||||
Sbjct: 519 tgtgcgcctctccctctccctagcacctcttatggcctcctctagttccttgcgctcact 460

                                                                       
Query: 461 gtcttcttc-ctcagcatcccttccaacaagctgcttaacagaggtgcagcacttggcac 519
            || | ||| || || ||||||||| ||||||   |||||| | ||||||||||| || |
Sbjct: 459 ctcctgttcactaag-atcccttccgacaagcgctttaacacaagtgcagcacttcgcgc 401

                                  
Query: 520 aaatcccaagctccttggagcaa 542
           |||||||||| ||||||||||||
Sbjct: 400 aaatcccaaggtccttggagcaa 378

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  111 bits (56), Expect = 3e-21
 Identities = 125/148 (84%)
 Strand = Plus / Plus

                                                                            
Query: 221      ttaatctttcacaaaatccctggcatcttcttcatcagactcatccttctgtacagcctg 280
                ||||||||  |||||||||||||| ||||||||||| || ||||| | ||||  ||| ||
Sbjct: 32085110 ttaatcttctacaaaatccctggcctcttcttcatctgaatcatcttgctgtctagcttg 32085169

                                                                            
Query: 281      ttcagcatattcgtcaagagatgcaacagggaaaaggtcgccttcccgatctcggtccgc 340
                |||||||||||||||||| |||||| ||||||||| ||| ||||| |||  || ||| ||
Sbjct: 32085170 ttcagcatattcgtcaagggatgcagcagggaaaatgtccccttcacgacttctgtcagc 32085229

                                            
Query: 341      gatctttggaactgatggcccgctctcc 368
                 ||||||||||| || || |||||||||
Sbjct: 32085230 aatctttggaaccgacggtccgctctcc 32085257



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                                
Query: 495      ttaacagaggtgcagcacttggcacaaatcccaagctccttggagcaa 542
                |||||| | ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 32086603 ttaacacaagtgcagcacttcgcgcaaatcccaaggtccttggagcaa 32086650

>dbj|AP003274.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0512C01
          Length = 176261

 Score =  111 bits (56), Expect = 3e-21
 Identities = 125/148 (84%)
 Strand = Plus / Plus

                                                                          
Query: 221    ttaatctttcacaaaatccctggcatcttcttcatcagactcatccttctgtacagcctg 280
              ||||||||  |||||||||||||| ||||||||||| || ||||| | ||||  ||| ||
Sbjct: 126924 ttaatcttctacaaaatccctggcctcttcttcatctgaatcatcttgctgtctagcttg 126983

                                                                          
Query: 281    ttcagcatattcgtcaagagatgcaacagggaaaaggtcgccttcccgatctcggtccgc 340
              |||||||||||||||||| |||||| ||||||||| ||| ||||| |||  || ||| ||
Sbjct: 126984 ttcagcatattcgtcaagggatgcagcagggaaaatgtccccttcacgacttctgtcagc 127043

                                          
Query: 341    gatctttggaactgatggcccgctctcc 368
               ||||||||||| || || |||||||||
Sbjct: 127044 aatctttggaaccgacggtccgctctcc 127071



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                              
Query: 495    ttaacagaggtgcagcacttggcacaaatcccaagctccttggagcaa 542
              |||||| | ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 128417 ttaacacaagtgcagcacttcgcgcaaatcccaaggtccttggagcaa 128464

>gb|AY110066.1| Zea mays CL46173_1 mRNA sequence
          Length = 629

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 132/163 (80%)
 Strand = Plus / Plus

                                                                       
Query: 380 tttgttcataaggcgaatcagtgtccttcgctccctctccctagcatatctgatggcctc 439
           |||||||||||  ||||  ||||| | ||| |||||||||||||||  |||||  |||||
Sbjct: 303 tttgttcataatacgaagaagtgtacgtcgttccctctccctagcacctctgacagcctc 362

                                                                       
Query: 440 ctctagtgctttgcgctcactgtcttcttcctcagcatcccttccaacaagctgcttaac 499
            |||||||  ||||| ||||| || || || |  ||||||||||| |||||||  |||||
Sbjct: 363 ttctagtgacttgcgttcactttcctcctcattcgcatcccttccgacaagctcgttaac 422

                                                      
Query: 500 agaggtgcagcacttggcacaaatcccaagctccttggagcaa 542
           | | ||||||||||| ||||| || || || ||||||||||||
Sbjct: 423 acatgtgcagcacttagcacatatgccgaggtccttggagcaa 465

>gb|AC104435.3| Homo sapiens chromosome 3 clone RP11-654C22, complete sequence
          Length = 197019

