ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2l13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT008978.1| Triticum aestivum clone wdk2c.pk005.h13:fis, full... 100 4e-18
2emb|AJ299251.1|NTA299251 Nicotiana tabacum partial mRNA for lysy... 92 1e-15
3ref|NM_112003.2| Arabidopsis thaliana ATP binding / aspartate-tR... 76 6e-11
4gb|AY099551.1| Arabidopsis thaliana lysyl-tRNA synthetase (At3g1... 76 6e-11
5dbj|AK099302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 6e-11
6gb|BT002123.1| Arabidopsis thaliana lysyl-tRNA synthetase (At3g1... 76 6e-11
7dbj|AK063765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 6e-11
8gb|AF125574.1|AF125574 Arabidopsis thaliana lysyl-tRNA synthetas... 76 6e-11
9gb|BT018881.1| Zea mays clone EL01T0203E10.d mRNA sequence 74 3e-10
10gb|AY103979.1| Zea mays PCO072809 mRNA sequence 74 3e-10
11gb|AC009918.5|ATAC009918 Arabidopsis thaliana chromosome III BAC... 64 2e-07
12gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC... 64 2e-07
13gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 52 0.001
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 0.001
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
16dbj|AP000411.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 52 0.001
17gb|BC102322.1| Bos taurus similar to Lysyl-tRNA synthetase (Lysi... 50 0.004
18ref|NM_001034356.1| Bos taurus similar to Lysyl-tRNA synthetase ... 50 0.004
19gb|AY871281.1| Gekko japonicus GekBS062P mRNA, complete cds 50 0.004
20gb|AC148970.3| Medicago truncatula chromosome 2 BAC clone mth2-7... 46 0.057
21ref|XM_963119.1| PREDICTED: Tribolium castaneum similar to CG121... 46 0.057
22emb|X94451.1|LELYSRSGN L.esculentum mRNA for lysyl-tRNA syntheta... 46 0.057
23ref|XM_511115.1| PREDICTED: Pan troglodytes similar to lysyl-tRN... 42 0.88
24gb|BC076028.1| Danio rerio lysyl-tRNA synthetase, mRNA (cDNA clo... 42 0.88
25gb|AC161581.3| Mus musculus chromosome 15, clone RP24-75A19, com... 42 0.88
26gb|AY648786.1| Danio rerio lysyl-tRNA synthetase mRNA, complete cds 42 0.88
27ref|XM_788370.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 0.88
28emb|Z31711.1|CLLYTRSY C.longicaudatus mRNA for lysyl tRNA synthe... 42 0.88
29emb|CR857191.1| Pongo pygmaeus mRNA; cDNA DKFZp468A0216 (from cl... 42 0.88
30gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complet... 42 0.88
31ref|NM_001002386.1| Danio rerio lysyl-tRNA synthetase (kars), mRNA 42 0.88
32gb|AC007040.2|AC007040 Homo sapiens BAC clone RP11-298H3 from 2,... 42 0.88
33ref|NM_003324.3| Homo sapiens tubby like protein 3 (TULP3), mRNA 40 3.5
34gb|AC005911.6| Homo sapiens 12 BAC RP11-372B4 (Roswell Park Canc... 40 3.5
35gb|BC047965.1| Xenopus laevis lysyl-tRNA synthetase, mRNA (cDNA ... 40 3.5
36ref|XM_784716.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.5
37dbj|AK024246.1| Homo sapiens cDNA FLJ14184 fis, clone NT2RP20051... 40 3.5
38gb|AC109458.3| Homo sapiens chromosome 5 clone RP11-257I8, compl... 40 3.5
39gb|AC160131.2| Mus musculus BAC clone RP23-226D9 from chromosome... 40 3.5
40dbj|AK045146.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 3.5
41gb|BC032587.1| Homo sapiens tubby like protein 3, mRNA (cDNA clo... 40 3.5
42emb|AJ297523.1|MCI297523 Mucor circinelloides cigA gene 40 3.5
43emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chr... 40 3.5
44gb|BC019618.1| Homo sapiens tubby like protein 3, mRNA (cDNA clo... 40 3.5 
>gb|BT008978.1| Triticum aestivum clone wdk2c.pk005.h13:fis, full insert mRNA
           sequence
          Length = 702

 Score = 99.6 bits (50), Expect = 4e-18
 Identities = 178/221 (80%)
 Strand = Plus / Minus

