ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd3a10 |
|---|---|
| Clone Library Name | barley_pub |
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 133 bits (335), Expect = 3e-31 Identities = 62/80 (77%), Positives = 75/80 (93%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +FR+YVGNLPW VD+ RL +LFSEHGKVV+ARVVYDR+TGRSRGFGFVTM+ +EL++AI Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302 Query: 343 AALDGQSLEGRALRVNVAEE 284 +ALDGQ+LEGRA+RVNVAEE Sbjct: 303 SALDGQNLEGRAIRVNVAEE 322 Score = 69.3 bits (168), Expect = 6e-12 Identities = 34/76 (44%), Positives = 49/76 (64%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VGNL + V+ L LF + G V A V+Y+R+T +SRGFGFVTM+S +E + A+ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 337 LDGQSLEGRALRVNVA 290 + L GR L VN A Sbjct: 211 FNRYDLNGRLLTVNKA 226
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 133 bits (334), Expect = 4e-31 Identities = 62/80 (77%), Positives = 73/80 (91%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 S+RIYVGN+PW +DD+RL +LFSEHGKVV ARVVYDR+TGRSRGFGFVTMAS+ E+ DAI Sbjct: 229 SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAI 288 Query: 343 AALDGQSLEGRALRVNVAEE 284 A LDGQSL+GR +RVNVAE+ Sbjct: 289 ANLDGQSLDGRTIRVNVAED 308 Score = 74.3 bits (181), Expect = 2e-13 Identities = 36/76 (47%), Positives = 50/76 (65%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VGNLP+ VD L LF + G V A V+Y+RDT +SRGFGFVTM++ EE + A+ Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196 Query: 337 LDGQSLEGRALRVNVA 290 + + GR L VN A Sbjct: 197 YNRYDVNGRLLTVNKA 212
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 130 bits (328), Expect = 2e-30 Identities = 64/84 (76%), Positives = 74/84 (88%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D S R+YVGNLPW VD SRL +LFSEHGKVV ARVV DR+TGRSRGFGFVTM+S+ E+ Sbjct: 144 DFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEV 203 Query: 355 DDAIAALDGQSLEGRALRVNVAEE 284 +DAIAALDGQ+L+GRA+RVNVAEE Sbjct: 204 NDAIAALDGQTLDGRAVRVNVAEE 227 Score = 79.3 bits (194), Expect = 6e-15 Identities = 37/76 (48%), Positives = 53/76 (69%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VGNLP+ VD +L +F G V A V+Y+R+T RSRGFGFVTM++ EE + A+ Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 337 LDGQSLEGRALRVNVA 290 L+G ++GR L VN A Sbjct: 116 LNGYDMDGRQLTVNKA 131
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 124 bits (311), Expect = 2e-28 Identities = 55/80 (68%), Positives = 72/80 (90%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 ++RIYVGN+PW +DD+RL ++FSEHGKVV ARVV+DR++GRSRGFGFVTM+S+ E+ +AI Sbjct: 190 TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAI 249 Query: 343 AALDGQSLEGRALRVNVAEE 284 A LDGQ+L+GR +RVN AEE Sbjct: 250 ANLDGQTLDGRTIRVNAAEE 269 Score = 77.0 bits (188), Expect = 3e-14 Identities = 37/76 (48%), Positives = 50/76 (65%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VGNLP+ +D L +LF + G V A V+Y+R+T RSRGFGFVTM++ EE D A+ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVEL 157 Query: 337 LDGQSLEGRALRVNVA 290 L GR L VN A Sbjct: 158 YSQYDLNGRLLTVNKA 173
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 112 bits (279), Expect = 9e-25 Identities = 55/85 (64%), Positives = 68/85 (80%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 R SS R+YVGNL W VDD L ELFSE G VVDA+VVYDRD+GRSRGFGFVT +S +E Sbjct: 201 RSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKE 260 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 ++DAI +L+G L+GR++RV+ AEE Sbjct: 261 VNDAIDSLNGVDLDGRSIRVSAAEE 285 Score = 80.1 bits (196), Expect = 4e-15 Identities = 37/74 (50%), Positives = 53/74 (71%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VGNLP+ VD + L LF G V V+YD+ TGRSRGFGFVTM+++EE++ A Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 337 LDGQSLEGRALRVN 296 +G ++GRA+RVN Sbjct: 148 FNGYEIDGRAIRVN 161
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 111 bits (277), Expect = 1e-24 Identities = 55/85 (64%), Positives = 68/85 (80%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 R SS R+YVGNL W VDD L ELFSE G VVDA+VVYDRD+GRSRGFGFVT +S +E Sbjct: 202 RSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKE 261 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 ++DAI +L+G L+GR++RV+ AEE Sbjct: 262 VNDAIDSLNGIDLDGRSIRVSAAEE 286 Score = 78.6 bits (192), Expect = 1e-14 Identities = 36/74 (48%), Positives = 53/74 (71%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VGNLP+ VD + L LF G V V+YD+ +GRSRGFGFVTM+++EE++ A Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 337 LDGQSLEGRALRVN 296 +G ++GRA+RVN Sbjct: 149 FNGYEIDGRAIRVN 162
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 108 bits (270), Expect = 9e-24 Identities = 54/80 (67%), Positives = 64/80 (80%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 SS R+YVGNL W VD L LFSE GKVVDA+VVYDRD+GRSRGFGFVT +S EE+++A Sbjct: 186 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 245 Query: 346 IAALDGQSLEGRALRVNVAE 287 I +LDG L GRA+RV+ AE Sbjct: 246 IESLDGVDLNGRAIRVSPAE 265 Score = 86.7 bits (213), Expect = 4e-17 Identities = 42/81 (51%), Positives = 55/81 (67%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 R+ +I+VGNLP+ D + L ELF G V V+YD+ TGRSRGFGFVTM+S+EE Sbjct: 81 RNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 358 LDDAIAALDGQSLEGRALRVN 296 ++ A +G L+GRALRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 108 bits (270), Expect = 9e-24 Identities = 54/80 (67%), Positives = 64/80 (80%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 SS R+YVGNL W VD L LFSE GKVVDA+VVYDRD+GRSRGFGFVT +S EE+++A Sbjct: 192 SSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNA 251 Query: 346 IAALDGQSLEGRALRVNVAE 287 I +LDG L GRA+RV+ AE Sbjct: 252 IESLDGVDLNGRAIRVSPAE 271 Score = 82.8 bits (203), Expect = 6e-16 Identities = 41/81 (50%), Positives = 54/81 (66%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 R+ +I+VGNL + D + L ELF G V V+YD+ TGRSRGFGFVTM+S+EE Sbjct: 81 RNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 358 LDDAIAALDGQSLEGRALRVN 296 ++ A +G L+GRALRVN Sbjct: 141 VEAACQQFNGYELDGRALRVN 161
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 107 bits (266), Expect = 3e-23 Identities = 51/82 (62%), Positives = 64/82 (78%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +GS R+YVGNL W VDD L LFSE GKVV+ARV+YDRD+GRS+GFGFVT S +E+ Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259 Query: 352 DAIAALDGQSLEGRALRVNVAE 287 +AI +LDG L+GR +RV+ AE Sbjct: 260 NAIKSLDGADLDGRQIRVSEAE 281 Score = 81.6 bits (200), Expect = 1e-15 Identities = 38/77 (49%), Positives = 53/77 (68%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 + +++VGNLP+ VD ++L +LF G V V+YD+ TGRSRGFGFVTM+S E++ A Sbjct: 89 ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148 Query: 346 IAALDGQSLEGRALRVN 296 +G L+GR LRVN Sbjct: 149 AQQFNGYELDGRPLRVN 165
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 105 bits (263), Expect = 6e-23 Identities = 50/82 (60%), Positives = 65/82 (79%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 SGS R+YVGNL W VDD L LF+E GKVV+ARV+YDRD+GRS+GFGFVT++S +E+ Sbjct: 253 SGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312 Query: 352 DAIAALDGQSLEGRALRVNVAE 287 AI +L+G L+GR +RV+ AE Sbjct: 313 KAINSLNGADLDGRQIRVSEAE 334 Score = 76.6 bits (187), Expect = 4e-14 Identities = 36/74 (48%), Positives = 50/74 (67%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VGNL + VD ++L +LF G V V+YD+ TGRSRGFGFVTM++ E++ A Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 337 LDGQSLEGRALRVN 296 +G EGR LRVN Sbjct: 160 FNGYEFEGRPLRVN 173
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 87.8 bits (216), Expect = 2e-17 Identities = 37/78 (47%), Positives = 57/78 (73%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 +R +VG L W DD L FS++G+V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 340 ALDGQSLEGRALRVNVAE 287 ++GQ L+GR++ VN A+ Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 86.3 bits (212), Expect = 5e-17 Identities = 36/78 (46%), Positives = 56/78 (71%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 +R +VG L W DD L F+++G V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67 Query: 340 ALDGQSLEGRALRVNVAE 287 ++GQ L+GR++ VN A+ Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 85.1 bits (209), Expect = 1e-16 Identities = 36/78 (46%), Positives = 56/78 (71%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 +R +VG L W D+ L FS+ G++VD++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 8 YRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIE 67 Query: 340 ALDGQSLEGRALRVNVAE 287 ++GQ L+GR++ VN A+ Sbjct: 68 GMNGQDLDGRSITVNEAQ 85
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 83.6 bits (205), Expect = 3e-16 Identities = 35/78 (44%), Positives = 55/78 (70%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 +R +VG L W D+ L FS+ G+V+D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65 Query: 340 ALDGQSLEGRALRVNVAE 287 ++G+ L+GR + VN A+ Sbjct: 66 EMNGKELDGRTITVNEAQ 83
