ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2l11 |
|---|---|
| Clone Library Name | barley_pub |
>WIR1B_WHEAT (Q01481) WIR1B protein| Length = 85 Score = 37.7 bits (86), Expect = 0.017 Identities = 26/56 (46%), Positives = 28/56 (50%), Gaps = 6/56 (10%) Frame = -1 Query: 494 VIISGPVCNGAR----PGLGGGALDPGSPVCV--GGRCAPSGQPYTRPGCGXVYKC 345 VII+ VC GA G GALDP P GG +GQPYT GC VY C Sbjct: 26 VIINSSVCLGAAVHDAATSGTGALDPNVPAVPTPGG----AGQPYTGRGCRTVYGC 77
>WIR1A_WHEAT (Q01482) WIR1A protein| Length = 88 Score = 37.7 bits (86), Expect = 0.017 Identities = 25/57 (43%), Positives = 28/57 (49%), Gaps = 7/57 (12%) Frame = -1 Query: 494 VIISGPVCNGARP-----GLGGGALDPGSPVCV--GGRCAPSGQPYTRPGCGXVYKC 345 +II+ VC GA G GALDP P GG +GQPYT GC VY C Sbjct: 28 IIINSSVCLGATAVHDAAASGTGALDPNVPAVPTPGG----AGQPYTGRGCRTVYGC 80
>DGKQ_HUMAN (P52824) Diacylglycerol kinase theta (EC 2.7.1.107) (Diglyceride| kinase theta) (DGK-theta) (DAG kinase theta) Length = 942 Score = 32.0 bits (71), Expect = 0.92 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 5/34 (14%) Frame = -1 Query: 467 GARPGLGGGALDPGSPVC-----VGGRCAPSGQP 381 GAR LGGG+ PGSP C GGR P P Sbjct: 8 GARAWLGGGSPRPGSPACSPVLGSGGRARPGPGP 41
>SFR15_HUMAN (O95104) Splicing factor, arginine/serine-rich 15 (CTD-binding| SR-like protein RA4) Length = 1147 Score = 30.8 bits (68), Expect = 2.1 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = -1 Query: 467 GARPGLGGGALDPGSPVCVGGRCAPSGQPYTRP 369 G PGLGG PG P GR P QP +P Sbjct: 919 GGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQP 951
>POLG_MCFA (P33515) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3341 Score = 30.4 bits (67), Expect = 2.7 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Frame = -2 Query: 436 WTPVVLCASVDGAHHLASPTLALGA---APCTSAHQVLSPSARRPRLPNNGVIALPRRGC 266 W V C+ HH +L G APC ++VL R RL GV+++ C Sbjct: 3143 WEKVEFCS-----HHYHEMSLKDGRIIIAPCRHENEVLG----RSRLQKGGVVSISESAC 3193 Query: 265 MALSCSQ 245 MA + +Q Sbjct: 3194 MAKAYAQ 3200
>TTP_BOVIN (P53781) Tristetraproline (TTP) (Zinc finger protein 36 homolog)| (Zfp-36) (TIS11A protein) (TIS11) Length = 324 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/50 (26%), Positives = 20/50 (40%) Frame = +2 Query: 299 VGEAGSAGARAEHLVGTCTRXRTQGECRAGQMVRTVHRRTQDYRGPEHHH 448 +GE A ++ C + QG C G +H ++D P H H Sbjct: 128 LGELRQASRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPH 177
>GALT9_DROME (Q8MRC9) Putative polypeptide N-acetylgalactosaminyltransferase 9| (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 9) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 9) (pp-GaNTase 9) Length = 650 Score = 30.0 bits (66), Expect = 3.5 Identities = 12/30 (40%), Positives = 19/30 (63%) Frame = -1 Query: 467 GARPGLGGGALDPGSPVCVGGRCAPSGQPY 378 G+ PG+GGGA G P+ + R P+G+ + Sbjct: 50 GSAPGVGGGAGGLGDPIALALRNEPAGEDF 79
>RS3_LISMO (P66548) 30S ribosomal protein S3| Length = 218 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 189 VRPHGMILGSV*DPDSNWYCEQDRA 263 V P GM +G + D DS WY E+D A Sbjct: 5 VHPIGMRIGVIRDWDSKWYAEKDYA 29
>RS3_LISMF (Q71WF2) 30S ribosomal protein S3| Length = 218 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 189 VRPHGMILGSV*DPDSNWYCEQDRA 263 V P GM +G + D DS WY E+D A Sbjct: 5 VHPIGMRIGVIRDWDSKWYAEKDYA 29
>RS3_LISIN (P66549) 30S ribosomal protein S3| Length = 218 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 189 VRPHGMILGSV*DPDSNWYCEQDRA 263 V P GM +G + D DS WY E+D A Sbjct: 5 VHPIGMRIGVIRDWDSKWYAEKDYA 29
>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor| Length = 3718 Score = 29.6 bits (65), Expect = 4.6 Identities = 16/42 (38%), Positives = 19/42 (45%) Frame = -1 Query: 485 SGPVCNGARPGLGGGALDPGSPVCVGGRCAPSGQPYTRPGCG 360 +GP C PG G AL PG+ C C+P G P G Sbjct: 2001 TGPHCERCAPGFYGNALLPGN--CTRCDCSPCGTETCDPQSG 2040
>STB5L_BRARE (Q5SQE2) Syntaxin-binding protein 5-like| Length = 1159 Score = 28.9 bits (63), Expect = 7.8 Identities = 19/62 (30%), Positives = 24/62 (38%) Frame = -2 Query: 394 HLASPTLALGAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSYTE 215 H SPT + PC S + PRL G P R + +C + L S TE Sbjct: 730 HCTSPT----SQPCPSGRARVPGGPEGPRLARRGPGRPPFRKAQSAACMEVSLPVSSLTE 785 Query: 214 PN 209 N Sbjct: 786 EN 787
>CT151_HUMAN (Q8NC74) Protein C20orf151| Length = 664 Score = 28.9 bits (63), Expect = 7.8 Identities = 20/62 (32%), Positives = 25/62 (40%) Frame = -2 Query: 400 AHHLASPTLALGAAPCTSAHQVLSPSARRPRLPNNGVIALPRRGCMALSCSQYQLLSGSY 221 A H ASP + P T + Q LS + R+P + P L SQ L S Sbjct: 469 AAHTASPEPPTQSGPLTRSPQALSNGTKGTRVPEQEEASTPMDPSRPLPGSQLSLSSPGS 528 Query: 220 TE 215 TE Sbjct: 529 TE 530
>MYSC_ACACA (P10569) Myosin IC heavy chain| Length = 1168 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = -1 Query: 482 GPVCNGA---RPGLGGGALDPGSPVCVGGRCAPSGQP 381 GP +GA RP GGG G P GGR +PSG P Sbjct: 937 GPSPSGAVSPRPSPGGGG---GGPSPFGGRPSPSGPP 970 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,216,129 Number of Sequences: 219361 Number of extensions: 1614560 Number of successful extensions: 4577 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4251 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4567 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
