ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2l22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC071110.1| Xenopus laevis MGC81280 protein, mRNA (cDNA clone MGC:81280 IMAGE:6631808), complete cds Length = 1877 Score = 763 bits (385), Expect = 0.0 Identities = 395/397 (99%), Gaps = 1/397 (0%) Strand = Plus / Plus Query: 187 cagacctggcactgcgctgtctcatgcagagtaactttcctgccaccgctgaacctttgc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 940 cagacctggcactgcgctgtctcatgcagagtaactttcctgccaccgctgaacctttgc 999 Query: 247 caaaaaagacccaggacagatcatttgcagcaggaaacagtaaaaaatgaaggcaaggaa 306 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1000 caaaaa-gacccaggacagatcatttgcagcaggaaacggtaaaaaatgaaggcaaggaa 1058 Query: 307 gcatatccagttagttctgcctgtgcgggaggcattgtcattgctctttgttgtcaccat 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1059 gcatatccagttagttctgcctgtgcgggaggcattgtcattgctctttgttgtcaccat 1118 Query: 367 cgctgtgactggcatcactatgtaggcagagagttcttccaaagtctaggactggatcag 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1119 cgctgtgactggcatcactatgtaggcagagagttcttccaaagtctaggactggatcag 1178 Query: 427 agggaattcaacctttttcagcgcatgtccagttgggctacctgtggtatgaggaaactg 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1179 agggaattcaacctttttcagcgcatgtccagttgggctacctgtggtatgaggaaactg 1238 Query: 487 ccggccaaagccatccagtctgatgaacagatggagtcagaggaacatgatgcagagcaa 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1239 ccggccaaagccatccagtctgatgaacagatggagtcagaggaacatgatgcagagcaa 1298 Query: 547 cagaacctagactgtcattcagagacagttgaagggt 583 ||||||||||||||||||||||||||||||||||||| Sbjct: 1299 cagaacctagactgtcattcagagacagttgaagggt 1335
>emb|CT025436.2| Xenopus tropicalis finished cDNA, clone TGas123e04 Length = 2240 Score = 367 bits (185), Expect = 3e-98 Identities = 345/394 (87%), Gaps = 12/394 (3%) Strand = Plus / Plus Query: 187 cagacctggcactgcgctgtctcatgcagagtaactttcctgccaccgctgaacctttgc 246 |||||||||||||||||||||| ||||||||||||| || ||||| | |||||||| | Sbjct: 928 cagacctggcactgcgctgtcttatgcagagtaactctcttgccaatggagaaccttttc 987 Query: 247 caaaaaagacccaggacagat-catttgcagcaggaaacagtaaaaaatgaaggcaagga 305 ||||||| |||||||||||| | |||| |||||| |||||| ||||||||| || | | Sbjct: 988 caaaaaa-acccaggacagacacctttg-agcagggaacagtgaaaaatgaatgcgacaa 1045 Query: 306 agcatatccagttagttctgcctgtgcgggaggcattgtcattgctctttgttgtcacca 365 |||| |||||| | ||| |||||| |||||| |||| |||||||||||| || || || Sbjct: 1046 agcaaatccagcttattccacctgtgtgggaggtattgccattgctctttgctgccatca 1105 Query: 366 tcgctgtgactggcatcactatgtaggcagagagttcttccaaagtctaggactggatca 425 |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct: 1106 tcgctgtgactggcatcactatgtaggcagagagttcttccaaagtctgggattggatca 1165 Query: 426 gagggaattcaacctttttcagcgcatgtccagttgggctacctgtggtatgaggaaact 485 ||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||| Sbjct: 1166 gagggaattcagcctttttcaacgcatgtccagttgggctacctgtggcatgag---act 1222 Query: 486 gccggccaaagccatccagtctgatgaacagatggagtcagaggaacatgatgcagagca 545 ||||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1223 gccggccaaggctattcagtctgatgaacagatggagtcagaggagcatgatgcagagca 1282 Query: 546 acagaacctagactgtcattcagagacagttgaa 579 ||||| ||||||||||||||||||||||| Sbjct: 1283 acaga------actgtcattcagagacagttgaa 1310
>emb|BX649610.5| Zebrafish DNA sequence from clone CH211-170D11 in linkage group 18, complete sequence Length = 150831 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 21 aagaaatatttttacagaaaaaa 43 ||||||||||||||||||||||| Sbjct: 59003 aagaaatatttttacagaaaaaa 59025
>gb|BC103656.1| Rattus norvegicus similar to hypothetical protein FLJ10287, mRNA (cDNA clone IMAGE:7319210), complete cds Length = 1764 Score = 44.1 bits (22), Expect = 0.54 Identities = 37/42 (88%) Strand = Plus / Plus Query: 337 ggcattgtcattgctctttgttgtcaccatcgctgtgactgg 378 |||||||||||||| || ||||||||||| | ||||||||| Sbjct: 942 ggcattgtcattgcgctctgttgtcaccacaggtgtgactgg 983