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 83.2 bits (204), Expect = 4e-16 Identities = 40/77 (51%), Positives = 52/77 (67%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+YVGNLP+ + S+L E+F+E G V + +VYDR T RSRGF FVTM S EE +AI Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 337 LDGQSLEGRALRVNVAE 287 DG + GR ++VN E Sbjct: 175 FDGSQVGGRTVKVNFPE 191 Score = 74.7 bits (182), Expect = 2e-13 Identities = 34/79 (43%), Positives = 52/79 (65%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S ++YV NL W + L + F++ + A+V+YDR +GRSRGFGF+T +S E ++ A Sbjct: 215 SPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSA 274 Query: 346 IAALDGQSLEGRALRVNVA 290 + ++ LEGR LR+NVA Sbjct: 275 LDTMNEVELEGRPLRLNVA 293
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 83.2 bits (204), Expect = 4e-16 Identities = 35/78 (44%), Positives = 54/78 (69%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 +R +VG L W +D L + FS+ G + D++++ DR+TGRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65 Query: 340 ALDGQSLEGRALRVNVAE 287 ++GQ L+GR + VN A+ Sbjct: 66 GMNGQELDGRNITVNEAQ 83
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 81.6 bits (200), Expect = 1e-15 Identities = 35/78 (44%), Positives = 57/78 (73%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 +R +VG L W ++ L + F+ G+V+D++V+ DR+TGRSRGFGFVT +S++ + DAI Sbjct: 8 YRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIE 67 Query: 340 ALDGQSLEGRALRVNVAE 287 ++G+ L+GR + VN A+ Sbjct: 68 NMNGKELDGRNITVNQAQ 85
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 80.5 bits (197), Expect = 3e-15 Identities = 37/80 (46%), Positives = 53/80 (66%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 S ++++G L W DD+ L + F+ G VVDA+V+ DR+TGRSRGFGFV + AI Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93 Query: 343 AALDGQSLEGRALRVNVAEE 284 + +DG+ L GR +RVN A + Sbjct: 94 SEMDGKELNGRHIRVNPAND 113
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 80.5 bits (197), Expect = 3e-15 Identities = 34/78 (43%), Positives = 54/78 (69%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 +R +VG L W +D L FS+ G V+D++++ DR++GRSRGFGFVT ++ + DAI Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65 Query: 340 ALDGQSLEGRALRVNVAE 287 ++G+ L+GR + VN A+ Sbjct: 66 EMNGKELDGRVITVNEAQ 83
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 79.7 bits (195), Expect = 5e-15 Identities = 34/78 (43%), Positives = 55/78 (70%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 +R +VG L W + L F+ +G+++D++V+ DR+TGRSRGFGFVT +S+ + DAI Sbjct: 8 YRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIE 67 Query: 340 ALDGQSLEGRALRVNVAE 287 ++G+ L+GR + VN A+ Sbjct: 68 NMNGKELDGRNITVNQAQ 85
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 72.8 bits (177), Expect = 6e-13 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 334 DGQSLEGRALRV-NVAEE 284 +G+ GRALRV N A E Sbjct: 78 NGREFSGRALRVDNAASE 95
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 72.8 bits (177), Expect = 6e-13 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 334 DGQSLEGRALRV-NVAEE 284 +G+ GRALRV N A E Sbjct: 78 NGREFSGRALRVDNAASE 95
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 72.4 bits (176), Expect = 7e-13 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 334 DGQSLEGRALRV-NVAEE 284 +G+ GRALRV N A E Sbjct: 78 NGREFSGRALRVDNAASE 95
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 72.4 bits (176), Expect = 7e-13 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 334 DGQSLEGRALRV-NVAEE 284 +G+ GRALRV N A E Sbjct: 78 NGREFSGRALRVDNAASE 95
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 72.4 bits (176), Expect = 7e-13 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 334 DGQSLEGRALRV-NVAEE 284 +G+ GRALRV N A E Sbjct: 78 NGREFSGRALRVDNAASE 95
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 72.4 bits (176), Expect = 7e-13 Identities = 35/78 (44%), Positives = 52/78 (66%), Gaps = 1/78 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGN+P++ + +L ++FSE G VV R+VYDR+TG+ +G+GF QE A+ L Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77 Query: 334 DGQSLEGRALRV-NVAEE 284 +G+ GRALRV N A E Sbjct: 78 NGREFSGRALRVDNAASE 95
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 72.0 bits (175), Expect = 1e-12 Identities = 36/79 (45%), Positives = 53/79 (67%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S +++Y+GNL V + L + FSE GKV+ A+V T +S GFGFV+ +S+EE++ A Sbjct: 182 SPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAA 241 Query: 346 IAALDGQSLEGRALRVNVA 290 I AL+ LEG+ +RVN A Sbjct: 242 IQALNNSVLEGQKIRVNKA 260 Score = 70.5 bits (171), Expect = 3e-12 Identities = 33/84 (39%), Positives = 53/84 (63%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D + R+YVGN+P +++ L + EHG + A V+YD+ +GRSR FGFVTM + E+ Sbjct: 79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDA 138 Query: 355 DDAIAALDGQSLEGRALRVNVAEE 284 + I L+ + GR ++VN+ E+ Sbjct: 139 NAVIEKLNDTEIGGRKIKVNITEK 162
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 71.2 bits (173), Expect = 2e-12 Identities = 34/81 (41%), Positives = 52/81 (64%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S +++VG L + D+ L + FS G + + VV DR+T RSRGFGF+T + E Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 352 DAIAALDGQSLEGRALRVNVA 290 DA+ A++G+SL+GR +RV+ A Sbjct: 62 DAMRAMNGESLDGRQIRVDHA 82
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.5 bits (171), Expect = 3e-12 Identities = 31/76 (40%), Positives = 56/76 (73%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 337 LDGQSLEGRALRVNVA 290 ++G+S++GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 70.5 bits (171), Expect = 3e-12 Identities = 31/76 (40%), Positives = 56/76 (73%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 337 LDGQSLEGRALRVNVA 290 ++G+S++GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.5 bits (171), Expect = 3e-12 Identities = 31/76 (40%), Positives = 56/76 (73%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 337 LDGQSLEGRALRVNVA 290 ++G+S++GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.5 bits (171), Expect = 3e-12 Identities = 31/76 (40%), Positives = 56/76 (73%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 337 LDGQSLEGRALRVNVA 290 ++G+S++GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 70.5 bits (171), Expect = 3e-12 Identities = 31/76 (40%), Positives = 56/76 (73%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L + ++ L ++FS++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66 Query: 337 LDGQSLEGRALRVNVA 290 ++G+S++GR +RV+ A Sbjct: 67 MNGKSVDGRQIRVDQA 82
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 69.7 bits (169), Expect = 5e-12 Identities = 36/76 (47%), Positives = 49/76 (64%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 IYVGNL + V ++ L +F+E+G V ++ DR+TGR RGFGFV + + E AI AL Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 334 DGQSLEGRALRVNVAE 287 DG GR L+VN A+ Sbjct: 63 DGAEWMGRDLKVNKAK 78
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 68.6 bits (166), Expect = 1e-11 Identities = 29/76 (38%), Positives = 56/76 (73%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ ++ L + F+++G++ + VV DR+T RSRGFGFVT + ++ DA+ A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65 Query: 337 LDGQSLEGRALRVNVA 290 ++G+S++GR +RV+ A Sbjct: 66 MNGKSVDGRQIRVDQA 81
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 68.2 bits (165), Expect = 1e-11 Identities = 32/81 (39%), Positives = 49/81 (60%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S +F ++VG+L VDD L F + + V++D TG SRG+GFV+ SQ++ Sbjct: 157 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 216 Query: 352 DAIAALDGQSLEGRALRVNVA 290 +A+ ++ GQ L GR LR+N A Sbjct: 217 NAMDSMQGQDLNGRPLRINWA 237 Score = 37.0 bits (84), Expect = 0.035 Identities = 17/75 (22%), Positives = 40/75 (53%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YVGNL + + L + F G + + +++ D++ ++ + FV + + A+ L Sbjct: 76 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTL 134 Query: 334 DGQSLEGRALRVNVA 290 +G+ +E +++N A Sbjct: 135 NGKQIENNIVKINWA 149 Score = 32.0 bits (71), Expect = 1.1 Identities = 20/76 (26%), Positives = 35/76 (46%) Frame = -1 Query: 511 YVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALD 332 Y+GN+P ++ L+ LF G ++D + + +G F+ + E+ I AL Sbjct: 343 YIGNIPHFATEADLIPLFQNFGFILDFKHYPE------KGCCFIKYDTHEQAAVCIVALA 396 Query: 331 GQSLEGRALRVNVAEE 284 +GR LR +E Sbjct: 397 NFPFQGRNLRTGWGKE 412
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 67.8 bits (164), Expect = 2e-11 Identities = 33/81 (40%), Positives = 51/81 (62%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S +++VG L + D+ L + FS G + + VV DR+T RSRGFGF+T + E Sbjct: 2 SSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHAS 61 Query: 352 DAIAALDGQSLEGRALRVNVA 290 A+ A++G+SL+GR +RV+ A Sbjct: 62 VAMRAMNGESLDGRQIRVDHA 82
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 67.8 bits (164), Expect = 2e-11 Identities = 33/80 (41%), Positives = 52/80 (65%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 S ++Y+G L D+ L + FS V +ARV+ ++ TGRSRG+GFV S++ + AI Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89 Query: 343 AALDGQSLEGRALRVNVAEE 284 +A++GQ L G + VNVA++ Sbjct: 90 SAMNGQELNGFNISVNVAKD 109