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 520  aaatcccaagctccttggagcaa 542
            |||||||||||||||||||||||
Sbjct: 5054 aaatcccaagctccttggagcaa 5076

>gb|AC097369.2| Homo sapiens chromosome 3 clone RP11-328N12, complete sequence
          Length = 203773

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 520   aaatcccaagctccttggagcaa 542
             |||||||||||||||||||||||
Sbjct: 78096 aaatcccaagctccttggagcaa 78118

>ref|NM_106741.2| Arabidopsis thaliana RNA binding AT1G80930 mRNA, complete cds
          Length = 3256

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 244  catcttcttcatcagactcatc 265
            ||||||||||||||||||||||
Sbjct: 2111 catcttcttcatcagactcatc 2090

>gb|AY139757.1| Arabidopsis thaliana At1g80930/F23A5_23 mRNA, complete cds
          Length = 3057

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 244  catcttcttcatcagactcatc 265
            ||||||||||||||||||||||
Sbjct: 2073 catcttcttcatcagactcatc 2052

>gb|BT004547.1| Arabidopsis thaliana At1g80930/F23A5_23 gene, complete cds
          Length = 2703

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 244  catcttcttcatcagactcatc 265
            ||||||||||||||||||||||
Sbjct: 1900 catcttcttcatcagactcatc 1879

>gb|AC011713.2|F23A5 Arabidopsis thaliana chromosome 1 BAC F23A5 sequence, complete sequence
          Length = 109694

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 244   catcttcttcatcagactcatc 265
             ||||||||||||||||||||||
Sbjct: 90938 catcttcttcatcagactcatc 90959

>gb|AC090208.4| Homo sapiens chromosome 18, clone RP11-660C14, complete sequence
          Length = 200979

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 464    ttcttcctcagcatcccttcc 484
              |||||||||||||||||||||
Sbjct: 170177 ttcttcctcagcatcccttcc 170197

>gb|AC090340.6| Homo sapiens chromosome 18, clone RP11-714M23, complete sequence
          Length = 170969

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 464    ttcttcctcagcatcccttcc 484
              |||||||||||||||||||||
Sbjct: 157616 ttcttcctcagcatcccttcc 157596

>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 448    ctttgcgctcactgtcttcttcctc 472
              ||||||||||||| |||||||||||
Sbjct: 427240 ctttgcgctcactttcttcttcctc 427216

>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 448     ctttgcgctcactgtcttcttcctc 472
               ||||||||||||| |||||||||||
Sbjct: 1832576 ctttgcgctcactttcttcttcctc 1832600

>emb|BX248512.14| Zebrafish DNA sequence from clone CH211-284D12 in linkage group 2,
             complete sequence
          Length = 146757

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 518   acaaatcccaagctccttgga 538
             |||||||||||||||||||||
Sbjct: 12191 acaaatcccaagctccttgga 12211

>gb|AC003971.1|AC003971 Human BAC 367D17 from chromosome 18, complete sequence
          Length = 87978

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 464   ttcttcctcagcatcccttcc 484
             |||||||||||||||||||||
Sbjct: 56730 ttcttcctcagcatcccttcc 56710

>ref|XM_542744.2| PREDICTED: Canis familiaris similar to chemokine-like factor
           superfamily 8 (LOC485625), mRNA
          Length = 529

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 455 ctcactgtcttcttcctcagcatc 478
           ||||||||||||||||||| ||||
Sbjct: 247 ctcactgtcttcttcctcatcatc 270

>emb|CR456631.7| Zebrafish DNA sequence from clone DKEY-101N15 in linkage group 12,
            complete sequence
          Length = 92620

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  aagtctgataaacagaaaca 122
            ||||||||||||||||||||
Sbjct: 3096 aagtctgataaacagaaaca 3077

>gb|AC152751.22| Medicago truncatula clone mth2-18n7, complete sequence
          Length = 117170

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 118    aaacatatatctctgccaaaacaa 141
              |||||||||||||| |||||||||
Sbjct: 115393 aaacatatatctctcccaaaacaa 115370

>gb|BC091815.1| Danio rerio similar to obscurin, cytoskeletal calmodulin and
           titin-interacting RhoGEF, mRNA (cDNA clone
           IMAGE:7144734), partial cds
          Length = 3605

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 240 ctggcatcttcttcatcagactca 263
           ||||||||| ||||||||||||||
Sbjct: 350 ctggcatctccttcatcagactca 327

>emb|AL121946.20|HSDJ357H1 Human DNA sequence from clone RP3-357H1 on chromosome 6p12.1-12.3
              Contains part of the PKHD1 gene for polycystic kidney and
              hepatic disease 1 (autosomal recessive) (TIG multiple
              domains-1, FCYT, ARPKD) and a CpG island, complete sequence
          Length = 138961

