ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3a23 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK109426.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E02, full insert sequence Length = 1013 Score = 198 bits (100), Expect = 1e-47 Identities = 142/156 (91%) Strand = Plus / Minus Query: 414 gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 473 |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | Sbjct: 833 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 774 Query: 474 aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 533 ||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||| || Sbjct: 773 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 714 Query: 534 atgagctcatttctaatggtctcattagttgtgagg 569 || ||||||||| ||||||| ||||||||||||||| Sbjct: 713 ataagctcatttttaatggtgtcattagttgtgagg 678
>dbj|AK073545.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041K02, full insert sequence Length = 1127 Score = 198 bits (100), Expect = 1e-47 Identities = 142/156 (91%) Strand = Plus / Minus Query: 414 gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 473 |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | Sbjct: 925 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 866 Query: 474 aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 533 ||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||| || Sbjct: 865 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 806 Query: 534 atgagctcatttctaatggtctcattagttgtgagg 569 || ||||||||| ||||||| ||||||||||||||| Sbjct: 805 ataagctcatttttaatggtgtcattagttgtgagg 770
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 167 bits (84), Expect = 5e-38 Identities = 120/132 (90%) Strand = Plus / Plus Query: 414 gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 473 |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | Sbjct: 2459360 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 2459419 Query: 474 aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 533 ||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||| || Sbjct: 2459420 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 2459479 Query: 534 atgagctcattt 545 || ||||||||| Sbjct: 2459480 ataagctcattt 2459491
>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0095O23 Length = 159792 Score = 167 bits (84), Expect = 5e-38 Identities = 120/132 (90%) Strand = Plus / Plus Query: 414 gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 473 |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | Sbjct: 137770 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 137829 Query: 474 aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 533 ||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||| || Sbjct: 137830 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 137889 Query: 534 atgagctcattt 545 || ||||||||| Sbjct: 137890 ataagctcattt 137901
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0406E03 Length = 201069 Score = 167 bits (84), Expect = 5e-38 Identities = 120/132 (90%) Strand = Plus / Plus Query: 414 gttcctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccagg 473 |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | Sbjct: 45950 gttcctccagcaacaacaatagtttcagctgtaatgaatgatgcatcgtctgatgccaag 46009 Query: 474 aaagcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcg 533 ||||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||| || Sbjct: 46010 aaagctgcggctgcagccatgtcttccacagtacccaatctcttaagtgtgctcctgtca 46069 Query: 534 atgagctcattt 545 || ||||||||| Sbjct: 46070 ataagctcattt 46081
>gb|AY105662.1| Zea mays PCO112379 mRNA sequence Length = 1142 Score = 117 bits (59), Expect = 4e-23 Identities = 122/143 (85%) Strand = Plus / Minus Query: 417 cctccagcaacaacaattgtttcagctgtaatgaaggatgcatcgtcggatgccaggaaa 476 ||||||||||||||||| |||||||| |||||| | ||||| ||||| || ||||| ||| Sbjct: 943 cctccagcaacaacaatggtttcagccgtaatgtatgatgcgtcgtcagacgccagaaaa 884 Query: 477 gcggcggctgaagccatgtcttccacgctacccaatctcttaagtatgctcctctcgatg 536 || || || | ||||||||||||||| |||||||||||||||| || |||||||| | Sbjct: 883 gccgcagccgcagccatgtcttccacagtacccaatctcttaagcttggtcctctcgtta 824 Query: 537 agctcatttctaatggtctcatt 559 ||||| || |||||||||||||| Sbjct: 823 agctctttcctaatggtctcatt 801
>emb|AL627070.16| Mouse DNA sequence from clone RP23-353E13 on chromosome 11 Contains a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, wo novel genes and a CpG island, complete sequence Length = 210813 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agaaagcaacactaaaagaaa 78 ||||||||||||||||||||| Sbjct: 97437 agaaagcaacactaaaagaaa 97417
>gb|AC026384.19|AC026384 Mus musculus 11 BAC RP23-390D17 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 177428 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 agaaagcaacactaaaagaaa 78 ||||||||||||||||||||| Sbjct: 15093 agaaagcaacactaaaagaaa 15073