                                                                       
Query: 17  gccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaaccgttgtctt 76
           ||||| |||||||| || || |||||||||  | | || || || ||||||||||| |||
Sbjct: 262 gccatagcttcatcatcaccagattgacgatcctttagttgttcctcaaaccgttgcctt 203

                                                                       
Query: 77  tgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttgttgatgaac 136
           ||||| |  ||||| |||||||| |||||||||||||||||||| || ||||| |  || 
Sbjct: 202 tgcacaacaggatcgttcaactcagtgtaggcattgcacacctcgtgtttgttaacaaag 143

                                                                       
Query: 137 aactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagtgggctcatt 196
           | |||||| ||||||||||  || |   | | ||| ||||| || |||| ||| ||||||
Sbjct: 142 agctcaaacctttctgtcaacccaggtcgggacctatgccactttgccaatggactcatt 83

                                                    
Query: 197 atctctggatggntaatgataaaagttgggttcacacatgt 237
           |||||||| ||| | || ||||| |||||||||||||||||
Sbjct: 82  atctctgggtggttgataataaatgttgggttcacacatgt 42
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>emb|AJ299251.1|NTA299251 Nicotiana tabacum partial mRNA for lysyl-tRNA synthetase (lysRS
           gene)
          Length = 702

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 123/149 (82%)
 Strand = Plus / Minus

                                                                       
Query: 89  tcattcaactcggtgtaggcattgcacacctcatgcttgttgatgaacaactcaaatctt 148
           |||||||| || ||||| |||||||| |  ||||||||||| |||||||| ||||| | |
Sbjct: 155 tcattcaattcagtgtatgcattgcaaagttcatgcttgttaatgaacaattcaaaacgt 96

                                                                       
Query: 149 tctgtcagtcctgactgagtcctgtgccatttggccagtgggctcattatctctggatgg 208
           |||||||| ||||  | ||  |||||||| || ||||  || ||||||||||| ||||||
Sbjct: 95  tctgtcaggcctggtttagatctgtgccactttgccaaaggactcattatctcgggatgg 36

                                        
Query: 209 ntaatgataaaagttgggttcacacatgt 237
            | ||||||||||| ||||| ||||||||
Sbjct: 35  ttgatgataaaagtagggttaacacatgt 7
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>ref|NM_112003.2| Arabidopsis thaliana ATP binding / aspartate-tRNA ligase/ lysine-tRNA
            ligase/ nucleic acid binding / tRNA ligase AT3G11710
            mRNA, complete cds
          Length = 2155

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 175/221 (79%)
 Strand = Plus / Minus

                                                                        
Query: 17   gccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaaccgttgtctt 76
            |||||||||||||||||||| || || |||  | | ||||||||  |||| || || |  
Sbjct: 1773 gccatcgcttcatcgtctccagactgtcgatccttgagctgatcagcaaaacgctggcgc 1714

                                                                        
Query: 77   tgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttgttgatgaac 136
            || ||||  ||||| || | ||| |||||||||||||| |  ||||| ||||||||||||
Sbjct: 1713 tgtaccacaggatcgtttagctccgtgtaggcattgcagagttcatgtttgttgatgaac 1654

                                                                        
Query: 137  aactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagtgggctcatt 196
            | ||| ||||| ||||||| |||   ||  |  ||||||||||| ||||  || ||||| 
Sbjct: 1653 agctcgaatctctctgtcaatccactcttcgatctgtgccatttagccaaaggactcatg 1594

                                                     
Query: 197  atctctggatggntaatgataaaagttgggttcacacatgt 237
            ||||| || ||| | ||||| ||||||||||||||||||||
Sbjct: 1593 atctcgggctggttgatgatgaaagttgggttcacacatgt 1553
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>gb|AY099551.1| Arabidopsis thaliana lysyl-tRNA synthetase (At3g11710) mRNA, complete
            cds
          Length = 2083

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 175/221 (79%)
 Strand = Plus / Minus

                                                                        
Query: 17   gccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaaccgttgtctt 76
            |||||||||||||||||||| || || |||  | | ||||||||  |||| || || |  
Sbjct: 1749 gccatcgcttcatcgtctccagactgtcgatccttgagctgatcagcaaaacgctggcgc 1690

                                                                        
Query: 77   tgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttgttgatgaac 136
            || ||||  ||||| || | ||| |||||||||||||| |  ||||| ||||||||||||
Sbjct: 1689 tgtaccacaggatcgtttagctccgtgtaggcattgcagagttcatgtttgttgatgaac 1630