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 67.0 bits (162), Expect = 3e-11 Identities = 30/83 (36%), Positives = 52/83 (62%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 +DS + ++VG L W VDD L + F E+G +V ARV+ D +GRS+G+G+V + E Sbjct: 257 QDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEA 316 Query: 358 LDDAIAALDGQSLEGRALRVNVA 290 A+AA + ++GR + ++++ Sbjct: 317 AKAAVAANGTKEIDGRMVNLDLS 339 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/79 (27%), Positives = 39/79 (49%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S S ++VGNL + + L F G + R+ D +GR +GFG+VT + + Sbjct: 362 SEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAK 421 Query: 352 DAIAALDGQSLEGRALRVN 296 + ++G + GR R++ Sbjct: 422 KCV-EMNGHFIAGRPCRLD 439
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 65.9 bits (159), Expect = 7e-11 Identities = 31/83 (37%), Positives = 53/83 (63%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 +D+ + F ++VG+L ++ + F+ GK+ DARVV D TG+S+G+GFV+ ++ + Sbjct: 108 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 167 Query: 358 LDDAIAALDGQSLEGRALRVNVA 290 ++AI + GQ L GR +R N A Sbjct: 168 AENAIVHMGGQWLGGRQIRTNWA 190 Score = 38.1 bits (87), Expect = 0.016 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 15/97 (15%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR----SRGFG------ 386 D G +YVGNL V + +++LFS+ G +++ ++ R S GF Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63 Query: 385 -----FVTMASQEELDDAIAALDGQSLEGRALRVNVA 290 FV + A+AA++G+ + G+ ++VN A Sbjct: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 100
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 65.9 bits (159), Expect = 7e-11 Identities = 31/83 (37%), Positives = 53/83 (63%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 +D+ + F ++VG+L ++ + F+ GK+ DARVV D TG+S+G+GFV+ ++ + Sbjct: 91 KDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLD 150 Query: 358 LDDAIAALDGQSLEGRALRVNVA 290 ++AI + GQ L GR +R N A Sbjct: 151 AENAIVHMGGQWLGGRQIRTNWA 173 Score = 39.7 bits (91), Expect = 0.005 Identities = 22/82 (26%), Positives = 44/82 (53%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D G +YVGNL V + +++LFS+ G +++ + + + + FV + Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDA 61 Query: 355 DDAIAALDGQSLEGRALRVNVA 290 A+AA++G+ + G+ ++VN A Sbjct: 62 AAALAAMNGRKILGKEVKVNWA 83
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 64.7 bits (156), Expect = 2e-10 Identities = 28/75 (37%), Positives = 47/75 (62%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I+VG L W +DD L + F G V+ ARV+Y+R T RSRG+G+V ++ + AI + Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 334 DGQSLEGRALRVNVA 290 G+ ++GR + +++ Sbjct: 230 QGKEIDGRPINCDMS 244 Score = 58.2 bits (139), Expect = 1e-08 Identities = 26/79 (32%), Positives = 49/79 (62%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S S +++GNL + D + ELF++HG+VV R+ +T + +GFG+V ++ E+ Sbjct: 263 SEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAK 322 Query: 352 DAIAALDGQSLEGRALRVN 296 A+ AL G+ ++ R +R++ Sbjct: 323 KALDALQGEYIDNRPVRLD 341
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 64.7 bits (156), Expect = 2e-10 Identities = 31/77 (40%), Positives = 48/77 (62%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N +DD RL E+FS G + +V+ D DTGRSRGFGFV + EE A++ + Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ + GR + V A++ Sbjct: 252 NGKEVNGRMIYVGRAQK 268 Score = 54.3 bits (129), Expect = 2e-07 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL + FS +G + A+V+ + G S+GFGFV +S EE A+ + Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE--EXXXXXXXXRYIWRCTTTRLL 224 +G+ + + L V +A+ E +Y+ R T R + Sbjct: 354 NGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAM 392 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/72 (33%), Positives = 39/72 (54%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +++ NL +D+ L + FS G ++ +VV D SRG+GFV +QE + AI + Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158 Query: 334 DGQSLEGRALRV 299 +G L R + V Sbjct: 159 NGMLLNDRKVFV 170
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 63.2 bits (152), Expect = 5e-10 Identities = 30/77 (38%), Positives = 48/77 (62%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N +DD RL E+FS G + +V+ D D+GRSRGFGFV + EE A++ + Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ + GR + V A++ Sbjct: 252 NGKEVNGRMIYVGRAQK 268 Score = 52.0 bits (123), Expect = 1e-06 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL + F +G + A+V+ + G S+GFGFV +S EE A+ + Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE--EXXXXXXXXRYIWRCTTTRLL 224 +G+ + + L V +A+ E +Y+ R T R + Sbjct: 354 NGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAM 392 Score = 42.7 bits (99), Expect = 6e-04 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +++ NL +D+ L + FS G ++ +VV D SRG+GFV + E + AI + Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158 Query: 334 DGQSLEGRALRV 299 +G L R + V Sbjct: 159 NGMLLNDRKVFV 170
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 62.8 bits (151), Expect = 6e-10 Identities = 26/58 (44%), Positives = 45/58 (77%) Frame = -1 Query: 460 FSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 287 FS +G+V++++++ DR+T RSRGFGFVT +++E + AI ++G+ L+GR + VN A+ Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 62.8 bits (151), Expect = 6e-10 Identities = 26/76 (34%), Positives = 52/76 (68%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT+ S + DA Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 337 LDGQSLEGRALRVNVA 290 ++G+SL+G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 62.8 bits (151), Expect = 6e-10 Identities = 26/76 (34%), Positives = 51/76 (67%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT S + DA Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 337 LDGQSLEGRALRVNVA 290 ++G+SL+G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 62.8 bits (151), Expect = 6e-10 Identities = 31/81 (38%), Positives = 51/81 (62%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S + F ++VG+L Q+ + F+ G++ DARVV D TG+S+G+GFV+ ++ + + Sbjct: 102 SQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161 Query: 352 DAIAALDGQSLEGRALRVNVA 290 +AI + GQ L GR +R N A Sbjct: 162 NAIQQMGGQWLGGRQIRTNWA 182 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/75 (29%), Positives = 43/75 (57%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YVGNL V ++ +++LFS+ G + +++ DT + + FV A+AA+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMI--MDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 334 DGQSLEGRALRVNVA 290 +G+ + G+ ++VN A Sbjct: 67 NGRKIMGKEVKVNWA 81
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 61.2 bits (147), Expect = 2e-09 Identities = 30/85 (35%), Positives = 49/85 (57%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 + +G R+YVG+L + + + L +F GK+ + ++ D DTGRS+G+GF+T + E Sbjct: 257 KGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSEC 316 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 A+ L+G L GR +RV E Sbjct: 317 ARRALEQLNGFELAGRPMRVGHVTE 341 Score = 37.0 bits (84), Expect = 0.035 Identities = 22/62 (35%), Positives = 34/62 (54%) Frame = -1 Query: 472 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 293 L + FS GKV D R++ DR++ RS+G +V + + AI L GQ L G + V Sbjct: 182 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 240 Query: 292 AE 287 ++ Sbjct: 241 SQ 242
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 61.2 bits (147), Expect = 2e-09 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 4/125 (3%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I+VG LP+ D+ L + F G + +A V+ DR TG+SRG+GFVTMA + D A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKD 92 Query: 337 LDGQSLEGRALRVNV----AEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTGLDPIIIL 170 ++GR VN+ A+ + + T L+++ + TP P I+ Sbjct: 93 -PNPIIDGRKANVNLAYLGAKPRSLQTGFAVGVQQLHPT-LIQRTYGLTPHYIYPPAIVQ 150 Query: 169 PSILV 155 PS+++ Sbjct: 151 PSVVI 155
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 61.2 bits (147), Expect = 2e-09 Identities = 30/81 (37%), Positives = 50/81 (61%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S F ++VG+L ++ + F+ G++ DARVV D TG+S+G+GFV+ ++ + + Sbjct: 102 SQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAE 161 Query: 352 DAIAALDGQSLEGRALRVNVA 290 +AI + GQ L GR +R N A Sbjct: 162 NAIQQMGGQWLGGRQIRTNWA 182 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/75 (29%), Positives = 43/75 (57%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YVGNL V ++ +++LFS+ G + +++ DT + + FV A+AA+ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMI--MDTAGNDPYCFVEFHEHRHAAAALAAM 66 Query: 334 DGQSLEGRALRVNVA 290 +G+ + G+ ++VN A Sbjct: 67 NGRKIMGKEVKVNWA 81
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 60.8 bits (146), Expect = 2e-09 Identities = 29/77 (37%), Positives = 47/77 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N +DD RL E+FS G + +V+ D ++GRSRGFGFV + EE A+ + Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ + GR + V A++ Sbjct: 252 NGKEVNGRMVYVGRAQK 268 Score = 52.8 bits (125), Expect = 6e-07 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL + FS +G + +V+ + G S+GFGFV +S EE A+ + Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE--EXXXXXXXXRYIWRCTTTRLL 224 +G+ + + L V +A+ E +Y+ R T R + Sbjct: 354 NGRIVSTKPLYVALAQRKEERKAILTNQYMQRLATMRAM 392 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/72 (33%), Positives = 39/72 (54%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +++ NL +D+ L + FS G ++ +VV D SRG+GFV +QE + AI + Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158 Query: 334 DGQSLEGRALRV 299 +G L R + V Sbjct: 159 NGMLLNDRKVFV 170