>gb|AC131602.4| Rattus norvegicus 2 BAC CH230-33J10 (Children's Hospital Oakland Research Institute) complete sequence Length = 216155 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 18 aacaagaaatatttttacagaaaaaa 43 ||||| |||||||||||||||||||| Sbjct: 183414 aacaataaatatttttacagaaaaaa 183439
>gb|AC138069.3| Homo sapiens chromosome 3 clone RP13-546I2, complete sequence Length = 177334 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 30 ttttacagaaaaaatgaccagaagca 55 |||||||||||||| ||||||||||| Sbjct: 113762 ttttacagaaaaaaagaccagaagca 113787
>gb|AC133517.6| Mus musculus BAC clone RP23-136I9 from chromosome 14, complete sequence Length = 196833 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 463 gctacctgtggtatgaggaaa 483 ||||||||||||||||||||| Sbjct: 162275 gctacctgtggtatgaggaaa 162255
>gb|AC145760.3| Microcebus murinus clone CH257-514K9, complete sequence Length = 271789 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 atttttaaacaagaaatattt 31 ||||||||||||||||||||| Sbjct: 223756 atttttaaacaagaaatattt 223736
>gb|AC161453.6| Mus musculus BAC clone RP23-403B2 from chromosome 14, complete sequence Length = 205636 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gctacctgtggtatgaggaaa 483 ||||||||||||||||||||| Sbjct: 184335 gctacctgtggtatgaggaaa 184355 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gctacctgtggtatgaggaaa 483 ||||||||||||||||||||| Sbjct: 58329 gctacctgtggtatgaggaaa 58349
>gb|AC146376.4| Pan troglodytes BAC clone RP43-76K24 from 7, complete sequence Length = 173021 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 aaaaaatgaccagaagcagca 58 ||||||||||||||||||||| Sbjct: 66543 aaaaaatgaccagaagcagca 66563
>gb|AC144808.2| Mus musculus BAC clone RP24-434O1 from chromosome 5, complete sequence Length = 152463 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 495 agccatccagtctgatgaacagatg 519 |||| |||||||||||||||||||| Sbjct: 114173 agccttccagtctgatgaacagatg 114149
>gb|AC123543.3| Lemur catta clone LB2-212N12, complete sequence Length = 203201 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 atttttaaacaagaaatattt 31 ||||||||||||||||||||| Sbjct: 11469 atttttaaacaagaaatattt 11449
>gb|AC124293.6| Homo sapiens chromosome 8, clone RP11-86O15, complete sequence Length = 111669 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 aatatttttacagaaaaaatg 45 ||||||||||||||||||||| Sbjct: 21898 aatatttttacagaaaaaatg 21878
>gb|AC146221.3| Pan troglodytes BAC clone RP43-33B24 from 7, complete sequence Length = 127675 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 aaaaaatgaccagaagcagca 58 ||||||||||||||||||||| Sbjct: 66542 aaaaaatgaccagaagcagca 66562
>gb|AC166080.2| Mus musculus BAC clone RP23-3N5 from chromosome 14, complete sequence Length = 198220 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gctacctgtggtatgaggaaa 483 ||||||||||||||||||||| Sbjct: 77476 gctacctgtggtatgaggaaa 77496
>gb|AC161275.6| Mus musculus BAC clone RP23-11E12 from chromosome 14, complete sequence Length = 237179 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gctacctgtggtatgaggaaa 483 ||||||||||||||||||||| Sbjct: 154120 gctacctgtggtatgaggaaa 154140
>emb|AL359928.11| Human DNA sequence from clone RP11-80D19 on chromosome 1, complete sequence Length = 63855 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 245 gccaaaaaagacccaggacag 265 ||||||||||||||||||||| Sbjct: 31999 gccaaaaaagacccaggacag 32019
>gb|AC127025.7| Homo sapiens chromosome 17, clone CTD-2646J6, complete sequence Length = 141061 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 aaatatttttacagaaaaaat 44 ||||||||||||||||||||| Sbjct: 113310 aaatatttttacagaaaaaat 113330