                                                                        
Query: 137  aactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagtgggctcatt 196
            | ||| ||||| ||||||| |||   ||  |  ||||||||||| ||||  || ||||| 
Sbjct: 1629 agctcgaatctctctgtcaatccactcttcgatctgtgccatttagccaaaggactcatg 1570

                                                     
Query: 197  atctctggatggntaatgataaaagttgggttcacacatgt 237
            ||||| || ||| | ||||| ||||||||||||||||||||
Sbjct: 1569 atctcgggctggttgatgatgaaagttgggttcacacatgt 1529
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>dbj|AK099302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143D06, full
            insert sequence
          Length = 2164

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 175/221 (79%)
 Strand = Plus / Minus

                                                                        
Query: 17   gccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaaccgttgtctt 76
            ||||| |||||||| || || |||||||||  | | || || || ||||||||||| || 
Sbjct: 1769 gccatagcttcatcatcaccagattgacgatcctttagttgttcctcaaaccgttgcctc 1710

                                                                        
Query: 77   tgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttgttgatgaac 136
            || || |  |||||||| ||||| || || ||||||||||||||||||||||| |  || 
Sbjct: 1709 tgaacaacaggatcatttaactctgtatatgcattgcacacctcatgcttgttaacaaag 1650

                                                                        
Query: 137  aactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagtgggctcatt 196
            | |||||| || || |||| ||| |   ||| ||| ||||| || |||| ||| ||||||
Sbjct: 1649 agctcaaacctctcagtcaatccaggtcgagacctatgccactttgccaatggactcatt 1590

                                                     
Query: 197  atctctggatggntaatgataaaagttgggttcacacatgt 237
            |||||||||||| | || ||||| || || |||||||||||
Sbjct: 1589 atctctggatggttgataataaacgtgggattcacacatgt 1549
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>gb|BT002123.1| Arabidopsis thaliana lysyl-tRNA synthetase (At3g11710) mRNA, complete
            cds
          Length = 1938

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 175/221 (79%)
 Strand = Plus / Minus

                                                                        
Query: 17   gccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaaccgttgtctt 76
            |||||||||||||||||||| || || |||  | | ||||||||  |||| || || |  
Sbjct: 1685 gccatcgcttcatcgtctccagactgtcgatccttgagctgatcagcaaaacgctggcgc 1626

                                                                        
Query: 77   tgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttgttgatgaac 136
            || ||||  ||||| || | ||| |||||||||||||| |  ||||| ||||||||||||
Sbjct: 1625 tgtaccacaggatcgtttagctccgtgtaggcattgcagagttcatgtttgttgatgaac 1566

                                                                        
Query: 137  aactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagtgggctcatt 196
            | ||| ||||| ||||||| |||   ||  |  ||||||||||| ||||  || ||||| 
Sbjct: 1565 agctcgaatctctctgtcaatccactcttcgatctgtgccatttagccaaaggactcatg 1506

                                                     
Query: 197  atctctggatggntaatgataaaagttgggttcacacatgt 237
            ||||| || ||| | ||||| ||||||||||||||||||||
Sbjct: 1505 atctcgggctggttgatgatgaaagttgggttcacacatgt 1465
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>dbj|AK063765.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B05, full
            insert sequence
          Length = 2215

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 175/221 (79%)
 Strand = Plus / Minus

                                                                        
Query: 17   gccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaaccgttgtctt 76
            ||||| |||||||| || || |||||||||  | | || || || ||||||||||| || 
Sbjct: 1769 gccatagcttcatcatcaccagattgacgatcctttagttgttcctcaaaccgttgcctc 1710

                                                                        
Query: 77   tgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttgttgatgaac 136
            || || |  |||||||| ||||| || || ||||||||||||||||||||||| |  || 
Sbjct: 1709 tgaacaacaggatcatttaactctgtatatgcattgcacacctcatgcttgttaacaaag 1650

                                                                        
Query: 137  aactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagtgggctcatt 196
            | |||||| || || |||| ||| |   ||| ||| ||||| || |||| ||| ||||||
Sbjct: 1649 agctcaaacctctcagtcaatccaggtcgagacctatgccactttgccaatggactcatt 1590