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 60.8 bits (146), Expect = 2e-09 Identities = 25/76 (32%), Positives = 50/76 (65%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L + ++ L +F ++G++V+ ++ DR+T +SRGF FVT S + D Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 337 LDGQSLEGRALRVNVA 290 ++G+SL+G+A++V A Sbjct: 69 MNGKSLDGKAIKVEQA 84
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 60.1 bits (144), Expect = 4e-09 Identities = 32/79 (40%), Positives = 50/79 (63%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +G+ + I+V NL + D+S L +LF G V + +V+ D T + +GFGFVTM + +E Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339 Query: 352 DAIAALDGQSLEGRALRVN 296 AIA+L+G L R L+V+ Sbjct: 340 MAIASLNGYRLGERVLQVS 358 Score = 58.5 bits (140), Expect = 1e-08 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R S +S R +YV LP + + +LFS++G+++ +R++ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDK 175 Query: 367 QEELDDAIAALDGQSLEGRALRVNV 293 + E ++AI L+GQ G A + V Sbjct: 176 RIEAEEAIKGLNGQKPLGAAEPITV 200 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/79 (30%), Positives = 40/79 (50%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S + V LP + LF G + ++V D+ TG+S G+GFV + + D A Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96 Query: 346 IAALDGQSLEGRALRVNVA 290 I L+G L+ + ++V+ A Sbjct: 97 INTLNGLKLQTKTIKVSYA 115
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 60.1 bits (144), Expect = 4e-09 Identities = 32/79 (40%), Positives = 50/79 (63%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +G+ + I+V NL + D+S L +LF G V + +V+ D T + +GFGFVTM + +E Sbjct: 280 AGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 339 Query: 352 DAIAALDGQSLEGRALRVN 296 AIA+L+G L R L+V+ Sbjct: 340 MAIASLNGYRLGERVLQVS 358 Score = 58.2 bits (139), Expect = 1e-08 Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 3/85 (3%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R S +S R +YV LP + + +LFS++G+++ +R++ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175 Query: 367 QEELDDAIAALDGQSLEGRALRVNV 293 + E ++AI L+GQ G A + V Sbjct: 176 RIEAEEAIKGLNGQKPLGAAEPITV 200 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/79 (30%), Positives = 40/79 (50%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S + V LP + LF G + ++V D+ TG+S G+GFV + + D A Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKA 96 Query: 346 IAALDGQSLEGRALRVNVA 290 I L+G L+ + ++V+ A Sbjct: 97 INTLNGLKLQTKTIKVSYA 115
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 60.1 bits (144), Expect = 4e-09 Identities = 27/96 (28%), Positives = 50/96 (52%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 + S R+YVG+L + + + L +F G++ +++ D +TGRS+G+GF+T + E Sbjct: 244 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSEC 303 Query: 358 LDDAIAALDGQSLEGRALRVNVAEEXXXXXXXXRYI 251 A+ L+G L GR ++V E ++ Sbjct: 304 AKKALEQLNGFELAGRPMKVGHVTERTDASSASSFL 339 Score = 36.6 bits (83), Expect = 0.045 Identities = 23/62 (37%), Positives = 33/62 (53%) Frame = -1 Query: 472 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 293 L E FS GKV D R++ DR++ RSRG +V + AI L GQ + G + V Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAI-GLTGQRVLGVPIIVQA 227 Query: 292 AE 287 ++ Sbjct: 228 SQ 229
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 60.1 bits (144), Expect = 4e-09 Identities = 27/96 (28%), Positives = 50/96 (52%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 + S R+YVG+L + + + L +F G++ +++ D +TGRS+G+GF+T + E Sbjct: 244 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSEC 303 Query: 358 LDDAIAALDGQSLEGRALRVNVAEEXXXXXXXXRYI 251 A+ L+G L GR ++V E ++ Sbjct: 304 AKKALEQLNGFELAGRPMKVGHVTERTDASSASSFL 339 Score = 35.8 bits (81), Expect = 0.078 Identities = 22/62 (35%), Positives = 33/62 (53%) Frame = -1 Query: 472 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 293 L E FS GKV D R++ DR++ RS+G +V + AI L GQ + G + V Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GLTGQRVLGVPIIVQA 227 Query: 292 AE 287 ++ Sbjct: 228 SQ 229
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 59.7 bits (143), Expect = 5e-09 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I+VG LP+ D+ L + F G + +A V+ DR TG+SRG+GFVTMA + + A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71 Query: 337 LDGQSLEGRALRVNV----AEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTGLDPIIIL 170 ++GR VN+ A+ + + T L+++ + TP P I+ Sbjct: 72 -PNPIIDGRKANVNLAYLGAKPRSLQTGFAIGVQQLHPT-LIQRTYGLTPHYIYPPAIVQ 129 Query: 169 PSILV 155 PS+++ Sbjct: 130 PSVVI 134
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 59.7 bits (143), Expect = 5e-09 Identities = 30/85 (35%), Positives = 50/85 (58%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 RD + ++V N+ +DD +L ELF E+G +V+ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 A+ L G+S++G+ L V A++ Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQK 276
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 59.7 bits (143), Expect = 5e-09 Identities = 30/85 (35%), Positives = 50/85 (58%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 RD + ++V N+ +DD +L ELF E+G +V+ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 A+ L G+S++G+ L V A++ Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQK 276
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 59.7 bits (143), Expect = 5e-09 Identities = 30/85 (35%), Positives = 50/85 (58%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 RD + ++V N+ +DD +L ELF E+G +V+ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 A+ L G+S++G+ L V A++ Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQK 276
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 59.7 bits (143), Expect = 5e-09 Identities = 30/85 (35%), Positives = 50/85 (58%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 RD + ++V N+ +DD +L ELF E+G +V+ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 A+ L G+S++G+ L V A++ Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQK 276
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 59.7 bits (143), Expect = 5e-09 Identities = 30/85 (35%), Positives = 50/85 (58%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 RD + ++V N+ +DD +L ELF E+G +V+ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 A+ L G+S++G+ L V A++ Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQK 276
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 59.7 bits (143), Expect = 5e-09 Identities = 30/85 (35%), Positives = 50/85 (58%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 RD + ++V N+ +DD +L ELF E+G +V+ D +G+S+GFGFV + E Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEA 251 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 A+ L G+S++G+ L V A++ Sbjct: 252 AQKAVLDLHGKSIDGKVLYVGRAQK 276
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 59.3 bits (142), Expect = 7e-09 Identities = 31/78 (39%), Positives = 49/78 (62%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 350 G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + +E Sbjct: 273 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 332 Query: 349 AIAALDGQSLEGRALRVN 296 AIA+L+G L R L+V+ Sbjct: 333 AIASLNGYRLGDRVLQVS 350 Score = 57.8 bits (138), Expect = 2e-08 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R S +S R +YV LP + L +LFS++G+++ +R++ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175 Query: 367 QEELDDAIAALDGQSLEGRALRVNV 293 + E ++AI L+GQ G + V Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITV 200 Score = 45.8 bits (107), Expect = 7e-05 Identities = 22/70 (31%), Positives = 39/70 (55%) Frame = -1 Query: 499 LPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSL 320 LP + L LF G++ ++V D+ TG+S G+GFV ++ + AI L+G L Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 319 EGRALRVNVA 290 + + ++V+ A Sbjct: 106 QTKTIKVSYA 115
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 59.3 bits (142), Expect = 7e-09 Identities = 31/78 (39%), Positives = 49/78 (62%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 350 G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + +E Sbjct: 273 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 332 Query: 349 AIAALDGQSLEGRALRVN 296 AIA+L+G L R L+V+ Sbjct: 333 AIASLNGYRLGDRVLQVS 350 Score = 57.8 bits (138), Expect = 2e-08 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R S +S R +YV LP + L +LFS++G+++ +R++ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175 Query: 367 QEELDDAIAALDGQSLEGRALRVNV 293 + E ++AI L+GQ G + V Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITV 200 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%) Frame = -1 Query: 535 DSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 367 QEELDDAIAALDGQSLEGRALRVNVA 290 ++ + AI L+G L+ + ++V+ A Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 59.3 bits (142), Expect = 7e-09 Identities = 31/78 (39%), Positives = 49/78 (62%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 350 G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + +E Sbjct: 273 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 332 Query: 349 AIAALDGQSLEGRALRVN 296 AIA+L+G L R L+V+ Sbjct: 333 AIASLNGYRLGDRVLQVS 350 Score = 57.8 bits (138), Expect = 2e-08 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R S +S R +YV LP + L +LFS++G+++ +R++ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175 Query: 367 QEELDDAIAALDGQSLEGRALRVNV 293 + E ++AI L+GQ G + V Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITV 200 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%) Frame = -1 Query: 535 DSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 367 QEELDDAIAALDGQSLEGRALRVNVA 290 ++ + AI L+G L+ + ++V+ A Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYA 115