>gb|AC011131.6| Homo sapiens chromosome 8, clone RP11-351E7, complete sequence Length = 178705 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 aatatttttacagaaaaaatg 45 ||||||||||||||||||||| Sbjct: 18474 aatatttttacagaaaaaatg 18494
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 atttttaaacaagaaatattt 31 ||||||||||||||||||||| Sbjct: 1016812 atttttaaacaagaaatattt 1016792
>gb|AC116407.18| Homo sapiens chromosome 17, clone CTD-2095E4, complete sequence Length = 104176 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 aaatatttttacagaaaaaat 44 ||||||||||||||||||||| Sbjct: 95858 aaatatttttacagaaaaaat 95838
>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold Length = 1570569 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 atttttaaacaagaaatattt 31 ||||||||||||||||||||| Sbjct: 1094476 atttttaaacaagaaatattt 1094456
>gb|AC011003.7|AC011003 Homo sapiens chromosome 8 clone RP11-86O15, complete sequence Length = 189042 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 aatatttttacagaaaaaatg 45 ||||||||||||||||||||| Sbjct: 167145 aatatttttacagaaaaaatg 167165
>gb|AC016778.3|AC016778 Homo sapiens BAC clone CTD-3055C21 from 7p15.1-p13, complete sequence Length = 140100 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 38 aaaaaatgaccagaagcagca 58 ||||||||||||||||||||| Sbjct: 102847 aaaaaatgaccagaagcagca 102867
>gb|AC090616.12| Homo sapiens chromosome 17, clone RP11-640N20, complete sequence Length = 192070 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 24 aaatatttttacagaaaaaat 44 ||||||||||||||||||||| Sbjct: 189362 aaatatttttacagaaaaaat 189382
>gb|AC007652.1|AC007652 Homo sapiens clone RP11-23B6 from 7p14-15, complete sequence Length = 195981 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aaaaaatgaccagaagcagca 58 ||||||||||||||||||||| Sbjct: 50149 aaaaaatgaccagaagcagca 50129
>emb|BX293568.7| Zebrafish DNA sequence from clone CH211-215F13 in linkage group 20, complete sequence Length = 221849 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 11 atttttaaacaagaaatatttttacagaa 39 |||||||||||| ||||||||| |||||| Sbjct: 70061 atttttaaacaaaaaatattttcacagaa 70089
>gb|AC134253.4| Mus musculus BAC clone RP23-473B17 from 14, complete sequence Length = 200426 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gctacctgtggtatgaggaaa 483 ||||||||||||||||||||| Sbjct: 132699 gctacctgtggtatgaggaaa 132719
>emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chromosome 14, complete sequence Length = 184551 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 363 ccatcgctgtgactggcatca 383 ||||||||||||||||||||| Sbjct: 129180 ccatcgctgtgactggcatca 129160
>gb|AC140256.3| Mus musculus BAC clone RP23-299A24 from 14, complete sequence Length = 197168 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gctacctgtggtatgaggaaa 483 ||||||||||||||||||||| Sbjct: 62099 gctacctgtggtatgaggaaa 62119
>gb|AC134455.3| Mus musculus BAC clone RP23-294B15 from 14, complete sequence Length = 186427 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gctacctgtggtatgaggaaa 483 ||||||||||||||||||||| Sbjct: 75464 gctacctgtggtatgaggaaa 75484
>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold Length = 1595145 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 atttttaaacaagaaatattt 31 ||||||||||||||||||||| Sbjct: 1098212 atttttaaacaagaaatattt 1098192
>gb|AC170810.2| Mus musculus BAC clone RP23-273L20 from chromosome 14, complete sequence Length = 193636 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gctacctgtggtatgaggaaa 483 ||||||||||||||||||||| Sbjct: 125075 gctacctgtggtatgaggaaa 125095
>gb|AC166344.4| Mus musculus BAC clone RP24-63B17 from chromosome 14, complete sequence Length = 224882 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 463 gctacctgtggtatgaggaaa 483 ||||||||||||||||||||| Sbjct: 139709 gctacctgtggtatgaggaaa 139729