                                                     
Query: 197  atctctggatggntaatgataaaagttgggttcacacatgt 237
            |||||||||||| | || ||||| || || |||||||||||
Sbjct: 1589 atctctggatggttgataataaacgtgggattcacacatgt 1549
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>gb|AF125574.1|AF125574 Arabidopsis thaliana lysyl-tRNA synthetase mRNA, complete cds
          Length = 2193

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 175/221 (79%)
 Strand = Plus / Minus

                                                                        
Query: 17   gccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaaccgttgtctt 76
            |||||||||||||||||||| || || |||  | | ||||||||  |||| || || |  
Sbjct: 1771 gccatcgcttcatcgtctccagactgtcgatccttgagctgatcagcaaaacgctggcgc 1712

                                                                        
Query: 77   tgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttgttgatgaac 136
            || ||||  ||||| || | ||| |||||||||||||| |  ||||| ||||||||||||
Sbjct: 1711 tgtaccacaggatcgtttagctccgtgtaggcattgcagagttcatgtttgttgatgaac 1652

                                                                        
Query: 137  aactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagtgggctcatt 196
            | ||| ||||| ||||||| |||   ||  |  ||||||||||| ||||  || ||||| 
Sbjct: 1651 agctcgaatctctctgtcaatccactcttcgatctgtgccatttagccaaaggactcatg 1592

                                                     
Query: 197  atctctggatggntaatgataaaagttgggttcacacatgt 237
            ||||| || ||| | ||||| ||||||||||||||||||||
Sbjct: 1591 atctcgggctggttgatgatgaaagttgggttcacacatgt 1551
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>gb|BT018881.1| Zea mays clone EL01T0203E10.d mRNA sequence
          Length = 2292

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 141/176 (80%)
 Strand = Plus / Minus

                                                                        
Query: 62   tcaaaccgttgtctttgcaccaatggatcattcaactcggtgtaggcattgcacacctca 121
            ||||||||||| || ||||| |  ||||| |||||||| ||||| || ||||||||||||
Sbjct: 1691 tcaaaccgttgcctctgcacaacaggatcgttcaactctgtgtatgcgttgcacacctca 1632

                                                                        
Query: 122  tgcttgttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgccatttg 181
            || ||||| |  |||||||| || || || |||| ||| |   | | ||| ||||| || 
Sbjct: 1631 tgtttgttaacaaacaactcgaacctctcagtcaatccaggtcgggacctatgccacttt 1572

                                                                    
Query: 182  gccagtgggctcattatctctggatggntaatgataaaagttgggttcacacatgt 237
            || | ||| |||||||||||||||||  | |||||||| ||||| |||||||||||
Sbjct: 1571 gctaatggactcattatctctggatgattgatgataaatgttggattcacacatgt 1516
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>gb|AY103979.1| Zea mays PCO072809 mRNA sequence
          Length = 2220

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 141/176 (80%)
 Strand = Plus / Minus

                                                                        
Query: 62   tcaaaccgttgtctttgcaccaatggatcattcaactcggtgtaggcattgcacacctca 121
            ||||||||||| || ||||| |  ||||| |||||||| ||||| || ||||||||||||
Sbjct: 1711 tcaaaccgttgcctctgcacaacaggatcgttcaactctgtgtatgcgttgcacacctca 1652

                                                                        
Query: 122  tgcttgttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgccatttg 181
            || ||||| |  |||||||| || || || |||| ||| |   | | ||| ||||| || 
Sbjct: 1651 tgtttgttaacaaacaactcgaacctctcagtcaatccaggtcgggacctatgccacttt 1592

                                                                    
Query: 182  gccagtgggctcattatctctggatggntaatgataaaagttgggttcacacatgt 237
            || | ||| |||||||||||||||||  | |||||||| ||||| |||||||||||
Sbjct: 1591 gctaatggactcattatctctggatgattgatgataaatgttggattcacacatgt 1536
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>gb|AC009918.5|ATAC009918 Arabidopsis thaliana chromosome III BAC T19F11 genomic sequence,
             complete sequence
          Length = 45173

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 97/119 (81%)
 Strand = Plus / Plus

                                                                         
Query: 119   tcatgcttgttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgccat 178
             ||||| ||||||||||||| ||| ||||| ||||||| |||   ||  |  |||||||||
Sbjct: 39609 tcatgtttgttgatgaacagctcgaatctctctgtcaatccactcttcgatctgtgccat 39668