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 59.3 bits (142), Expect = 7e-09 Identities = 31/78 (39%), Positives = 49/78 (62%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 350 G+ + I+V NL D+S L ++F G V + +V+ D +T + +GFGFVTM + +E Sbjct: 274 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 333 Query: 349 AIAALDGQSLEGRALRVN 296 AIA+L+G L R L+V+ Sbjct: 334 AIASLNGYRLGDRVLQVS 351 Score = 57.8 bits (138), Expect = 2e-08 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R S +S R +YV LP + L +LFS++G+++ +R++ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDK 175 Query: 367 QEELDDAIAALDGQSLEGRALRVNV 293 + E ++AI L+GQ G + V Sbjct: 176 RIEAEEAIKGLNGQKPPGATEPITV 200 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%) Frame = -1 Query: 535 DSG----SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 DSG S + V LP + L LF G++ ++V D+ TG+S G+GFV Sbjct: 30 DSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 89 Query: 367 QEELDDAIAALDGQSLEGRALRVNVA 290 ++ + AI L+G L+ + ++V+ A Sbjct: 90 PKDAEKAINTLNGLRLQTKTIKVSYA 115
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 58.9 bits (141), Expect = 9e-09 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 5/90 (5%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R G S + +YV NLP + D L ++F ++G +V ++ D+ TGR RG FV Sbjct: 179 RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNK 238 Query: 367 QEELDDAIAALDGQSLEG--RALRVNVAEE 284 +EE +AI+AL+ EG + L V +AEE Sbjct: 239 REEAQEAISALNNVIPEGASQPLTVRLAEE 268
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 58.5 bits (140), Expect = 1e-08 Identities = 32/79 (40%), Positives = 50/79 (63%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + +E Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 352 Query: 352 DAIAALDGQSLEGRALRVN 296 AIA+L+G L R L+V+ Sbjct: 353 MAIASLNGYRLGDRVLQVS 371 Score = 58.2 bits (139), Expect = 1e-08 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R S +S R +YV LP + L +LFS++G+++ +R++ D+ TG SRG GF+ Sbjct: 123 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 182 Query: 367 QEELDDAIAALDGQSLEGRALRVNV 293 + E ++AI L+GQ G + V Sbjct: 183 RIEAEEAIKGLNGQKPSGATEPITV 207 Score = 45.8 bits (107), Expect = 7e-05 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 44 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 103 Query: 346 IAALDGQSLEGRALRVNVA 290 I L+G L+ + ++V+ A Sbjct: 104 INTLNGLRLQTKTIKVSYA 122
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 58.5 bits (140), Expect = 1e-08 Identities = 30/79 (37%), Positives = 51/79 (64%), Gaps = 1/79 (1%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 SG++ I+VG+L V +S+L ELF + + A++V+D+ TG S+G+GFV + +E Sbjct: 159 SGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQ 218 Query: 355 DDAIAALDGQSLEGRALRV 299 A++ + G L GRA++V Sbjct: 219 QLALSEMQGVFLNGRAIKV 237
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 58.5 bits (140), Expect = 1e-08 Identities = 32/79 (40%), Positives = 50/79 (63%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + +E Sbjct: 286 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 345 Query: 352 DAIAALDGQSLEGRALRVN 296 AIA+L+G L R L+V+ Sbjct: 346 MAIASLNGYRLGDRVLQVS 364 Score = 58.2 bits (139), Expect = 1e-08 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R S +S R +YV LP + L +LFS++G+++ +R++ D+ TG SRG GF+ Sbjct: 116 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 175 Query: 367 QEELDDAIAALDGQSLEGRALRVNV 293 + E ++AI L+GQ G + V Sbjct: 176 RIEAEEAIKGLNGQKPSGATEPITV 200 Score = 45.8 bits (107), Expect = 7e-05 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 37 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 96 Query: 346 IAALDGQSLEGRALRVNVA 290 I L+G L+ + ++V+ A Sbjct: 97 INTLNGLRLQTKTIKVSYA 115
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 58.5 bits (140), Expect = 1e-08 Identities = 32/79 (40%), Positives = 50/79 (63%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +G+ + I+V NL D+S L +LF G V + +V+ D +T + +GFGFVTM + +E Sbjct: 298 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 357 Query: 352 DAIAALDGQSLEGRALRVN 296 AIA+L+G L R L+V+ Sbjct: 358 MAIASLNGYRLGDRVLQVS 376 Score = 58.2 bits (139), Expect = 1e-08 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 3/85 (3%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R S +S R +YV LP + L +LFS++G+++ +R++ D+ TG SRG GF+ Sbjct: 128 RPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDK 187 Query: 367 QEELDDAIAALDGQSLEGRALRVNV 293 + E ++AI L+GQ G + V Sbjct: 188 RIEAEEAIKGLNGQKPSGATEPITV 212 Score = 45.8 bits (107), Expect = 7e-05 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S + V LP + LF G++ ++V D+ TG+S G+GFV ++ + A Sbjct: 49 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 108 Query: 346 IAALDGQSLEGRALRVNVA 290 I L+G L+ + ++V+ A Sbjct: 109 INTLNGLRLQTKTIKVSYA 127
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 58.2 bits (139), Expect = 1e-08 Identities = 28/77 (36%), Positives = 47/77 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N +DD RL E F ++G + +V+ D D G+SRGFGFV+ E+ A+ + Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ L G+A+ V A++ Sbjct: 252 NGKDLNGKAIFVGRAQK 268 Score = 52.8 bits (125), Expect = 6e-07 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 2/98 (2%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL + F+ G + A+V+ + GRS+GFGFV +S EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE--EXXXXXXXXRYIWRCTTTRL 227 +G+ + + L V +A+ E +Y+ R + R+ Sbjct: 354 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRV 391 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158 Query: 334 DGQSLEGRALRV 299 +G L R + V Sbjct: 159 NGMLLNDRKVFV 170
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 58.2 bits (139), Expect = 1e-08 Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 I+VGNL +VD+ L + FS G ++ +++ D D+G S+GF F+ AS E D A+ A Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161 Query: 337 LDGQSLEGRALRVNVA 290 ++GQ L RA+ V+ A Sbjct: 162 MNGQFLCNRAITVSYA 177 Score = 53.5 bits (127), Expect = 4e-07 Identities = 31/75 (41%), Positives = 42/75 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 IYVG L +V +S L EL + G VV + DR T +GFGFV +E+ D AI L Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 334 DGQSLEGRALRVNVA 290 + L G+ ++VN A Sbjct: 75 NMIKLYGKPIKVNKA 89
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 58.2 bits (139), Expect = 1e-08 Identities = 27/77 (35%), Positives = 49/77 (63%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N +VDD L ELFS+ GK + +V+ D + G+S+GFGFV+ E+ + A+ + Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ + G+ + V A++ Sbjct: 252 NGKEISGKIIFVGRAQK 268 Score = 52.8 bits (125), Expect = 6e-07 Identities = 27/76 (35%), Positives = 46/76 (60%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ NL +DD +L + FS G + A+V+ + GRS+GFGFV +S EE A+ + Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE 287 +G+ + + L V +A+ Sbjct: 354 NGRIVGSKPLYVALAQ 369
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 57.8 bits (138), Expect = 2e-08 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R G S + +YV NLP + D L ++F ++G +V ++ D+ TG+ RG FV Sbjct: 162 RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNK 221 Query: 367 QEELDDAIAALDGQSLEG--RALRVNVAEE 284 +EE +AI+AL+ EG + L V +AEE Sbjct: 222 REEAQEAISALNNVIPEGASQPLTVRLAEE 251
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 57.8 bits (138), Expect = 2e-08 Identities = 31/83 (37%), Positives = 49/83 (59%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D S +YV NL + D +L E+FS G V ++V+ D + G S+G GFV A+ EE Sbjct: 313 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEA 371 Query: 355 DDAIAALDGQSLEGRALRVNVAE 287 +A++ L G+ +E + L V +A+ Sbjct: 372 TEAMSQLSGKMIESKPLYVAIAQ 394 Score = 48.9 bits (115), Expect = 9e-06 Identities = 28/80 (35%), Positives = 44/80 (55%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 R SG+ I++ NL +D L + FS G +V +V D +G+S+G+GFV A++E Sbjct: 119 RRSGAG-NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEES 176 Query: 358 LDDAIAALDGQSLEGRALRV 299 AI L+G L + + V Sbjct: 177 AQKAIEKLNGMLLNDKQVYV 196 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/77 (32%), Positives = 42/77 (54%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL D L F E+GK+ A V+ D + G+S+GFGFV + ++ A+ +L Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 275 Query: 334 DGQSLEGRALRVNVAEE 284 +G + + V A++ Sbjct: 276 NGHKFDDKEWYVGRAQK 292
