ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3a21 |
|---|---|
| Clone Library Name | barley_pub |
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 37.4 bits (85), Expect = 0.035 Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 19/206 (9%) Frame = -2 Query: 612 SPTPHPPNGGATPLLVGIANTRSWSQYYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKA 433 SP P G A + + Y G GF I++P ++ E E Y G Sbjct: 74 SPAPXAAYGEAANVFGKPKKNTDFLPYTGEGFKIQIPSKWNPSKEIE-------YPG--- 123 Query: 432 KVRAYAARFASPDRSELVSVVIKPSNQLKITFLEAKD--ITELGTLKEASKLFVPGSAK- 262 +V + F D + VSV+I P+++ IT + + ++++ L + +V +A Sbjct: 124 QVLRFEDNF---DATSNVSVMITPTDKKSITDYGSPEQFLSQVNYLL-GKQAYVGETASE 179 Query: 261 -------IYSARTIKVKDQE-GIRMYYFYEF-------GFDKQHVALMATVDSGKTYIAA 127 + +A ++ QE G + YY+ +H + ATV+ GK YI Sbjct: 180 GGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICK 239 Query: 126 ATAPETRW-ETDGVTLRSAAVSMSLA 52 A A + RW + + +AA S S+A Sbjct: 240 AQAGDKRWFKGARKFVENAATSFSVA 265
>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor| Length = 274 Score = 35.4 bits (80), Expect = 0.13 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 6/165 (3%) Frame = -2 Query: 531 YGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSNQ 352 +G G+S +P +F P+D++ D RFASP L SV++ P + Sbjct: 120 HGVGWSPIIPYAFS---VPQDWNEVPVSIADLGGTEI-DLRFASPKEGRL-SVIVAPVLR 174 Query: 351 LKITFLEAKDITELGTLKEASKLFVPG------SAKIYSARTIKVKDQEGIRMYYFYEFG 190 + I +G + F P K+ S+ V + +G R+YY +F Sbjct: 175 FADNLGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSN---VAEHDG-RLYY--QFE 228 Query: 189 FDKQHVALMATVDSGKTYIAAATAPETRWETDGVTLRSAAVSMSL 55 + HV + AT + Y+ + T +W+ L+ A S + Sbjct: 229 LEPPHVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRI 273
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 33.9 bits (76), Expect = 0.39 Identities = 39/155 (25%), Positives = 58/155 (37%), Gaps = 11/155 (7%) Frame = -2 Query: 534 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 355 Y G GF + +P ++ E E F + Y D + + +P + + P Sbjct: 98 YSGDGFKLSIPSKWNPSKERE-FPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEE 156 Query: 354 QL-KITFLEAKDITELGTLKEASKLFVP---GSAKIYSARTIKVKDQEGIRMYYFYEF-- 193 L K+ +L K T E F P +A I A V ++ YYF Sbjct: 157 FLSKVDYLLGKQAYFGKTASEGG--FDPDAVATANILEATASNVNGKD----YYFVSVLT 210 Query: 192 -----GFDKQHVALMATVDSGKTYIAAATAPETRW 103 +H + ATV+ GK YI A A + RW Sbjct: 211 RTADGDEGGKHQLITATVNDGKLYICKAQAGDKRW 245
>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 33.9 bits (76), Expect = 0.39 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 8/172 (4%) Frame = -2 Query: 543 WSQYYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIK 364 ++ Y G GF ++VP ++ E E + + Y D + +P + ++ Sbjct: 92 FTAYSGDGFQVQVPAKWNPSREVE-YPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGS 150 Query: 363 PSNQL-KITFLEAKDITELGTLKEASKLFVPGSAKIYSARTIKVKDQEGIRMYYFY---- 199 P L ++ +L K T E F + + ++D G YY Sbjct: 151 PEEFLSQVNYLLGKQAYFGETASEGG--FDNNAVATANILETNIQDVGGKPYYYLSVLTR 208 Query: 198 --EFGFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 52 + +H + ATV+ GK YI A A + RW + + AA S S+A Sbjct: 209 TADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 33.5 bits (75), Expect = 0.51 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 8/167 (4%) Frame = -2 Query: 528 GSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSNQL 349 G GF I +P ++ E E F + Y D + +P + + P L Sbjct: 102 GDGFKILIPSKWNPSKEVE-FPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFL 160 Query: 348 -KITFLEAKDITELGTLKEASKLFVPGSAKIY-----SARTIKVKDQEGIRMYYFYEFGF 187 ++ +L K T+ E F P + + S + KD I + G Sbjct: 161 SQVDYLLGKQAYFGKTISEGG--FEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADGD 218 Query: 186 DK-QHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 52 + +H+ + ATV GK YI A A + RW + SAA S S A Sbjct: 219 EGGKHLLITATVSDGKLYICKAQAGDKRWFKGAKKFVESAASSFSAA 265
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 33.5 bits (75), Expect = 0.51 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 18/179 (10%) Frame = -2 Query: 534 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 355 Y G GF ++VP ++ E E Y G +V + F D + ++V++ P++ Sbjct: 98 YNGDGFKVQVPAKWNPSKEIE-------YPG---QVLRFEDNF---DATSNLNVMVTPTD 144 Query: 354 QLKITFLEAKD--ITELGTLKEASKLFVPGSAK-------IYSARTIKVKDQE-GIRMYY 205 + IT + + ++++ L F +++ + +A ++ QE G + YY Sbjct: 145 KKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYY 204 Query: 204 FYEF-------GFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 52 + +H + ATV+ GK YI A A + RW + + SAA S S+A Sbjct: 205 YLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263
>PSBP_SOLTU (P93566) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 33.5 bits (75), Expect = 0.51 Identities = 43/178 (24%), Positives = 66/178 (37%), Gaps = 17/178 (9%) Frame = -2 Query: 534 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 355 Y G GF +++P ++ E E F + Y D + +P + ++ P Sbjct: 95 YNGDGFKLQIPAKWNPSKEIE-FPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEE 153 Query: 354 QL-KITFLEAKDI---------------TELGTLKEASKLFVPGSAKIYSARTIKVKDQE 223 L K+ +L K L EAS V G Y + + D + Sbjct: 154 FLSKVDYLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGD 213 Query: 222 GIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 52 E G +H + ATV+ GK YI A A + RW + +AA S S+A Sbjct: 214 --------EGG---KHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 33.1 bits (74), Expect = 0.67 Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 19/180 (10%) Frame = -2 Query: 534 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 355 Y G GF +++P ++ E E Y G +V + F D + V V I P++ Sbjct: 101 YNGDGFKLQIPSKWNPNKEVE-------YPG---QVLRFEDNF---DATSNVIVAITPTD 147 Query: 354 QLKIT-------FLEAKDITELGTLKEASKLFVPG---SAKIYSARTIKVKDQE-GIRMY 208 + IT FL D LG + K G S + A ++ E G + Y Sbjct: 148 KKSITDFGSPEQFLSQVDYL-LGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQY 206 Query: 207 YFYEF-------GFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 52 Y+ +H + ATV+ GK YI A A + RW + + A S SLA Sbjct: 207 YYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 266
>PSBP_LYCES (P29795) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 32.7 bits (73), Expect = 0.87 Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 17/178 (9%) Frame = -2 Query: 534 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 355 Y G GF ++VP ++ E E + + Y D + +P + ++ P Sbjct: 93 YNGDGFKLQVPAKWNPSKEVE-YPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEE 151 Query: 354 QL-KITFLEAKDI------TELG---------TLKEASKLFVPGSAKIYSARTIKVKDQE 223 L K+ +L K +E G L EAS V G Y + + D + Sbjct: 152 FLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGD 211 Query: 222 GIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 52 E G +H + ATV+ GK YI A A + RW + +AA S S+A Sbjct: 212 --------EGG---KHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 32.7 bits (73), Expect = 0.87 Identities = 48/180 (26%), Positives = 71/180 (39%), Gaps = 19/180 (10%) Frame = -2 Query: 534 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 355 Y G GF +++P ++ E E Y G +V + F D + V V I P++ Sbjct: 100 YNGDGFKLQIPSKWNPNKEVE-------YPG---QVLRFEDNF---DATSNVIVAITPTD 146 Query: 354 QLKIT-------FLEAKDITELGTLKEASKLFVPG---SAKIYSARTIKVKDQE-GIRMY 208 + IT FL D LG + K G S + A ++ E G + Y Sbjct: 147 KKSITDFGSPEQFLSQVDYL-LGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPY 205 Query: 207 YFYEF-------GFDKQHVALMATVDSGKTYIAAATAPETRWETDGVT-LRSAAVSMSLA 52 Y+ +H + ATV+ GK YI A A + RW + + A S SLA Sbjct: 206 YYLSVLTRTADGNEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265
>PSBP_FRIAG (O49080) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 264 Score = 32.7 bits (73), Expect = 0.87 Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 9/153 (5%) Frame = -2 Query: 534 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 355 Y G GF++ +P ++ E E F + Y D V + + +P + ++ P Sbjct: 99 YTGDGFNLLIPAKWNPSKEVE-FPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEE 157 Query: 354 QLK-ITFLEAKDITELGTLKEASKLFVPGSAKIYSARTIKVKDQE-GIRMYYFYEF---- 193 L + +L K T E F P S + +A ++V G + YY Sbjct: 158 FLSTVDYLLGKQAYSGKTASEGG--FDPDS--VATANILEVSTPVVGGKQYYNISVLTRT 213 Query: 192 ---GFDKQHVALMATVDSGKTYIAAATAPETRW 103 +H + ATV GK YI A A + RW Sbjct: 214 ADGDEGGKHHVISATVTDGKLYICKAQAGDKRW 246
>TL19_ARATH (P82658) Thylakoid lumenal 19 kDa protein, chloroplast precursor| (P19) Length = 229 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/66 (28%), Positives = 28/66 (42%) Frame = -2 Query: 279 VPGSAKIYSARTIKVKDQEGIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRWE 100 + G+ K+ S KD+ G ++YY YE +H + T + Y AP W Sbjct: 155 IAGADKVVSEER---KDETG-QVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWN 210 Query: 99 TDGVTL 82 D TL Sbjct: 211 RDHDTL 216
>PSBP_SPIOL (P12302) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 267 Score = 31.2 bits (69), Expect = 2.5 Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 16/160 (10%) Frame = -2 Query: 534 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 355 Y G GF + VP ++ E E F + Y D + + P + ++ P + Sbjct: 102 YNGDGFKLLVPSKWNPSKEKE-FPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPED 160 Query: 354 QL-KITFLEAKD---------------ITELGTLKEASKLFVPGSAKIYSARTIKVKDQE 223 L ++ +L K + + E+S V G K Y + T+ + + Sbjct: 161 FLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDG--KQYYSITVLTRTAD 218 Query: 222 GIRMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRW 103 G +H + ATV GK YI A A + RW Sbjct: 219 GDE---------GGKHQVIAATVKDGKLYICKAQAGDKRW 249
>PSBP1_TOBAC (Q7DM39) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 268 Score = 31.2 bits (69), Expect = 2.5 Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 15/176 (8%) Frame = -2 Query: 534 YYGSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSN 355 Y G GF ++VP ++ E E F + Y D + +P + ++ P Sbjct: 103 YNGDGFKLQVPAKWNPSKEVE-FPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEE 161 Query: 354 QL-KITFLEAKDIT----------ELGTLKEASKLFVPGSA---KIYSARTIKVKDQEGI 217 L ++ FL K E G + A+ L S K Y ++ + +G Sbjct: 162 FLTQVDFLLGKQAYFGKTDSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGD 221 Query: 216 RMYYFYEFGFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 52 +H + ATV+ GK YI A A + RW + + +AA S S+A Sbjct: 222 E---------GGKHQLISATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268
