ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACO32_ARATH (Q9LMI7) Putative acyl-coenzyme A oxidase 3.2, perox... 60 4e-09
2ACOX3_ARATH (Q9LLH9) Acyl-coenzyme A oxidase 3, peroxisomal prec... 58 2e-08
3MTPC1_ARATH (Q8L725) Metal tolerance protein C1 (AtMTPc1) 33 0.57
4VE1_HPV1A (P03111) Replication protein E1 (EC 3.6.1.-) (ATP-depe... 29 6.3
5YRMC_CAEEL (Q6BEV5) Hypothetical protein R06F6.12 29 8.2
6YAC5_SCHPO (Q09819) Hypothetical protein C16C9.05 in chromosome I 29 8.2
7NXS7_PSETE (Q9W7J6) Short neurotoxin 7 precursor (Alpha neurotox... 29 8.2

>ACO32_ARATH (Q9LMI7) Putative acyl-coenzyme A oxidase 3.2, peroxisomal|
           precursor (EC 1.3.3.6)
          Length = 675

 Score = 59.7 bits (143), Expect = 4e-09
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = -2

Query: 467 PHALAIVGSFGIPDAFLSPLAFDWIEANALSS 372
           PHALA+V SFGIPDAFLSP+AF+W+EANA SS
Sbjct: 643 PHALALVASFGIPDAFLSPIAFNWVEANAWSS 674



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>ACOX3_ARATH (Q9LLH9) Acyl-coenzyme A oxidase 3, peroxisomal precursor (EC|
           1.3.3.6) (AOX 3) (Medium-chain acyl-CoA oxidase) (AtCX3)
          Length = 675

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 25/32 (78%), Positives = 30/32 (93%)
 Frame = -2

Query: 467 PHALAIVGSFGIPDAFLSPLAFDWIEANALSS 372
           PHALA+V SFGIPD+FLSP+AF+W+EANA SS
Sbjct: 643 PHALALVTSFGIPDSFLSPIAFNWVEANAWSS 674



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>MTPC1_ARATH (Q8L725) Metal tolerance protein C1 (AtMTPc1)|
          Length = 471

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
 Frame = +1

Query: 124 YQLIQFYRRNLEKT---VHEFSMHQIPYFLRRSASSTVHFN----NDYCKPCKRQEATNA 282
           +++ ++ RR +      V E  +H  P FL+ S S+  H +    ++ C+  K  EAT +
Sbjct: 340 HEVGEYVRRQINLNHPEVSEVFIHIDPAFLQFSCSTKDHDSITKESNICQEIKHVEATVS 399

Query: 283 PVFGCPICNSFTFKGLRPH 339
            +F   +    T K + PH
Sbjct: 400 DIFSSQLSEKLTIKRITPH 418



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>VE1_HPV1A (P03111) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 612

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = +2

Query: 17  WLIALCTIQQHIVKKERIYSKQHCIHYLRCEHLLVHISLFSFIGVI*RRQSMNSACIK 190
           W++A+  ++++++   +   + HC+ Y++ EH +   + F F+ V  + Q      IK
Sbjct: 198 WVLAVWGVRENLIDSVKELLQTHCV-YIQLEHAVTEKNRFLFLLVRFKAQKSRETVIK 254



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>YRMC_CAEEL (Q6BEV5) Hypothetical protein R06F6.12|
          Length = 417

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 18/74 (24%)
 Frame = +1

Query: 157 EKTVHEFSMHQIPYFLRRSASSTVH-------FNNDYCKPCKRQEATNAPV--------- 288
           +++ HE+     P  LRR+  ++V         N+D C P  ++    APV         
Sbjct: 315 DRSDHEYQQVAPPVLLRRTDMASVRNAAQKRSANDDLCPPVLKKSYQLAPVVDGPHLVHT 374

Query: 289 --FGCPICNSFTFK 324
             F CPIC+   ++
Sbjct: 375 PNFCCPICDKKVYQ 388



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>YAC5_SCHPO (Q09819) Hypothetical protein C16C9.05 in chromosome I|
          Length = 404

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 235 NNDYCKPCKRQEATNAPVFGCPICNSFTFKGLRPH 339
           N  YC  C +       V+GC +C++F  K  + H
Sbjct: 237 NLAYCGYCSKPSMGACWVYGCQLCDTFYHKNCKEH 271



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>NXS7_PSETE (Q9W7J6) Short neurotoxin 7 precursor (Alpha neurotoxin 7)|
          Length = 79

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 495 VMILCSELRAPCACYCRFFRNP*CFPQST-CFR 400
           V I+C +L     CY R+F    C PQ T C+R
Sbjct: 11  VTIMCLDLGYTLTCYKRYFDTVVCKPQETICYR 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,751,317
Number of Sequences: 219361
Number of extensions: 1323958
Number of successful extensions: 3208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3207
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3638905326
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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