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 460    tgtcttcttcctcagcatcc 479
              ||||||||||||||||||||
Sbjct: 126621 tgtcttcttcctcagcatcc 126640

>emb|AJ417718.1|ADU417718 Ancylostoma duodenale complete mitochondrial genome
          Length = 13721

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 182 aaaactaaatatccttttac 201
           ||||||||||||||||||||
Sbjct: 354 aaaactaaatatccttttac 335

>gb|AF507019.1| Caenorhabditis remanei putative protein phosphatase FEM-2 (fem-2)
            mRNA, complete cds
          Length = 1796

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  tcttcttcatcagactcatc 265
            ||||||||||||||||||||
Sbjct: 1445 tcttcttcatcagactcatc 1426

>emb|CR792456.6| Zebrafish DNA sequence from clone RP71-18A8 in linkage group 24,
            complete sequence
          Length = 84852

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 240  ctggcatcttcttcatcagactca 263
            ||||||||| ||||||||||||||
Sbjct: 4462 ctggcatctccttcatcagactca 4485

>gb|AY129465.1| Homo sapiens polycystic kidney and hepatic disease 1 (PKHD1) gene,
              complete cds, alternatively spliced
          Length = 469514

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 460    tgtcttcttcctcagcatcc 479
              ||||||||||||||||||||
Sbjct: 123224 tgtcttcttcctcagcatcc 123205

>ref|XM_688288.1| PREDICTED: Danio rerio similar to obscurin, cytoskeletal calmodulin
            and titin-interacting RhoGEF (LOC564969), mRNA
          Length = 6975

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 240  ctggcatcttcttcatcagactca 263
            ||||||||| ||||||||||||||
Sbjct: 5873 ctggcatctccttcatcagactca 5850

>emb|CR523550.1| Gallus gallus finished cDNA, clone ChEST859j20
          Length = 1409

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 294 tcaagagatgcaacagggaaaagg 317
           |||||||||||||||||| |||||
Sbjct: 884 tcaagagatgcaacagggcaaagg 861

>gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complete sequence
          Length = 176629

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 518    acaaatcccaagctccttgg 537
              ||||||||||||||||||||
Sbjct: 100467 acaaatcccaagctccttgg 100486

>emb|CR386561.1| Gallus gallus finished cDNA, clone ChEST900n1
          Length = 1028

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 294 tcaagagatgcaacagggaaaagg 317
           |||||||||||||||||| |||||
Sbjct: 631 tcaagagatgcaacagggcaaagg 608

>gb|AC016240.23| Homo sapiens chromosome 8, clone RP11-27N21, complete sequence
          Length = 167578

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 474   gcatcccttccaacaagctg 493
             ||||||||||||||||||||
Sbjct: 47214 gcatcccttccaacaagctg 47233

>gb|AC153589.2| Mus musculus 6 BAC RP23-89P21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 226965

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    caagtattggcatttctcca 158
              ||||||||||||||||||||
Sbjct: 113423 caagtattggcatttctcca 113404

>emb|AL844545.7| Mouse DNA sequence from clone RP23-383C3 on chromosome 2, complete
             sequence
          Length = 120913

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    tattaggaaaagaagcttag 64
             ||||||||||||||||||||
Sbjct: 20016 tattaggaaaagaagcttag 19997

>gb|AC147612.5| Mus musculus BAC clone RP23-374K9 from 6, complete sequence
          Length = 190156

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    tgataaacagaaacatatat 127
              ||||||||||||||||||||
Sbjct: 130478 tgataaacagaaacatatat 130459

>gb|AC153910.6| Mus musculus 6 BAC RP23-337M7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214838

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 139    caagtattggcatttctcca 158
              ||||||||||||||||||||
Sbjct: 185100 caagtattggcatttctcca 185081

>emb|AL596246.10| Mouse DNA sequence from clone RP23-186E14 on chromosome 11, complete
              sequence
          Length = 144136

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 466    cttcctcagcatcccttcca 485
              ||||||||||||||||||||
Sbjct: 133937 cttcctcagcatcccttcca 133918

>emb|AL663028.12| Mouse DNA sequence from clone RP23-23J11 on chromosome 2, complete
             sequence
          Length = 110275

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   cttcctcagcatcccttcca 485
             ||||||||||||||||||||
Sbjct: 93677 cttcctcagcatcccttcca 93658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,782,035
Number of Sequences: 3902068
Number of extensions: 5782035
Number of successful extensions: 108789
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108683
Number of HSP's gapped (non-prelim): 106
length of query: 569
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 546
effective length of database: 17,143,297,704
effective search space: 9360240546384
effective search space used: 9360240546384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)