ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd3a23 |
|---|---|
| Clone Library Name | barley_pub |
>DHRS4_PIG (Q8WNV7) Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184)| (NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) (N Length = 260 Score = 36.2 bits (82), Expect = 0.067 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = -2 Query: 547 RNELIERSI-LKRLGSVEDMXXXXXXXXXXXXXFITAETIVVAGGTQSRL 401 R E ++ S+ ++RLG+ ED +IT ET+VV GGT SRL Sbjct: 211 RKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGTASRL 260
>DHRS4_RAT (Q8VID1) Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184)| (NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) (N Length = 260 Score = 35.4 bits (80), Expect = 0.11 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = -2 Query: 556 ETIRNELIERSI-LKRLGSVEDMXXXXXXXXXXXXXFITAETIVVAGGTQSRL 401 E R E+I+ ++ ++RLG ED +I ET+VV GGT SRL Sbjct: 208 EKAREEMIKETMQIRRLGKPEDCVGIVSFLCSEDASYINGETVVVGGGTPSRL 260
>DHRS4_RABIT (Q9GKX2) Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184)| (NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) Length = 260 Score = 33.9 bits (76), Expect = 0.33 Identities = 17/46 (36%), Positives = 25/46 (54%) Frame = -2 Query: 538 LIERSILKRLGSVEDMXXXXXXXXXXXXXFITAETIVVAGGTQSRL 401 +I++ ++RLG E+ +IT ET+VVAGG SRL Sbjct: 215 IIQKLRIRRLGKPEECAGIVSFLCSEDASYITGETVVVAGGAPSRL 260
>DHRS4_PONPY (Q5RCF8) Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184)| (NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) Length = 260 Score = 33.9 bits (76), Expect = 0.33 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = -2 Query: 520 LKRLGSVEDMXXXXXXXXXXXXXFITAETIVVAGGTQSRL 401 ++RLG ED +IT ET+VV GGT SRL Sbjct: 221 IRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGGTPSRL 260
>DHRS4_MOUSE (Q99LB2) Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184)| (NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) Length = 260 Score = 33.9 bits (76), Expect = 0.33 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -2 Query: 556 ETIRNELIERSI-LKRLGSVEDMXXXXXXXXXXXXXFITAETIVVAGGTQSRL 401 E R + I+ ++ ++RLG ED +I ET+VV GGT SRL Sbjct: 208 EKAREDFIKEAMQIRRLGKPEDCAGIVSFLCSEDASYINGETVVVGGGTPSRL 260
>DHRS4_HUMAN (Q9BTZ2) Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184)| (NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) Length = 260 Score = 33.9 bits (76), Expect = 0.33 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = -2 Query: 520 LKRLGSVEDMXXXXXXXXXXXXXFITAETIVVAGGTQSRL 401 ++RLG ED +IT ET+VV GGT SRL Sbjct: 221 IRRLGEPEDCAGIVSFLCSEDASYITGETVVVGGGTPSRL 260
>DHRS4_BOVIN (Q8SPU8) Dehydrogenase/reductase SDR family member 4 (EC 1.1.1.184)| (NADPH-dependent carbonyl reductase/NADP-retinol dehydrogenase) (CR) (PHCR) (Peroxisomal short-chain alcohol dehydrogenase) (NADPH-dependent retinol dehydrogenase/reductase) Length = 260 Score = 30.8 bits (68), Expect = 2.8 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 547 RNELIERSI-LKRLGSVEDMXXXXXXXXXXXXXFITAETIVVAGGTQSRL 401 R E I+ + +KR+G E+ +IT ET+VVAGG+ S L Sbjct: 211 RQESIKATFQIKRIGKPEECAGIVSFLCSEDASYITGETVVVAGGSLSHL 260
>SPA4L_HUMAN (Q8TC36) Sperm-associated antigen 4-like protein (Testis and| spermatogenesis-related gene 4 protein) Length = 379 Score = 30.4 bits (67), Expect = 3.7 Identities = 14/31 (45%), Positives = 22/31 (70%) Frame = +2 Query: 272 SLLSDVAKHNPLPKKTSKLHKNASRLLQDRS 364 +LL DVA HNP P++ ++ +N SR+ +D S Sbjct: 13 ALLEDVA-HNPRPRRIAQRGRNTSRMAEDTS 42
>YN35_YEAST (P48564) Hypothetical 61.2 kDa protein in CLA4-PUS4 intergenic| region Length = 524 Score = 30.4 bits (67), Expect = 3.7 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 4/81 (4%) Frame = +2 Query: 77 NNRSQT*KELLRITSSIITSTDYRRKKH*RTKILFASDR----GMQRRPGDAKKFSSKFI 244 N+RS+ L + + STDY K T+ LFA R G P DA+K F Sbjct: 97 NSRSKISGSNLHLLVPRVASTDYISNKEVHTEGLFAGYRPLFLGNSGFPSDARK-GKNFH 155 Query: 245 QLSDELPKHSLLSDVAKHNPL 307 +L D LP ++ K L Sbjct: 156 ELDDVLPNIQVVDASEKDGKL 176
>OB99B_DROME (Q9VAI6) General odorant-binding protein 99b precursor| Length = 149 Score = 29.6 bits (65), Expect = 6.3 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 112 DHQQHHHQYRLQTQKTLKN*DFICFRQRHA 201 DH HHH Y ++T + L N C + HA Sbjct: 17 DHHHHHHDYVVKTHEDLTNYRTQCVEKVHA 46
>SSDH_PANTR (Q6A2H0) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 29.3 bits (64), Expect = 8.2 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 347 VWMRSCEASKFSSAM-GCALRRHSGGSASA 261 +W+RSC A + S GC LR +GG A Sbjct: 5 IWLRSCGARRLGSTFPGCRLRPRAGGLVPA 34
>SSDH_HUMAN (P51649) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 29.3 bits (64), Expect = 8.2 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 347 VWMRSCEASKFSSAM-GCALRRHSGGSASA 261 +W+RSC A + S GC LR +GG A Sbjct: 5 IWLRSCGARRLGSTFPGCRLRPRAGGLVPA 34
>SSDH_GORGO (Q6A2H1) Succinate semialdehyde dehydrogenase, mitochondrial| precursor (EC 1.2.1.24) (NAD(+)-dependent succinic semialdehyde dehydrogenase) Length = 535 Score = 29.3 bits (64), Expect = 8.2 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -1 Query: 347 VWMRSCEASKFSSAM-GCALRRHSGGSASA 261 +W+RSC A + S GC LR +GG A Sbjct: 5 IWLRSCGARRLGSTFPGCRLRPRAGGLVPA 34
>FA35A_HUMAN (Q86V20) Protein FAM35A| Length = 835 Score = 29.3 bits (64), Expect = 8.2 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +2 Query: 167 TKILFASDRGMQRRPGDAKKFSSKFIQLSDELPKHSLLSDVAKHNPLPKKTSKLHKNA 340 ++I SD+G++ G + FSS+ DELP + + ++ L + + HK+A Sbjct: 323 SRIHINSDKGLEEHTGSQELFSSE-----DELPPNEIRIELCSSGILCSQLNTFHKSA 375 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,806,343 Number of Sequences: 219361 Number of extensions: 1220589 Number of successful extensions: 3277 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 3134 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3268 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