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 57.8 bits (138), Expect = 2e-08 Identities = 31/75 (41%), Positives = 46/75 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YVG L +V + L ELF + G VV+ + DR TG+ +G+GFV S+E+ D AI + Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 334 DGQSLEGRALRVNVA 290 + L G+ +RVN A Sbjct: 75 NMIKLYGKPIRVNKA 89 Score = 55.8 bits (133), Expect = 7e-08 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 I++GNL ++D+ L + FS G ++ +++ D DTG S+G+ F+ AS + D AI A Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161 Query: 337 LDGQSLEGRALRVNVA 290 ++GQ L R + V+ A Sbjct: 162 MNGQYLCNRPITVSYA 177
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 57.8 bits (138), Expect = 2e-08 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 5/90 (5%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R G S + +YV NLP + D +L +F ++G +V ++ D+ TGR RG FV Sbjct: 202 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 261 Query: 367 QEELDDAIAALDGQSLEG--RALRVNVAEE 284 +EE +AI+AL+ EG + L V +AEE Sbjct: 262 REEAQEAISALNNVIPEGGSQPLSVRLAEE 291
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/73 (39%), Positives = 43/73 (58%) Frame = -1 Query: 508 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 329 V NL ++ L +F ++G+V D + DR T SRGF FV + + +DA+ A+DG Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 328 QSLEGRALRVNVA 290 L+GR LRV +A Sbjct: 77 AVLDGRELRVQMA 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/73 (39%), Positives = 43/73 (58%) Frame = -1 Query: 508 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 329 V NL ++ L +F ++G+V D + DR T SRGF FV + + +DA+ A+DG Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 328 QSLEGRALRVNVA 290 L+GR LRV +A Sbjct: 77 AVLDGRELRVQMA 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/73 (39%), Positives = 43/73 (58%) Frame = -1 Query: 508 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 329 V NL ++ L +F ++G+V D + DR T SRGF FV + + +DA+ A+DG Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 328 QSLEGRALRVNVA 290 L+GR LRV +A Sbjct: 77 AVLDGRELRVQMA 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/73 (39%), Positives = 43/73 (58%) Frame = -1 Query: 508 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 329 V NL ++ L +F ++G+V D + DR T SRGF FV + + +DA+ A+DG Sbjct: 17 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 76 Query: 328 QSLEGRALRVNVA 290 L+GR LRV +A Sbjct: 77 AVLDGRELRVQMA 89
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 57.4 bits (137), Expect = 2e-08 Identities = 29/73 (39%), Positives = 43/73 (58%) Frame = -1 Query: 508 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 329 V NL ++ L +F ++G+V D + DR T SRGF FV + + +DA+ A+DG Sbjct: 18 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 77 Query: 328 QSLEGRALRVNVA 290 L+GR LRV +A Sbjct: 78 AVLDGRELRVQMA 90
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 57.0 bits (136), Expect = 3e-08 Identities = 29/80 (36%), Positives = 49/80 (61%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 ++ S + I++ NL D+ L ++F G V + +V+ D +T + +GFGFVTM + EE Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEA 298 Query: 355 DDAIAALDGQSLEGRALRVN 296 AIA+L+G L + L+V+ Sbjct: 299 AMAIASLNGYRLGDKILQVS 318 Score = 50.1 bits (118), Expect = 4e-06 Identities = 21/74 (28%), Positives = 42/74 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ LP + + ++FS G+++++RV+ D+ TG SRG F+ + E ++AI + Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167 Query: 334 DGQSLEGRALRVNV 293 +G G + + V Sbjct: 168 NGHKPPGSSEPITV 181 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/75 (32%), Positives = 42/75 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 + V LP + L LFS G+V A+++ D+ G S G+GFV + ++ + AI L Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 Query: 334 DGQSLEGRALRVNVA 290 +G L+ + ++V+ A Sbjct: 82 NGLRLQSKTIKVSYA 96
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 56.6 bits (135), Expect = 4e-08 Identities = 29/80 (36%), Positives = 49/80 (61%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 ++ S + I++ NL D+ L ++F G V + +V+ D +T + +GFGFVTM + EE Sbjct: 239 NASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEES 298 Query: 355 DDAIAALDGQSLEGRALRVN 296 AIA+L+G L + L+V+ Sbjct: 299 AMAIASLNGYRLGDKILQVS 318 Score = 49.7 bits (117), Expect = 5e-06 Identities = 24/75 (32%), Positives = 43/75 (57%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 + V LP + L LFS G+V A+++ D+ G S G+GFV + ++ + AI+ L Sbjct: 22 LIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTL 81 Query: 334 DGQSLEGRALRVNVA 290 +G L+ + ++V+ A Sbjct: 82 NGLRLQSKTIKVSYA 96 Score = 48.5 bits (114), Expect = 1e-05 Identities = 21/74 (28%), Positives = 41/74 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ LP + + ++FS G+++++RV+ D+ TG SRG F+ + E ++AI + Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167 Query: 334 DGQSLEGRALRVNV 293 G G + + V Sbjct: 168 IGHKPPGSSEPITV 181
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 56.6 bits (135), Expect = 4e-08 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R G S + +YV NLP + D +L +F ++G +V ++ D+ TG+ RG FV Sbjct: 187 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNK 246 Query: 367 QEELDDAIAALDGQSLEG--RALRVNVAEE 284 +EE +AI+AL+ EG + L V +AEE Sbjct: 247 REEAQEAISALNNVIPEGASQPLTVRLAEE 276
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 56.6 bits (135), Expect = 4e-08 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 5/90 (5%) Frame = -1 Query: 538 RDSGSSFR---IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMAS 368 R G S + +YV NLP + D +L +F ++G +V ++ D+ TGR RG FV Sbjct: 204 RPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNK 263 Query: 367 QEELDDAIAALDGQSLEG--RALRVNVAEE 284 +EE +AI+AL+ EG + L V +A+E Sbjct: 264 REEAQEAISALNNVIPEGGSQPLSVRLAQE 293
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 56.2 bits (134), Expect = 6e-08 Identities = 26/77 (33%), Positives = 47/77 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N +DD RL ELF + G + +V+ D ++G+S+GFGFV+ E+ A+ + Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ L G+ + V A++ Sbjct: 252 NGKELNGKQIYVGRAQK 268 Score = 53.1 bits (126), Expect = 5e-07 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE--EXXXXXXXXRYIWRCTTTR 230 +G+ + + L V +A+ E +Y+ R + R Sbjct: 354 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 334 DGQSLEGRALRV 299 +G L R + V Sbjct: 159 NGMLLNDRKVFV 170
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 56.2 bits (134), Expect = 6e-08 Identities = 26/77 (33%), Positives = 47/77 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N +DD RL ELF + G + +V+ D ++G+S+GFGFV+ E+ A+ + Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ L G+ + V A++ Sbjct: 252 NGKELNGKQIYVGRAQK 268 Score = 53.1 bits (126), Expect = 5e-07 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE--EXXXXXXXXRYIWRCTTTR 230 +G+ + + L V +A+ E +Y+ R + R Sbjct: 354 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 334 DGQSLEGRALRV 299 +G L R + V Sbjct: 159 NGMLLNDRKVFV 170
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 56.2 bits (134), Expect = 6e-08 Identities = 24/73 (32%), Positives = 48/73 (65%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I+VG LP+++ + ++ +FS++G++V+ +V D+ TG+S+GF F+ Q A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 334 DGQSLEGRALRVN 296 +G ++GR +RV+ Sbjct: 98 NGIKIKGRTIRVD 110
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 55.8 bits (133), Expect = 7e-08 Identities = 27/76 (35%), Positives = 46/76 (60%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R++V N+P++ D L ++F + GK++D ++++ S+GFGFVT + + D A Sbjct: 117 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREK 174 Query: 337 LDGQSLEGRALRVNVA 290 L G +EGR + VN A Sbjct: 175 LHGTVVEGRKIEVNNA 190
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 55.8 bits (133), Expect = 7e-08 Identities = 27/76 (35%), Positives = 46/76 (60%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R++V N+P++ D L ++F + GK++D ++++ S+GFGFVT + + D A Sbjct: 118 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREK 175 Query: 337 LDGQSLEGRALRVNVA 290 L G +EGR + VN A Sbjct: 176 LHGTVVEGRKIEVNNA 191
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 55.8 bits (133), Expect = 7e-08 Identities = 27/76 (35%), Positives = 46/76 (60%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R++V N+P++ D L ++F + GK++D ++++ S+GFGFVT + + D A Sbjct: 122 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREK 179 Query: 337 LDGQSLEGRALRVNVA 290 L G +EGR + VN A Sbjct: 180 LHGTVVEGRKIEVNNA 195
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 55.5 bits (132), Expect = 9e-08 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S S ++++G L W + L E F ++G V D +++ D TGRSRGFGF++ +D Sbjct: 155 SKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVD 214 Query: 352 DAIAA---LDGQSLE 317 + + LDG+ ++ Sbjct: 215 EVVKTQHILDGKVID 229 Score = 53.9 bits (128), Expect = 3e-07 Identities = 24/55 (43%), Positives = 37/55 (67%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +I+VG + V E FS+ G ++DA+++ D+DTG+SRGFGFVT S + +D Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVD 298