>ref|XM_467220.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1613 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aaatgaaggcaaggaagcat 310 |||||||||||||||||||| Sbjct: 1079 aaatgaaggcaaggaagcat 1060
>gb|AC167185.4| Mus musculus chromosome 3, clone RP23-355G8, complete sequence Length = 213731 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ttttaaacaagaaatatttt 32 |||||||||||||||||||| Sbjct: 82046 ttttaaacaagaaatatttt 82065
>gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072P10, complete sequence Length = 147540 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 ttcagagacagttgaagggt 583 |||||||||||||||||||| Sbjct: 68514 ttcagagacagttgaagggt 68533
>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05, complete sequence Length = 148785 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 ttcagagacagttgaagggt 583 |||||||||||||||||||| Sbjct: 118430 ttcagagacagttgaagggt 118449
>gb|AC107747.8| Mus musculus chromosome 15, clone RP23-303J2, complete sequence Length = 199506 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 tcactcttcctggatagtaa 126 |||||||||||||||||||| Sbjct: 83697 tcactcttcctggatagtaa 83678
>ref|XM_422313.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ10287 (LOC424470), mRNA Length = 1520 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 385 tatgtaggcagagagttctt 404 |||||||||||||||||||| Sbjct: 1134 tatgtaggcagagagttctt 1153
>gb|AF399931.1| Homo sapiens P-glycoprotein (ABCB1) mRNA, complete cds Length = 2499 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 ctgatgaacagatggagtca 525 |||||||||||||||||||| Sbjct: 608 ctgatgaacagatggagtca 627
>gb|AY090613.1| Homo sapiens P-glycoprotein mRNA, complete cds Length = 2906 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 ctgatgaacagatggagtca 525 |||||||||||||||||||| Sbjct: 1015 ctgatgaacagatggagtca 1034
>gb|AC103609.6| Mus musculus chromosome 3, clone RP23-359D10, complete sequence Length = 182664 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ttttaaacaagaaatatttt 32 |||||||||||||||||||| Sbjct: 177984 ttttaaacaagaaatatttt 178003
>gb|AC125325.4| Mus musculus BAC clone RP23-296K22 from chromosome 9, complete sequence Length = 156124 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 accagaagtcacttgtaatt 156 |||||||||||||||||||| Sbjct: 107957 accagaagtcacttgtaatt 107938
>gb|AY234788.1| Homo sapiens P-glycoprotein ABCB5 mRNA, complete cds Length = 2906 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 ctgatgaacagatggagtca 525 |||||||||||||||||||| Sbjct: 1015 ctgatgaacagatggagtca 1034
>gb|AC096785.29| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence Length = 201304 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aatatttttacagaaaaaat 44 |||||||||||||||||||| Sbjct: 86283 aatatttttacagaaaaaat 86264
>gb|AC005060.3| Homo sapiens BAC clone CTB-86D3 from 7, complete sequence Length = 120169 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 ctgatgaacagatggagtca 525 |||||||||||||||||||| Sbjct: 20081 ctgatgaacagatggagtca 20100
>gb|AC124973.8| Mus musculus strain C57BL/6J clone rp23-329l13 map 19, complete sequence Length = 199006 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 gttcttccaaagtctaggac 418 |||||||||||||||||||| Sbjct: 140406 gttcttccaaagtctaggac 140387
>emb|AL607122.20| Human DNA sequence from clone RP11-511I2 on chromosome 1 Contains the 3' end of the gene for UMP-CMP kinase (UMP-CMPK), a novel gene, the FOXE3 gene for forkhead box E3, a novel gene (MGC12982), the FOXD2 gene for forkhead box D2 and three CpG islands, complete sequence Length = 106239 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 148 cttgtaattgtagtcatagtattt 171 |||||||||||||| ||||||||| Sbjct: 24228 cttgtaattgtagttatagtattt 24251