>gb|AC019057.8| Homo sapiens BAC clone RP11-121A1 from 2, complete sequence Length = 186896 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 aaaacactgaagaactaagat 174 ||||||||||||||||||||| Sbjct: 69414 aaaacactgaagaactaagat 69434
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Minus Query: 275 ctcctgagtgacgtcgcaaagcacaacccattg 307 |||||||||| ||||||| || ||||||||||| Sbjct: 176060 ctcctgagtggcgtcgcagagaacaacccattg 176028
>emb|AL844904.4| Mouse DNA sequence from clone RP23-315J3 on chromosome X, complete sequence Length = 186544 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 aacactgaagaactaagattt 176 ||||||||||||||||||||| Sbjct: 8870 aacactgaagaactaagattt 8890
>ref|NM_104382.3| Arabidopsis thaliana unknown protein AT1G55080 mRNA, complete cds Length = 878 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ttcctccagcaacaacaatt 434 |||||||||||||||||||| Sbjct: 140 ttcctccagcaacaacaatt 159
>gb|AC165157.4| Mus musculus BAC clone RP23-267A24 from chromosome 12, complete sequence Length = 205444 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 cagcaacaacaattgtttca 440 |||||||||||||||||||| Sbjct: 123713 cagcaacaacaattgtttca 123732
>gb|AC117724.14| Mus musculus chromosome 5, clone RP24-347F19, complete sequence Length = 183083 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 agacagaggcatgcaaagac 206 |||||||||||||||||||| Sbjct: 31856 agacagaggcatgcaaagac 31875
>gb|BC070849.1| Xenopus laevis hypothetical protein MGC84587, mRNA (cDNA clone MGC:84587 IMAGE:6639941), complete cds Length = 2043 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 cagaggcatgcaaagacgtccagg 213 ||||||||||||||||| |||||| Sbjct: 280 cagaggcatgcaaagacttccagg 303
>gb|AC119954.12| Mus musculus chromosome 1, clone RP24-450P2, complete sequence Length = 179212 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 caccagcagcatcatcacca 134 |||||||||||||||||||| Sbjct: 71603 caccagcagcatcatcacca 71622
>gb|AC092249.3| Canis familiaris clone RP81-256F7, complete sequence Length = 42879 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 59 gaaagcaacactaaaagaaacaacaggt 86 |||||||||| |||||||||||||||| Sbjct: 12892 gaaagcaacaacaaaagaaacaacaggt 12865
>gb|AY355786.1| Canis familiaris isolate cOR8S6P olfactory receptor family 8 subfamily S pseudogene, partial sequence Length = 852 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gatcaccagcagcatcatca 131 |||||||||||||||||||| Sbjct: 115 gatcaccagcagcatcatca 96
>gb|AC160529.6| Mus musculus chromosome 1, clone RP24-141F19, complete sequence Length = 167687 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 caccagcagcatcatcacca 134 |||||||||||||||||||| Sbjct: 161420 caccagcagcatcatcacca 161401
>ref|XM_846324.1| PREDICTED: Canis familiaris olfactory receptor family 8 subfamily S (cOR8S16), mRNA Length = 1167 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gatcaccagcagcatcatca 131 |||||||||||||||||||| Sbjct: 381 gatcaccagcagcatcatca 362
>ref|XM_751123.1| Ustilago maydis 521 hypothetical protein (UM00069.1) partial mRNA Length = 3267 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 tgccaggaaagcggcggctgaagc 490 ||||||||||||||| |||||||| Sbjct: 1792 tgccaggaaagcggcagctgaagc 1769
>gb|AY082333.1| Delftia acidovorans xanthine dehydrogenase small subunit (xdhA), xanthine dehydrogenase large subunit (xdhB), putative xanthine/uracil permease (xprA), putative sulfonate binding protein (ssuA), putative sulfonate transporter permease component (ssuC), and putative sulfonate transporter ATP-binding subunit (ssuB) genes, complete cds Length = 9263 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 467 tgccaggaaagcggcggctgaagccatg 494 ||||| |||||| ||||||||||||||| Sbjct: 8297 tgccatgaaagctgcggctgaagccatg 8270
>gb|AC165355.3| Mus musculus BAC clone RP23-129P10 from chromosome 6, complete sequence Length = 199100 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 atctatagtcttgattgtgt 415 |||||||||||||||||||| Sbjct: 64524 atctatagtcttgattgtgt 64543
>gb|AC109214.6| Mus musculus chromosome 10, clone RP23-352E22, complete sequence Length = 175569 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 actaagattttatttgcttc 186 |||||||||||||||||||| Sbjct: 69891 actaagattttatttgcttc 69910
>gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, complete sequence Length = 243323 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 agacagaggcatgcaaagac 206 |||||||||||||||||||| Sbjct: 207797 agacagaggcatgcaaagac 207816
>gb|BC091056.1| Xenopus tropicalis MGC108315 protein, mRNA (cDNA clone MGC:108315 IMAGE:7022023), complete cds Length = 2276 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 cagaggcatgcaaagacgtccagg 213 ||||||||||||||||| |||||| Sbjct: 214 cagaggcatgcaaagacttccagg 237
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 accagcagcatcatcaccag 135 |||||||||||||||||||| Sbjct: 2994317 accagcagcatcatcaccag 2994298
>gb|AF170802.6| Homo sapiens chromosome 8 clone GS1-13p3 map cen, complete sequence Length = 89408 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 actgaagaactaagatttta 178 |||||||||||||||||||| Sbjct: 66798 actgaagaactaagatttta 66817