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 55.1 bits (131), Expect = 1e-07 Identities = 24/77 (31%), Positives = 48/77 (62%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N ++D RL E+F ++G + +V+ D D G+S+GFGFV+ E+ A+ + Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ + G+++ V A++ Sbjct: 252 NGKDMNGKSMFVGRAQK 268 Score = 51.2 bits (121), Expect = 2e-06 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 2/98 (2%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL + F G + A+V+ + GRS+GFGFV +S EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE--EXXXXXXXXRYIWRCTTTRL 227 +G+ + + L V +A+ E +Y+ R + R+ Sbjct: 354 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRV 391 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158 Query: 334 DGQSLEGRALRV 299 +G L R + V Sbjct: 159 NGMLLNDRKVFV 170
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 55.1 bits (131), Expect = 1e-07 Identities = 25/77 (32%), Positives = 47/77 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N +DD RL +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ L G+ + V A++ Sbjct: 252 NGKELNGKQIYVGRAQK 268 Score = 53.9 bits (128), Expect = 3e-07 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 2/97 (2%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE--EXXXXXXXXRYIWRCTTTR 230 +G+ + + L V +A+ E Y+ R + R Sbjct: 354 NGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVR 390 Score = 40.4 bits (93), Expect = 0.003 Identities = 23/72 (31%), Positives = 38/72 (52%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I+V NL +++ L + S G ++ VV D + S+G+GFV + E + AI + Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKM 158 Query: 334 DGQSLEGRALRV 299 +G L GR + V Sbjct: 159 NGMLLNGRKVFV 170
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 55.1 bits (131), Expect = 1e-07 Identities = 27/83 (32%), Positives = 46/83 (55%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 DS S +I+VG +P ++ L E F + G V + ++YD + R RGFGF+T ++ + Sbjct: 108 DSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167 Query: 355 DDAIAALDGQSLEGRALRVNVAE 287 D A+ + + G+ + V AE Sbjct: 168 DQAV-NMHFHDIMGKKVEVKRAE 189 Score = 50.4 bits (119), Expect = 3e-06 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L W L FS++G+VVD ++ D+ T +SRGFGFV + +A+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 337 ----LDGQSLE 317 LDG++++ Sbjct: 71 RPHTLDGRNID 81
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 55.1 bits (131), Expect = 1e-07 Identities = 25/77 (32%), Positives = 47/77 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N +DD RL +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ L G+ + V A++ Sbjct: 252 NGKELNGKQIYVGRAQK 268 Score = 53.1 bits (126), Expect = 5e-07 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE--EXXXXXXXXRYIWRCTTTR 230 +G+ + + L V +A+ E +Y+ R + R Sbjct: 354 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 334 DGQSLEGRALRV 299 +G L R + V Sbjct: 159 NGMLLNDRKVFV 170
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 55.1 bits (131), Expect = 1e-07 Identities = 25/77 (32%), Positives = 47/77 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ N +DD RL +LF + G + +V+ D ++G+S+GFGFV+ E+ A+ + Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251 Query: 334 DGQSLEGRALRVNVAEE 284 +G+ L G+ + V A++ Sbjct: 252 NGKELNGKQIYVGRAQK 268 Score = 53.1 bits (126), Expect = 5e-07 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 2/97 (2%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL + FS G + A+V+ + GRS+GFGFV +S EE A+ + Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353 Query: 334 DGQSLEGRALRVNVAE--EXXXXXXXXRYIWRCTTTR 230 +G+ + + L V +A+ E +Y+ R + R Sbjct: 354 NGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/72 (33%), Positives = 40/72 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++ NL +D+ L + FS G ++ +VV D + S+G+GFV +QE + AI + Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158 Query: 334 DGQSLEGRALRV 299 +G L R + V Sbjct: 159 NGMLLNDRKVFV 170
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 55.1 bits (131), Expect = 1e-07 Identities = 23/73 (31%), Positives = 48/73 (65%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++G LP+++ + ++ +FS++G++V+ +V D+ TG+S+GF F+ Q A+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 334 DGQSLEGRALRVN 296 +G ++GR +RV+ Sbjct: 98 NGIKIKGRTIRVD 110
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/76 (36%), Positives = 49/76 (64%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ NL VDD +L E+FSE+G V ++V+ + G SRGFGFV ++ EE A++ + Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEM 392 Query: 334 DGQSLEGRALRVNVAE 287 +G+ + + L + +A+ Sbjct: 393 NGKMIGRKPLYIALAQ 408 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/72 (34%), Positives = 39/72 (54%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++ NL +D+ L E FS G ++ +V D TGRS+G+GFV +E AI L Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196 Query: 334 DGQSLEGRALRV 299 +G + + + V Sbjct: 197 NGMLMNDKQVFV 208 Score = 43.1 bits (100), Expect = 5e-04 Identities = 26/77 (33%), Positives = 40/77 (51%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NLP ++ + L + F + G V+ + VV +G SR FGFV E A+ + Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFG-VISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289 Query: 334 DGQSLEGRALRVNVAEE 284 +G SL L V A++ Sbjct: 290 NGISLGDDVLYVGRAQK 306 Score = 37.0 bits (84), Expect = 0.035 Identities = 21/72 (29%), Positives = 39/72 (54%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y G+L +V ++ L +LF VV RV D++ RS G+ ++ ++ + A+ AL Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109 Query: 334 DGQSLEGRALRV 299 + L R +R+ Sbjct: 110 NYTPLFDRPIRI 121
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/78 (33%), Positives = 48/78 (61%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 350 G ++ I++ NL + +++ L +LF G V ++V D T + +G+GFV+M + +E Sbjct: 399 GGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAM 458 Query: 349 AIAALDGQSLEGRALRVN 296 AI AL+G ++ R L+V+ Sbjct: 459 AIRALNGYTMGNRVLQVS 476
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 54.7 bits (130), Expect = 2e-07 Identities = 30/72 (41%), Positives = 45/72 (62%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGNLP++VD+S L E F + G +V R+V + TG RGFG+V + + + A+ L Sbjct: 287 VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KL 345 Query: 334 DGQSLEGRALRV 299 + L GR LRV Sbjct: 346 NNSELMGRKLRV 357
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/78 (33%), Positives = 48/78 (61%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 350 G ++ I++ NL + +++ L +LF G V ++V D T + +G+GFV+M + +E Sbjct: 435 GGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAM 494 Query: 349 AIAALDGQSLEGRALRVN 296 AI AL+G ++ R L+V+ Sbjct: 495 AIRALNGYTMGNRVLQVS 512
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 54.3 bits (129), Expect = 2e-07 Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV N DD +L E F +GK+ +V+ D G+S+GFGFV + E + A+ AL Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQAL 243 Query: 334 DGQSL-EGRALRVNVAEE 284 +G+ + EG++L V A++ Sbjct: 244 NGKDMGEGKSLYVARAQK 261 Score = 53.1 bits (126), Expect = 5e-07 Identities = 29/76 (38%), Positives = 45/76 (59%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NL +DD RL FS +G + A+V+ D + GRS+GFGFV + E A+ L Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTEL 347 Query: 334 DGQSLEGRALRVNVAE 287 +G+ + + L V +A+ Sbjct: 348 NGRVVGSKPLYVALAQ 363 Score = 43.9 bits (102), Expect = 3e-04 Identities = 20/72 (27%), Positives = 41/72 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +++ NL +D+ + + FS G ++ +V D + G S+G+GFV ++E + +I + Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFETEEAANTSIDKV 150 Query: 334 DGQSLEGRALRV 299 +G L G+ + V Sbjct: 151 NGMLLNGKKVYV 162 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/72 (30%), Positives = 39/72 (54%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YVG+LP V++S L + FS G V+ RV D T RS G+ +V + + A+ + Sbjct: 4 LYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDTM 63 Query: 334 DGQSLEGRALRV 299 + + + +R+ Sbjct: 64 NFDLVRNKPIRI 75
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 54.3 bits (129), Expect = 2e-07 Identities = 29/72 (40%), Positives = 45/72 (62%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGNLP++++DS L E F + G +V R+V + TG RGFG+V + + + A+ L Sbjct: 293 VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL-KL 351 Query: 334 DGQSLEGRALRV 299 + L GR LRV Sbjct: 352 NNSELMGRKLRV 363