                                                                        
Query: 179   ttggccagtgggctcattatctctggatggntaatgataaaagttgggttcacacatgt 237
             || ||||  || ||||| ||||| || ||| | ||||| ||||||||||||||||||||
Sbjct: 39669 ttagccaaaggactcatgatctcgggctggttgatgatgaaagttgggttcacacatgt 39727



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    gccatcgcttcatcgtctcc 36
             ||||||||||||||||||||
Sbjct: 39426 gccatcgcttcatcgtctcc 39445
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>gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC F26K24 genomic sequence,
            complete sequence
          Length = 100835

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 97/119 (81%)
 Strand = Plus / Plus

                                                                        
Query: 119  tcatgcttgttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgccat 178
            ||||| ||||||||||||| ||| ||||| ||||||| |||   ||  |  |||||||||
Sbjct: 3441 tcatgtttgttgatgaacagctcgaatctctctgtcaatccactcttcgatctgtgccat 3500

                                                                       
Query: 179  ttggccagtgggctcattatctctggatggntaatgataaaagttgggttcacacatgt 237
            || ||||  || ||||| ||||| || ||| | ||||| ||||||||||||||||||||
Sbjct: 3501 ttagccaaaggactcatgatctcgggctggttgatgatgaaagttgggttcacacatgt 3559



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 17   gccatcgcttcatcgtctcc 36
            ||||||||||||||||||||
Sbjct: 3258 gccatcgcttcatcgtctcc 3277
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                          
Query: 173    tgccatttggccagtgggctcattatctctggatggntaatgataaaagttgggttcaca 232
              ||||| || |||| ||| |||||||||||||||||| | || ||||| || || ||||||
Sbjct: 167865 tgccactttgccaatggactcattatctctggatggttgataataaacgtgggattcaca 167924

                   
Query: 233    catgt 237
              |||||
Sbjct: 167925 catgt 167929
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 173      tgccatttggccagtgggctcattatctctggatggntaatgataaaagttgggttcaca 232
                ||||| || |||| ||| |||||||||||||||||| | || ||||| || || ||||||
Sbjct: 21474954 tgccactttgccaatggactcattatctctggatggttgataataaacgtgggattcaca 21475013

                     
Query: 233      catgt 237
                |||||
Sbjct: 21475014 catgt 21475018
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                            
Query: 173      tgccatttggccagtgggctcattatctctggatggntaatgataaaagttgggttcaca 232
                ||||| || |||| ||| |||||||||||||||||| | || ||||| || || ||||||
Sbjct: 21467983 tgccactttgccaatggactcattatctctggatggttgataataaacgtgggattcaca 21468042

                     
Query: 233      catgt 237
                |||||
Sbjct: 21468043 catgt 21468047
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>dbj|AP000411.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K11J14
          Length = 90627

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 86    ggatcattcaactcggtgtaggcatt 111
             ||||||||||||||||||||||||||
Sbjct: 15373 ggatcattcaactcggtgtaggcatt 15398
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>gb|BC102322.1| Bos taurus similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
            (LysRS), mRNA (cDNA clone MGC:127504 IMAGE:7950855),
            complete cds
          Length = 2262

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 172  gtgccatttggccagtgggctcattatct 200
            ||||||||||||||| |||||||||||||
Sbjct: 1624 gtgccatttggccagagggctcattatct 1596
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>ref|NM_001034356.1| Bos taurus similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
            (LysRS) (MGC127504), mRNA
          Length = 2262

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 172  gtgccatttggccagtgggctcattatct 200
            ||||||||||||||| |||||||||||||
Sbjct: 1624 gtgccatttggccagagggctcattatct 1596
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>gb|AY871281.1| Gekko japonicus GekBS062P mRNA, complete cds
          Length = 2019

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 172  gtgccatttggccagtgggctcattatct 200
            ||||||||||||||| |||||||||||||
Sbjct: 1444 gtgccatttggccagagggctcattatct 1416
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>gb|AC148970.3| Medicago truncatula chromosome 2 BAC clone mth2-74j13, complete
             sequence
          Length = 83100

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 97/122 (79%)
 Strand = Plus / Minus

                                                                         
Query: 116   acctcatgcttgttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgc 175
             |||||||| |||||||| ||||| ||||| | ||| ||||| ||||  |  || ||||||
Sbjct: 64304 acctcatgtttgttgataaacaattcaaaacgttcagtcaggcctggttttgttctgtgc 64245