>UCP8_SCHPO (O94685) UBA domain-containing protein 8| Length = 884 Score = 30.8 bits (68), Expect = 3.3 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +3 Query: 72 QPNAASLHLSPTSSLEQWQQRYMSSHYPRWPLEQHVVCQNQIHRSNTS 215 +P A SLH +P+SSLE Q + ++ + + V QNQ + ++ S Sbjct: 441 EPTAVSLHENPSSSLEDLQSAFQNTSF-----QDQVSTQNQANTADIS 483
>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 217 Score = 30.8 bits (68), Expect = 3.3 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 18/177 (10%) Frame = -2 Query: 528 GSGFSIRVPPSFDDVLEPEDFSAAMTYYGDKAKVRAYAARFASPDRSELVSVVIKPSNQL 349 G GF ++VP ++ E E Y G +V Y F D + ++V++ P+++ Sbjct: 54 GDGFQVQVPAKWNPSREVE-------YPG---QVLRYEDNF---DATSNLNVMVTPTDKK 100 Query: 348 KITFLEAKD--ITELGTLKEASKLFVPGSAK-------IYSARTIKVKDQE-GIRMYYFY 199 IT + + ++++ L F + + + +A ++ Q+ G + YY+ Sbjct: 101 SITDYGSPEEFLSQVNYLLGKQAYFGETACEGGFDNNAVATANILETNIQDVGGKPYYYL 160 Query: 198 EF-------GFDKQHVALMATVDSGKTYIAAATAPETRW-ETDGVTLRSAAVSMSLA 52 +H + ATV+ GK YI A A + RW + + AA S S+A Sbjct: 161 SVLTRTADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 217
>RDRP_LVX (P27327) RNA replication protein (ORF 1 protein) [Includes:| RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] (Fragment) Length = 162 Score = 30.4 bits (67), Expect = 4.3 Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 20/130 (15%) Frame = -2 Query: 501 PSFDDVLEPEDFSAAMTYYGDKAKVRAYAAR-FASPDRSELVSVVIKPSNQLKITFLEAK 325 P+FD E A+ Y+ K +V A+ +A D ++ + ++KPS +L +E K Sbjct: 10 PTFDANTE-----CAIAYHHTKYQVEQGTAQLYAGDDMAQDTTPILKPSFRLIADRIELK 64 Query: 324 D-------------------ITELGTLKEASKLFVPGSAKIYSARTIKVKDQEGIRMYYF 202 +T G +KE KLF + +T +VK + + Sbjct: 65 SKEVTHTQVPGEYATFCGWCVTPKGIIKEPRKLFASLQLAKHIGKTAEVKTNYAHDLAHA 124 Query: 201 YEFGFDKQHV 172 Y G + Q V Sbjct: 125 YRLGDELQDV 134
>XYNB_STRLI (P26515) Endo-1,4-beta-xylanase B precursor (EC 3.2.1.8) (Xylanase| B) (1,4-beta-D-xylan xylanohydrolase B) Length = 335 Score = 29.3 bits (64), Expect = 9.7 Identities = 22/71 (30%), Positives = 30/71 (42%) Frame = -2 Query: 303 LKEASKLFVPGSAKIYSARTIKVKDQEGIRMYYFYEFGFDKQHVALMATVDSGKTYIAAA 124 L + L +PG+A+ A T+ +QEG Y+Y F D Q M + SG Y Sbjct: 27 LAALAALMLPGTAQ---ADTVVTTNQEGTNNGYYYSFWTDSQGTVSM-NMGSGGQY---- 78 Query: 123 TAPETRWETDG 91 T W G Sbjct: 79 ---STSWRNTG 86
>MUTS_SYMTH (Q67NK1) DNA mismatch repair protein mutS| Length = 875 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/41 (43%), Positives = 22/41 (53%) Frame = +1 Query: 433 GLVAIIGHRGAEILGLQDVVEGRRHADGEAAAVVLRPRPRV 555 GL A + R EIL + EG R + EAAA LR +P V Sbjct: 791 GLPASVVERAREILATLEEQEGERKSRREAAAQRLRRQPAV 831 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,378,280 Number of Sequences: 219361 Number of extensions: 1743552 Number of successful extensions: 5223 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 5048 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5216 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