>gb|BC104920.1| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 5, mRNA (cDNA clone MGC:132580 IMAGE:8143923), complete cds Length = 2782 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 ctgatgaacagatggagtca 525 |||||||||||||||||||| Sbjct: 842 ctgatgaacagatggagtca 861
>emb|AL162573.15| Human DNA sequence from clone RP11-275J18 on chromosome 13, complete sequence Length = 166509 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 tttaaacaagaaatattttt 33 |||||||||||||||||||| Sbjct: 12262 tttaaacaagaaatattttt 12281
>emb|AL008636.1|HS722E9 Human DNA sequence from clone CTA-722E9 on chromosome 22q13.2-13.33, complete sequence Length = 81674 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 268 catttgcagcaggaaacagtaaaa 291 ||||||||| |||||||||||||| Sbjct: 34632 catttgcagaaggaaacagtaaaa 34609
>emb|Z81007.1|HS227P17 Human DNA sequence from clone RP1-227P17 on chromosome X, complete sequence Length = 82951 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 aggaaacagtaaaaaatgaaggca 301 ||||||||| |||||||||||||| Sbjct: 8218 aggaaacaggaaaaaatgaaggca 8195
>gb|AC101786.7| Mus musculus chromosome 1, clone RP24-146K19, complete sequence Length = 116889 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 agaaatcactcttcctggat 121 |||||||||||||||||||| Sbjct: 9937 agaaatcactcttcctggat 9956
>emb|CR382401.1| Plasmodium falciparum chromosome 6, complete sequence; segment 4/5 Length = 337203 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aaatatttttacagaaaaaa 43 |||||||||||||||||||| Sbjct: 226480 aaatatttttacagaaaaaa 226499
>emb|AL603710.8| Mouse DNA sequence from clone RP23-247B13 on chromosome 11 Contains the 3' end of the Nt5m gene for 5'-3'-nucleotidase (mitochondrial), four novel genes, the Rasd1 gene for RAS dexamethasone-induced 1, the 3' end of the Pemt gene for phosphatidylethanolamine N-methyltransferase and two CpG islands, complete sequence Length = 179124 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 caggacagatcatttgcagc 277 |||||||||||||||||||| Sbjct: 18153 caggacagatcatttgcagc 18172
>gb|AC138065.25| Pan troglodytes clone rp43-11g4, complete sequence Length = 173247 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 cagaggaacatgatgcagag 543 |||||||||||||||||||| Sbjct: 92205 cagaggaacatgatgcagag 92224
>dbj|AK096988.1| Homo sapiens cDNA FLJ39669 fis, clone SMINT2008054 Length = 2303 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 cagaagcagcacttgtctgg 67 |||||||||||||||||||| Sbjct: 2012 cagaagcagcacttgtctgg 1993
>ref|NM_178559.3| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 5 (ABCB5), mRNA Length = 2906 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 ctgatgaacagatggagtca 525 |||||||||||||||||||| Sbjct: 1015 ctgatgaacagatggagtca 1034
>gb|AC091877.2| Homo sapiens chromosome 5 clone CTD-3061E14, complete sequence Length = 147536 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 11 atttttaaacaagaaatattttta 34 ||||||||||| |||||||||||| Sbjct: 90936 atttttaaacatgaaatattttta 90959
>gb|AC067773.4| Homo sapiens chromosome 8, clone RP11-706J10, complete sequence Length = 174397 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aatatttttacagaaaaaat 44 |||||||||||||||||||| Sbjct: 2478 aatatttttacagaaaaaat 2459
>emb|BX005389.12| Zebrafish DNA sequence from clone DKEY-10F11 in linkage group 16, complete sequence Length = 221363 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 gtatttctgtgtactgtgttgcag 189 ||||||||| |||||||||||||| Sbjct: 160843 gtatttctgagtactgtgttgcag 160820
>tpg|BK000190.1| TPA: TPA_exp: Mus musculus mitochondrial 5'(3')-deoxyribonucleotidase (Nt5m) gene, complete cds; nuclear gene for mitochondrial product Length = 28445 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 caggacagatcatttgcagc 277 |||||||||||||||||||| Sbjct: 12459 caggacagatcatttgcagc 12478
