No.
Definition
Score (bits)
E Value
1 dbj|AK060678.1| Oryza sativa (japonica cultivar-group) cDNA clon...
466
e-128
2 gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome...
139
1e-29
3 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
139
1e-29
4 dbj|AB018798.1| Plasmodium yoelii gene for P-Type ATPase, comple...
44
0.54
5 gb|AC140134.2| Homo sapiens chromosome 5 clone RP11-1319K7, comp...
42
2.1
6 gb|AC139778.2| Homo sapiens chromosome 5 clone RP11-1012N14, com...
42
2.1
7 gb|AC139277.2| Homo sapiens chromosome 5 clone RP11-619K7, compl...
42
2.1
8 gb|AC010217.6| Homo sapiens chromosome 5 clone CTC-202F24, compl...
42
2.1
9 gb|AC016554.8| Homo sapiens chromosome 5 clone CTC-340H12, compl...
42
2.1
10 gb|AC022119.4|AC022119 Homo sapiens chromosome 5 clone CTC-566F1...
42
2.1
11 gb|AC139834.2| Homo sapiens chromosome 5 clone RP11-974F13, comp...
42
2.1
12 gb|AC139494.2| Homo sapiens chromosome 5 clone RP11-846E15, comp...
42
2.1
13 gb|AC004999.1|AC004999 Homo sapiens PAC clone RP1-215P15 from 5q...
42
2.1
14 emb|AL672307.9| Mouse DNA sequence from clone RP23-141N2 on chro...
42
2.1
15 gb|AC154031.1| Drosophila melanogaster clone CH223-18M04, comple...
40
8.4
16 gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
40
8.4
17 gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome...
40
8.4
18 gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
40
8.4
19 gb|AC159443.1| Trypanosoma brucei chromosome 5 clone RPCI93-30H1...
40
8.4
20 gb|AY091599.1| Infectious salmon anemia virus isolate RPC/NB 980...
40
8.4
21 gb|AC072052.6| Homo sapiens BAC clone CTD-2195F21 from 7, comple...
40
8.4
22 gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome...
40
8.4
23 gb|AY118142.1| Uncultured Desulfobacterium sp. clone OR-M2 16S r...
40
8.4
24 gb|AY167025.1| Schistosoma haematobium acetylcholinesterase gene...
40
8.4
25 emb|AL607106.10| Human DNA sequence from clone RP11-207N22 on ch...
40
8.4
26 gb|AC093574.3| Homo sapiens chromosome 3 clone RP11-178K11, comp...
40
8.4
27 gb|AC165064.2| Phakopsora pachyrhizi clone JGIAFNA-2193J23, comp...
40
8.4
28 gb|AC090204.11| Homo sapiens chromosome 8, clone RP11-11N9, comp...
40
8.4
29 gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
40
8.4
30 gb|AC113195.8| Homo sapiens chromosome 18, clone RP11-1112K22, c...
40
8.4
31 gb|AC113209.4| Homo sapiens chromosome 8, clone RP11-1002K11, co...
40
8.4
32 gb|AC087534.8| Homo sapiens chromosome 18, clone RP11-716B20, co...
40
8.4
33 ref|XM_940588.1| PREDICTED: Homo sapiens similar to CG11064-PA (...
40
8.4
34 gb|AF306549.1|AF306549 Infectious salmon anemia virus putative n...
40
8.4
35 gb|AC012087.10|AC012087 Homo sapiens 3 BAC RP11-317L10,RP11-150K...
40
8.4
36 gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 o...
40
8.4
37 gb|AC122767.16| Mus musculus chromosome 7, clone RP24-143L4, com...
40
8.4
38 gb|AC136741.24| Mus musculus chromosome 7, clone RP23-172P1, com...
40
8.4
>gb|AC135418.3 | Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBa0035J16, complete sequence
Length = 170233
Score = 139 bits (70), Expect = 1e-29
Identities = 94/102 (92%)
Strand = Plus / Minus
Query: 471 cctcgggctccaagacgtcgtcgaaggacggcggcacgcggatggagaagccgctgccgt 530
||||||||||||||| |||||||||||| || || |||||||||||||||||||||||||
Sbjct: 73843 cctcgggctccaagatgtcgtcgaaggaagggggaacgcggatggagaagccgctgccgt 73784
Query: 531 agtactgcgaccacgacctcgtgtttgcgatgccgaccagca 572
||||||||||||||||| | ||||| ||||||||| ||||||
Sbjct: 73783 agtactgcgaccacgacttggtgttcgcgatgccgcccagca 73742
Score = 89.7 bits (45), Expect = 1e-14
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 330 cctctaggaatgtgatcttgagctgattggatggcttgattaccacacttacaagttctg 389
|||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct: 74298 cctctaggaatgtgattttgagctgattcgatggcttaattaccacgcttacaagttcag 74239
Query: 390 acctg 394
|||||
Sbjct: 74238 acctg 74234
Score = 73.8 bits (37), Expect = 6e-10
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 272 ccaggtacaaataacttggatgcctcctttagagtgcccaactccgttatatctttggcc 331
||||||||||||| ||| ||||||||||||| |||||||| || |||||||||||||||
Sbjct: 75126 ccaggtacaaatatctttgatgcctcctttaaagtgcccaggtctgttatatctttggcc 75067
Query: 332 t 332
|
Sbjct: 75066 t 75066
Score = 69.9 bits (35), Expect = 9e-09
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 229 atccttaactttaattgttcgagctgagtatatttttgc 267
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 75787 atccttaactttaattgttcgagctgagtataattttgc 75749
Score = 60.0 bits (30), Expect = 9e-06