                                                                         
Query: 176   catttggccagtgggctcattatctctggatggntaatgataaaagttgggttcacacat 235
             || || ||||  || |||||||||||||| ||| | ||||| || || || || ||||||
Sbjct: 64244 cacttcgccaaaggactcattatctctgggtggtttatgatgaatgtaggattgacacat 64185

               
Query: 236   gt 237
             ||
Sbjct: 64184 gt 64183
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>ref|XM_963119.1| PREDICTED: Tribolium castaneum similar to CG12141-PA, isoform A
            (LOC656600), mRNA
          Length = 1754

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 59   tcttcaaaccgttgtctttgcaccaatggatcatt 93
            ||||||||||| |||||||||||||  ||||||||
Sbjct: 1484 tcttcaaaccgctgtctttgcaccatcggatcatt 1450
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>emb|X94451.1|LELYSRSGN L.esculentum mRNA for lysyl-tRNA synthetase (LysRS)
          Length = 2075

 Score = 46.1 bits (23), Expect = 0.057
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 177  atttggccagtgggctcattatctctggatggntaatgataaaagt 222
            |||| |||||||||||||| ||||| |||||| | || ||||||||
Sbjct: 1548 atttagccagtgggctcatgatctcaggatggttgataataaaagt 1503
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>ref|XM_511115.1| PREDICTED: Pan troglodytes similar to lysyl-tRNA synthetase
            (LOC454252), mRNA
          Length = 1878

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 86   ggatcattcaactcggtgtaggcattgca 114
            |||||||||| ||| ||||||||||||||
Sbjct: 1598 ggatcattcagctcagtgtaggcattgca 1570
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>gb|BC076028.1| Danio rerio lysyl-tRNA synthetase, mRNA (cDNA clone MGC:92483
            IMAGE:7045855), complete cds
          Length = 2247

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 86   ggatcattcaactcggtgtaggcattgca 114
            ||||| |||||||| ||||||||||||||
Sbjct: 1607 ggatcgttcaactctgtgtaggcattgca 1579
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>gb|AC161581.3| Mus musculus chromosome 15, clone RP24-75A19, complete sequence
          Length = 210059

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 105    aggcattgcacacctcatgct 125
              |||||||||||||||||||||
Sbjct: 107897 aggcattgcacacctcatgct 107917
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>gb|AY648786.1| Danio rerio lysyl-tRNA synthetase mRNA, complete cds
          Length = 2102

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 86   ggatcattcaactcggtgtaggcattgca 114
            ||||| |||||||| ||||||||||||||
Sbjct: 1559 ggatcgttcaactctgtgtaggcattgca 1531
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>ref|XM_788370.1| PREDICTED: Strongylocentrotus purpuratus similar to lysyl-tRNA
            synthetase (LOC588700), mRNA
          Length = 1800

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 86   ggatcattcaactcggtgtaggcattgca 114
            |||||||||||||| |||||||| |||||
Sbjct: 1532 ggatcattcaactctgtgtaggcgttgca 1504
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>emb|Z31711.1|CLLYTRSY C.longicaudatus mRNA for lysyl tRNA synthetase
          Length = 1970

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 86   ggatcattcaactcggtgtaggcattgca 114
            |||||||||| ||| ||||||||||||||
Sbjct: 1534 ggatcattcagctcagtgtaggcattgca 1506



 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 172  gtgccatttggccagtgggctcattatct 200
            ||||||||||||||| |||||||| ||||
Sbjct: 1448 gtgccatttggccagagggctcataatct 1420
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>emb|CR857191.1| Pongo pygmaeus mRNA; cDNA DKFZp468A0216 (from clone DKFZp468A0216)
          Length = 2168

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 86   ggatcattcaactcggtgtaggcattgca 114
            |||||||||| ||| ||||||||||||||
Sbjct: 1706 ggatcattcagctcagtgtaggcattgca 1678
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>gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complete sequence
          Length = 79804

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   tctttctgtcagtcctgactg 165
             |||||||||||||||||||||
Sbjct: 18890 tctttctgtcagtcctgactg 18910
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>ref|NM_001002386.1| Danio rerio lysyl-tRNA synthetase (kars), mRNA
          Length = 2247

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 86   ggatcattcaactcggtgtaggcattgca 114
            ||||| |||||||| ||||||||||||||
Sbjct: 1607 ggatcgttcaactctgtgtaggcattgca 1579
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>gb|AC007040.2|AC007040 Homo sapiens BAC clone RP11-298H3 from 2, complete sequence
          Length = 181671