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atttttaaacaagaaatatt 30 |||||||||||||||||||| Sbjct: 218911 atttttaaacaagaaatatt 218930
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 ttcagagacagttgaagggt 583 |||||||||||||||||||| Sbjct: 19712935 ttcagagacagttgaagggt 19712954
>gb|AC055818.9|AC055818 Mus musculus, clone RP23-129C12, complete sequence Length = 237678 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 accagaagtcacttgtaatt 156 |||||||||||||||||||| Sbjct: 221146 accagaagtcacttgtaatt 221165
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 aaatgaaggcaaggaagcat 310 |||||||||||||||||||| Sbjct: 28272214 aaatgaaggcaaggaagcat 28272233
>gb|AC068808.20|AC068808 Mus musculus 11 BAC RP23-479J7 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 171146 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 caggacagatcatttgcagc 277 |||||||||||||||||||| Sbjct: 94176 caggacagatcatttgcagc 94157
>gb|AC015982.9| Homo sapiens BAC clone RP11-554J4 from 2, complete sequence Length = 191546 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ttaaacaagaaatattttta 34 |||||||||||||||||||| Sbjct: 63342 ttaaacaagaaatattttta 63361
>gb|AC153497.8| Mus musculus 10 BAC RP23-226H21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 179741 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggaattcaacctttttcagc 448 |||||||||||||||||||| Sbjct: 21848 ggaattcaacctttttcagc 21829
>gb|AC156800.2| Mus musculus BAC clone RP23-366B23 from chromosome 9, complete sequence Length = 190619 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 accagaagtcacttgtaatt 156 |||||||||||||||||||| Sbjct: 7738 accagaagtcacttgtaatt 7757
>gb|AC019206.4| Homo sapiens BAC clone RP11-401N16 from 2, complete sequence Length = 207818 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atttttaaacaagaaatatt 30 |||||||||||||||||||| Sbjct: 69612 atttttaaacaagaaatatt 69631
>gb|AF319622.1| Homo sapiens P-glycoprotein mRNA, complete cds Length = 2051 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 ctgatgaacagatggagtca 525 |||||||||||||||||||| Sbjct: 160 ctgatgaacagatggagtca 179
>gb|AY851365.1| Homo sapiens ABCB5beta (ABCB5) mRNA, complete cds Length = 2792 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 ctgatgaacagatggagtca 525 |||||||||||||||||||| Sbjct: 901 ctgatgaacagatggagtca 920
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1743_B12 Length = 175645 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 aaatgaaggcaaggaagcat 310 |||||||||||||||||||| Sbjct: 63971 aaatgaaggcaaggaagcat 63990
>gb|BC104894.1| Homo sapiens ATP-binding cassette, sub-family B (MDR/TAP), member 5, mRNA (cDNA clone IMAGE:8143897), partial cds Length = 2784 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 ctgatgaacagatggagtca 525 |||||||||||||||||||| Sbjct: 844 ctgatgaacagatggagtca 863
>dbj|AK066093.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059O06, full insert sequence Length = 1612 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aaatgaaggcaaggaagcat 310 |||||||||||||||||||| Sbjct: 1078 aaatgaaggcaaggaagcat 1059
>gb|AC153825.7| Mus musculus 10 BAC RP23-70B19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 279677 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ggaattcaacctttttcagc 448 |||||||||||||||||||| Sbjct: 199777 ggaattcaacctttttcagc 199758
>gb|AC101783.12| Mus musculus chromosome 1, clone RP24-136B19, complete sequence Length = 169909 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 agaaatcactcttcctggat 121 |||||||||||||||||||| Sbjct: 3118 agaaatcactcttcctggat 3099