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 58 agacatagatacagcagccgaacgcagcgtcactccatctgtctcccacctcgtctctgg 117
||||| ||||||||||||||| |||| | |||| ||||| |||||| | ||||||||
Sbjct: 76339 agacaaagatacagcagccgatcgcaacttcacgccatcatcgtcccactttgtctctgg 76280
Query: 118 agcagtggcagcagcgatatatgtct 143
|||||||||| | || ||||||||||
Sbjct: 76279 agcagtggcaccggcaatatatgtct 76254
Score = 58.0 bits (29), Expect = 4e-05
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 146 ccactatccacggtggccattagagcaacatgttgtttgtcaaaaccaaattcatagaag 205
||||||| ||| || ||||||| ||||||||||| |||||| | |||||| ||||| |||
Sbjct: 75997 ccactattcacagtagccattacagcaacatgttctttgtccacaccaaactcataaaag 75938
Query: 206 taata 210
|||||
Sbjct: 75937 taata 75933
Score = 48.1 bits (24), Expect = 0.035
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 390 acctgtctggagatgcgaaccgagctgcgtacgccctgaccttggccttgtcgccataat 449
||||||| ||||| ||||| ||||| ||||| | |||| ||| ||||||||||| || |
Sbjct: 74041 acctgtccggagacgcgaagcgagcagcgtatgtcctgggcttcgccttgtcgccgtagt 73982
Query: 450 aggtcatc 457
||||||||
Sbjct: 73981 aggtcatc 73974
>dbj|AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 139 bits (70), Expect = 1e-29
Identities = 94/102 (92%)
Strand = Plus / Minus
Query: 471 cctcgggctccaagacgtcgtcgaaggacggcggcacgcggatggagaagccgctgccgt 530
||||||||||||||| |||||||||||| || || |||||||||||||||||||||||||
Sbjct: 19370494 cctcgggctccaagatgtcgtcgaaggaagggggaacgcggatggagaagccgctgccgt 19370435
Query: 531 agtactgcgaccacgacctcgtgtttgcgatgccgaccagca 572
||||||||||||||||| | ||||| ||||||||| ||||||
Sbjct: 19370434 agtactgcgaccacgacttggtgttcgcgatgccgcccagca 19370393
Score = 89.7 bits (45), Expect = 1e-14
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 330 cctctaggaatgtgatcttgagctgattggatggcttgattaccacacttacaagttctg 389
|||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| |
Sbjct: 19370949 cctctaggaatgtgattttgagctgattcgatggcttaattaccacgcttacaagttcag 19370890
Query: 390 acctg 394
|||||
Sbjct: 19370889 acctg 19370885
Score = 73.8 bits (37), Expect = 6e-10
Identities = 55/61 (90%)
Strand = Plus / Minus
Query: 272 ccaggtacaaataacttggatgcctcctttagagtgcccaactccgttatatctttggcc 331
||||||||||||| ||| ||||||||||||| |||||||| || |||||||||||||||
Sbjct: 19371777 ccaggtacaaatatctttgatgcctcctttaaagtgcccaggtctgttatatctttggcc 19371718
Query: 332 t 332
|
Sbjct: 19371717 t 19371717
Score = 69.9 bits (35), Expect = 9e-09
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 229 atccttaactttaattgttcgagctgagtatatttttgc 267
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 19372438 atccttaactttaattgttcgagctgagtataattttgc 19372400
Score = 60.0 bits (30), Expect = 9e-06
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 58 agacatagatacagcagccgaacgcagcgtcactccatctgtctcccacctcgtctctgg 117
||||| ||||||||||||||| |||| | |||| ||||| |||||| | ||||||||
Sbjct: 19372990 agacaaagatacagcagccgatcgcaacttcacgccatcatcgtcccactttgtctctgg 19372931
Query: 118 agcagtggcagcagcgatatatgtct 143
|||||||||| | || ||||||||||
Sbjct: 19372930 agcagtggcaccggcaatatatgtct 19372905
Score = 58.0 bits (29), Expect = 4e-05
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 146 ccactatccacggtggccattagagcaacatgttgtttgtcaaaaccaaattcatagaag 205
||||||| ||| || ||||||| ||||||||||| |||||| | |||||| ||||| |||
Sbjct: 19372648 ccactattcacagtagccattacagcaacatgttctttgtccacaccaaactcataaaag 19372589
Query: 206 taata 210
|||||
Sbjct: 19372588 taata 19372584
Score = 48.1 bits (24), Expect = 0.035
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 390 acctgtctggagatgcgaaccgagctgcgtacgccctgaccttggccttgtcgccataat 449
||||||| ||||| ||||| ||||| ||||| | |||| ||| ||||||||||| || |
Sbjct: 19370692 acctgtccggagacgcgaagcgagcagcgtatgtcctgggcttcgccttgtcgccgtagt 19370633
Query: 450 aggtcatc 457
||||||||
Sbjct: 19370632 aggtcatc 19370625
Score = 40.1 bits (20), Expect = 8.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 tgcaaaatcatgcaagagac 61
||||||||||||||||||||
Sbjct: 896697 tgcaaaatcatgcaagagac 896716
>gb|AC136741.24 | Mus musculus chromosome 7, clone RP23-172P1, complete sequence
Length = 211802
Score = 40.1 bits (20), Expect = 8.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 251 gctgagtatatttttgcact 270
||||||||||||||||||||
Sbjct: 160680 gctgagtatatttttgcact 160699
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,778,712
Number of Sequences: 3902068
Number of extensions: 4778712
Number of successful extensions: 128826
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128609
Number of HSP's gapped (non-prelim): 214
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)