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 172    gtgccatttggccagtgggct 192
              |||||||||||||||||||||
Sbjct: 149081 gtgccatttggccagtgggct 149101
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>ref|NM_003324.3| Homo sapiens tubby like protein 3 (TULP3), mRNA
          Length = 2945

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  ctgtcagtcctgactgagtc 169
            ||||||||||||||||||||
Sbjct: 1959 ctgtcagtcctgactgagtc 1940
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>gb|AC005911.6| Homo sapiens 12 BAC RP11-372B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 100701

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 150   ctgtcagtcctgactgagtc 169
             ||||||||||||||||||||
Sbjct: 36328 ctgtcagtcctgactgagtc 36347
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>gb|BC047965.1| Xenopus laevis lysyl-tRNA synthetase, mRNA (cDNA clone MGC:52992
            IMAGE:5536826), complete cds
          Length = 2076

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 83   aatggatcattcaactcggtgtaggcattgca 114
            ||||||||||||||||| || ||||| |||||
Sbjct: 1647 aatggatcattcaactctgtataggcgttgca 1616
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>ref|XM_784716.1| PREDICTED: Strongylocentrotus purpuratus similar to predicted CDS,
           reverse transcriptase family member (1O840) (LOC584871),
           partial mRNA
          Length = 713

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 68  cgttgtctttgcaccaatggatca 91
           |||||||||||||||| |||||||
Sbjct: 313 cgttgtctttgcaccattggatca 290
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>dbj|AK024246.1| Homo sapiens cDNA FLJ14184 fis, clone NT2RP2005144, highly similar to
            Homo sapiens tubby like protein 3 (TULP3) mRNA
          Length = 2175

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  ctgtcagtcctgactgagtc 169
            ||||||||||||||||||||
Sbjct: 2016 ctgtcagtcctgactgagtc 1997
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>gb|AC109458.3| Homo sapiens chromosome 5 clone RP11-257I8, complete sequence
          Length = 162191

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 159   ctgactgagtcctgtgccatttgg 182
             |||||| |||||||||||||||||
Sbjct: 82590 ctgactcagtcctgtgccatttgg 82613
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>gb|AC160131.2| Mus musculus BAC clone RP23-226D9 from chromosome 12, complete sequence
          Length = 202807

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   gatgaacaactcaaatcttt 149
             ||||||||||||||||||||
Sbjct: 21204 gatgaacaactcaaatcttt 21185
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>dbj|AK045146.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130040E15 product:fibronectin
            leucine rich transmembrane protein 3, full insert
            sequence
          Length = 4224

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 243  tccagaaaatgcccagtaatcttg 266
            ||||||||||| ||||||||||||
Sbjct: 2411 tccagaaaatggccagtaatcttg 2388
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>gb|BC032587.1| Homo sapiens tubby like protein 3, mRNA (cDNA clone MGC:45295
            IMAGE:5501868), complete cds
          Length = 2918

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  ctgtcagtcctgactgagtc 169
            ||||||||||||||||||||
Sbjct: 1932 ctgtcagtcctgactgagtc 1913
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>emb|AJ297523.1|MCI297523 Mucor circinelloides cigA gene
          Length = 2092

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  tgatcttcaaaccgttgtct 75
           ||||||||||||||||||||
Sbjct: 175 tgatcttcaaaccgttgtct 194
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>emb|AL928700.7| Mouse DNA sequence from clone RP23-388J20 on chromosome 2, complete
             sequence
          Length = 158364

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   tccagaaaatgcccagtaatcttg 266
             ||||||||||| ||||||||||||
Sbjct: 62678 tccagaaaatggccagtaatcttg 62701
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>gb|BC019618.1| Homo sapiens tubby like protein 3, mRNA (cDNA clone IMAGE:4539156)
          Length = 1362

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  ctgtcagtcctgactgagtc 169
            ||||||||||||||||||||
Sbjct: 1186 ctgtcagtcctgactgagtc 1167



 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 150 ctgtcagtcctgactgagtc 169
           ||||||||||||||||||||
Sbjct: 698 ctgtcagtcctgactgagtc 717


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,096,229
Number of Sequences: 3902068
Number of extensions: 2096229
Number of successful extensions: 33511
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33402
Number of HSP's gapped (non-prelim): 107
length of query: 269
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 247
effective length of database: 17,147,199,772
effective search space: 4235358343684
effective search space used: 4235358343684
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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