>emb|AL157996.8|CNS01RGH Human chromosome 14 DNA sequence BAC C-2525P14 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209242 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 cagaagcagcacttgtctgg 67 |||||||||||||||||||| Sbjct: 159650 cagaagcagcacttgtctgg 159669
>emb|AL121694.4|CNS01DS9 Human chromosome 14 DNA sequence BAC R-701B16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 175160 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 aagaaatatttttacagaaaaaat 44 ||||||||||||| |||||||||| Sbjct: 137999 aagaaatattttttcagaaaaaat 138022
>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete sequence Length = 203615 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aatatttttacagaaaaaat 44 |||||||||||||||||||| Sbjct: 60166 aatatttttacagaaaaaat 60147
>gb|AC074314.29| 433m13, complete sequence Length = 209644 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aatatttttacagaaaaaat 44 |||||||||||||||||||| Sbjct: 176999 aatatttttacagaaaaaat 176980
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 atttttaaacaagaaatatt 30 |||||||||||||||||||| Sbjct: 219224 atttttaaacaagaaatatt 219243
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 564 ttcagagacagttgaagggt 583 |||||||||||||||||||| Sbjct: 19998792 ttcagagacagttgaagggt 19998811
>emb|AL772404.5| Mouse DNA sequence from clone RP23-374O4 on chromosome 2, complete sequence Length = 157345 Score = 40.1 bits (20), Expect = 8.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 6 atatnatttttaaacaagaaatatttt 32 |||| ||||||||||||||| |||||| Sbjct: 96233 atattatttttaaacaagaattatttt 96259
>emb|AL808133.17| Mouse DNA sequence from clone RP23-457N24 on chromosome X, complete sequence Length = 170192 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 acagtaaaaaatgaaggcaaggaa 306 |||| ||||||||||||||||||| Sbjct: 148342 acagaaaaaaatgaaggcaaggaa 148365 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 283 acagtaaaaaatgaaggcaaggaa 306 |||| ||||||||||||||||||| Sbjct: 113309 acagaaaaaaatgaaggcaaggaa 113332
>gb|AC146688.1| Gallus gallus BAC clone CH261-24P18 from chromosome unknown, complete sequence Length = 212571 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 aaaaaatgaaggcaaggaag 307 |||||||||||||||||||| Sbjct: 125975 aaaaaatgaaggcaaggaag 125994
>gb|AC141641.4| Mus musculus BAC clone RP23-336M12 from 8, complete sequence Length = 184896 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 12 tttttaaacaagaaatatttttacagaa 39 |||| |||||||||||||||||| |||| Sbjct: 63661 ttttaaaacaagaaatatttttaaagaa 63688
>emb|AL451076.14| Mouse DNA sequence from clone RP23-43O20 on chromosome X, complete sequence Length = 203581 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 283 acagtaaaaaatgaaggcaaggaa 306 |||| ||||||||||||||||||| Sbjct: 176689 acagaaaaaaatgaaggcaaggaa 176666
>emb|AL929218.3| Mouse DNA sequence from clone RP23-447G18 on chromosome 2, complete sequence Length = 58449 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 ttgctctttgttgtcaccat 366 |||||||||||||||||||| Sbjct: 43930 ttgctctttgttgtcaccat 43911
>gb|AC157476.2| Mus musculus BAC clone RP24-174O15 from chromosome 9, complete sequence Length = 161849 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 taaaggaacaatgcatttga 92 |||||||||||||||||||| Sbjct: 83838 taaaggaacaatgcatttga 83857 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,678,510 Number of Sequences: 3902068 Number of extensions: 6678510 Number of successful extensions: 145665 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145166 Number of HSP's gapped (non-prelim): 495 length of query: 619 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 596 effective length of database: 17,143,297,704 effective search space: 10217405431584 effective search space used: 10217405431584 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