>ref|NM_001030433.1| Xenopus tropicalis MGC108315 protein (MGC108315), mRNA Length = 2276 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 cagaggcatgcaaagacgtccagg 213 ||||||||||||||||| |||||| Sbjct: 214 cagaggcatgcaaagacttccagg 237
>ref|NM_203664.1| Xenopus tropicalis clathrin, light polypeptide (Lca) (clta), mRNA Length = 1072 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 tgccaggaaagcggcggctg 486 |||||||||||||||||||| Sbjct: 213 tgccaggaaagcggcggctg 194
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 actgaagaactaagatttta 178 |||||||||||||||||||| Sbjct: 29116 actgaagaactaagatttta 29135
>gb|AC103758.14| Homo sapiens chromosome 8, clone CTD-3135A9, complete sequence Length = 235357 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tgcttcagacagaggcatgc 200 |||||||||||||||||||| Sbjct: 107287 tgcttcagacagaggcatgc 107306
>gb|AC149518.2| Xenopus tropicalis clone CH216-59A18, complete sequence Length = 210140 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 cagaggcatgcaaagacgtccagg 213 ||||||||||||||||| |||||| Sbjct: 195142 cagaggcatgcaaagacttccagg 195119
>gb|AC068413.11| Homo sapiens chromosome 8, clone RP11-273I9, complete sequence Length = 157865 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 acaattgtttcagctgtaat 448 |||||||||||||||||||| Sbjct: 87186 acaattgtttcagctgtaat 87205
>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete Sequence, complete sequence Length = 194881 Score = 40.1 bits (20), Expect = 7.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 113 atcaccagcagcatcatcaccagtacag 140 |||||||||| |||||||||||| |||| Sbjct: 68414 atcaccagcatcatcatcaccagcacag 68441
>gb|AF461354.1| Drosophila ercepeae hunchback (hb) gene, partial cds Length = 483 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 caccagcagcatcatcacca 134 |||||||||||||||||||| Sbjct: 85 caccagcagcatcatcacca 104
>gb|AY093241.1| Arabidopsis thaliana unknown protein (At1g55080) mRNA, complete cds Length = 874 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ttcctccagcaacaacaatt 434 |||||||||||||||||||| Sbjct: 137 ttcctccagcaacaacaatt 156
>gb|BT006281.1| Arabidopsis thaliana At1g55080 mRNA, complete cds Length = 735 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 ttcctccagcaacaacaatt 434 |||||||||||||||||||| Sbjct: 100 ttcctccagcaacaacaatt 119
>ref|NG_004965.1| Canis familiaris cOR8S6P olfactory receptor family 8 subfamily S pseudogene (cOR8S6P) on chromosome 27 Length = 852 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 gatcaccagcagcatcatca 131 |||||||||||||||||||| Sbjct: 115 gatcaccagcagcatcatca 96
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 actgaagaactaagatttta 178 |||||||||||||||||||| Sbjct: 33978219 actgaagaactaagatttta 33978238
>gb|AC073944.6|AC073944 Arabidopsis thaliana chromosome 1 BAC T7N22 genomic sequence, complete sequence Length = 44540 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 ttcctccagcaacaacaatt 434 |||||||||||||||||||| Sbjct: 14013 ttcctccagcaacaacaatt 13994
>gb|AC107885.5| Homo sapiens chromosome 8, clone CTD-2552G2, complete sequence Length = 163298 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 actgaagaactaagatttta 178 |||||||||||||||||||| Sbjct: 103536 actgaagaactaagatttta 103555
>gb|AC107650.19| Mus musculus chromosome 6, clone RP23-133I9, complete sequence Length = 225883 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 atctatagtcttgattgtgt 415 |||||||||||||||||||| Sbjct: 53377 atctatagtcttgattgtgt 53358
>emb|CR760072.2| Xenopus tropicalis finished cDNA, clone TNeu044c07 Length = 945 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 tgccaggaaagcggcggctg 486 |||||||||||||||||||| Sbjct: 100 tgccaggaaagcggcggctg 81
>gb|BC084329.1| Xenopus laevis hypothetical LOC495134, mRNA (cDNA clone MGC:83943 IMAGE:6861944), complete cds Length = 1920 Score = 40.1 bits (20), Expect = 7.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 cagaggcatgcaaagacgtccagg 213 ||||||||||||||||| |||||| Sbjct: 241 cagaggcatgcaaagacttccagg 264
>gb|BC061272.1| Xenopus tropicalis clathrin, light polypeptide (Lca), mRNA (cDNA clone MGC:75712 IMAGE:5380749), complete cds Length = 1072 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 467 tgccaggaaagcggcggctg 486 |||||||||||||||||||| Sbjct: 213 tgccaggaaagcggcggctg 194 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,123,539 Number of Sequences: 3902068 Number of extensions: 5123539 Number of successful extensions: 131634 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131459 Number of HSP's gapped (non-prelim): 175 length of query: 569 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 546 effective length of database: 17,143,297,704 effective search space: 9360240546384 effective search space used: 9360240546384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