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 54.3 bits (129), Expect = 2e-07 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L E F + GK+ D V+ D T RSRGFGFVT + EE+D +++A Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 88 RPHKVDGRVVE 98 Score = 40.4 bits (93), Expect = 0.003 Identities = 17/58 (29%), Positives = 31/58 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L + +GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 119 KIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 54.3 bits (129), Expect = 2e-07 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L E F + GK+ D V+ D T RSRGFGFVT + EE+D +++A Sbjct: 28 KLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSA 87 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 88 RPHKVDGRVVE 98 Score = 42.7 bits (99), Expect = 6e-04 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L + F +GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 119 KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 53.9 bits (128), Expect = 3e-07 Identities = 27/76 (35%), Positives = 47/76 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +++ NL +VDD RL FS G + A+++ D + G+S+GFGFV + EE + A+ + Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEM 424 Query: 334 DGQSLEGRALRVNVAE 287 + + L G+ L V +A+ Sbjct: 425 NQRMLAGKPLYVALAQ 440 Score = 46.2 bits (108), Expect = 6e-05 Identities = 26/76 (34%), Positives = 41/76 (53%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 +S +YVG L V ++ L ELF+ G V RV D T RS G+ +V + E+ + A Sbjct: 78 TSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKA 137 Query: 346 IAALDGQSLEGRALRV 299 + L+ ++GR R+ Sbjct: 138 LDELNYTLIKGRPCRI 153 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/77 (28%), Positives = 43/77 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ NL ++ + +LF + G++ +V D++ + RGFGFV A+ E A+ L Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDEL 321 Query: 334 DGQSLEGRALRVNVAEE 284 + + +G+ L V A++ Sbjct: 322 NDKEYKGKKLYVGRAQK 338
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 53.9 bits (128), Expect = 3e-07 Identities = 26/83 (31%), Positives = 46/83 (55%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D+ S +I+VG +P ++ L E F + G V + ++YD + R RGFGF+T ++ + Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167 Query: 355 DDAIAALDGQSLEGRALRVNVAE 287 D A+ + + G+ + V AE Sbjct: 168 DQAV-NMHFHDIMGKKVEVKRAE 189 Score = 50.4 bits (119), Expect = 3e-06 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L W L FS++G+VVD ++ D+ T +SRGFGFV + +A+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 337 ----LDGQSLE 317 LDG++++ Sbjct: 71 RPHTLDGRNID 81
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 53.5 bits (127), Expect = 4e-07 Identities = 27/76 (35%), Positives = 44/76 (57%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R++V N+P++ D L +F + G V D ++++ S+GFGFVTM ++ + A Sbjct: 154 RLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFVTMERPQDAERARQE 211 Query: 337 LDGQSLEGRALRVNVA 290 L G +EGR + VN A Sbjct: 212 LHGSMIEGRKIEVNCA 227
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 53.5 bits (127), Expect = 4e-07 Identities = 28/114 (24%), Positives = 53/114 (46%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGN+P+ V + ++ E+F++ G V ++V D +TG +G+GF E A+ L Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 334 DGQSLEGRALRVNVAEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTGLDPIII 173 + L R +RV Y R + H+S+ ++ P ++ Sbjct: 69 NNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNAHESSYNSRFIPPVL 122
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 53.1 bits (126), Expect = 5e-07 Identities = 30/89 (33%), Positives = 44/89 (49%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YVG L +VDD L F G + D ++ D +T + RGF FV E+ AI + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 334 DGQSLEGRALRVNVAEEXXXXXXXXRYIW 248 + L GR +RVN+A+ R +W Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVW 96
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 53.1 bits (126), Expect = 5e-07 Identities = 30/89 (33%), Positives = 44/89 (49%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YVG L +VDD L F G + D ++ D +T + RGF FV E+ AI + Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 334 DGQSLEGRALRVNVAEEXXXXXXXXRYIW 248 + L GR +RVN+A+ R +W Sbjct: 68 NESELFGRTIRVNLAKPMRIKEGSSRPVW 96
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 53.1 bits (126), Expect = 5e-07 Identities = 28/77 (36%), Positives = 48/77 (62%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 FR++VGNL V+D L + FSE+ +V +VV DR+ G++RGFGFV+ ++ A Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWR 88 Query: 340 ALDGQSLEGRALRVNVA 290 +G+ + R ++++ A Sbjct: 89 EKNGKYIGSRPVKLSRA 105
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 53.1 bits (126), Expect = 5e-07 Identities = 23/78 (29%), Positives = 49/78 (62%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L + ++ L +F +HG + + ++ DR T +SRGF F+T + + +A Sbjct: 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKD 67 Query: 337 LDGQSLEGRALRVNVAEE 284 ++G+SL G+A++V A++ Sbjct: 68 MNGKSLHGKAIKVEQAKK 85
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 52.8 bits (125), Expect = 6e-07 Identities = 26/72 (36%), Positives = 46/72 (63%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGNLP++V++S + + F + G ++ R+V D+ TG +GFG+V + + + A+ L Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLAL-KL 347 Query: 334 DGQSLEGRALRV 299 + L GR LRV Sbjct: 348 NNSELMGRKLRV 359
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 52.8 bits (125), Expect = 6e-07 Identities = 32/78 (41%), Positives = 46/78 (58%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 F +VGNL + + ++ L + F E V R+V D T RSRGFG+V + + L A+ Sbjct: 94 FTAHVGNLSFDLTENDLGDFFGEG--VTSIRLVIDPLTERSRGFGYVEFETADTLSAAL- 150 Query: 340 ALDGQSLEGRALRVNVAE 287 AL G+ L GR +R+ VAE Sbjct: 151 ALSGEDLMGRPVRITVAE 168
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 52.4 bits (124), Expect = 8e-07 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ EE+D A+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 74 RPHKVDGRVVE 84 Score = 43.5 bits (101), Expect = 4e-04 Identities = 17/58 (29%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 52.4 bits (124), Expect = 8e-07 Identities = 28/76 (36%), Positives = 46/76 (60%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++V NL VDD +L E F+ +G + A+V+ + G+S+GFGFV ++ EE AI Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEK 381 Query: 334 DGQSLEGRALRVNVAE 287 + Q + G+ L V +A+ Sbjct: 382 NQQIVAGKPLYVAIAQ 397 Score = 49.3 bits (116), Expect = 7e-06 Identities = 27/77 (35%), Positives = 42/77 (54%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV N+ + D + ELF++ G +V A + D D G+ +GFGFV E+ A+ AL Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEAL 278 Query: 334 DGQSLEGRALRVNVAEE 284 + L G L V A++ Sbjct: 279 NDSELNGEKLYVGRAQK 295 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/80 (33%), Positives = 45/80 (56%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 R GS I++ NL +D+ L + FS G ++ +++ D + G+S+GFGFV + Sbjct: 120 RKKGSG-NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGA 177 Query: 358 LDDAIAALDGQSLEGRALRV 299 +AI AL+G L G+ + V Sbjct: 178 AKEAIDALNGMLLNGQEIYV 197 Score = 43.1 bits (100), Expect = 5e-04 Identities = 26/76 (34%), Positives = 38/76 (50%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 SS +YVG+L V ++ L ++FS G V RV D T S G+ +V E A Sbjct: 35 SSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKA 94 Query: 346 IAALDGQSLEGRALRV 299 I L+ ++GR R+ Sbjct: 95 IEQLNYTPIKGRLCRI 110
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 52.4 bits (124), Expect = 8e-07 Identities = 30/75 (40%), Positives = 45/75 (60%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGNL VD+ L + FS G++V A V + GRS+G+GFV+ S E D AI A+ Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160 Query: 334 DGQSLEGRALRVNVA 290 + Q L + + V+ A Sbjct: 161 NNQFLMNKPITVSYA 175 Score = 50.1 bits (118), Expect = 4e-06 Identities = 29/84 (34%), Positives = 43/84 (51%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D IY+GNL +V DS L EL + G VV+ + DR GFGF ++++ Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65 Query: 355 DDAIAALDGQSLEGRALRVNVAEE 284 + A L+ L G+ +RVN A + Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQ 89
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 52.4 bits (124), Expect = 8e-07 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + EE+D A+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 96 RPHKVDGRVVE 106 Score = 43.9 bits (102), Expect = 3e-04 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 52.4 bits (124), Expect = 8e-07 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + EE+D A+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 96 RPHKVDGRVVE 106 Score = 43.9 bits (102), Expect = 3e-04 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 52.4 bits (124), Expect = 8e-07 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ EE+D A+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 74 RPHKVDGRVVE 84 Score = 43.5 bits (101), Expect = 4e-04 Identities = 17/58 (29%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 52.4 bits (124), Expect = 8e-07 Identities = 26/78 (33%), Positives = 42/78 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+++ N+ + + +LFS +G++ + V D TG S+GF +V A EE A Sbjct: 326 RLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIE 385 Query: 337 LDGQSLEGRALRVNVAEE 284 LD Q +GR L + A+E Sbjct: 386 LDKQIFQGRLLHILAADE 403 Score = 43.1 bits (100), Expect = 5e-04 Identities = 27/78 (34%), Positives = 41/78 (52%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I V NLP++ + ELF+ G++ RV D +RGF FV +E ++A+ Sbjct: 739 KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAENAMDQ 797 Query: 337 LDGQSLEGRALRVNVAEE 284 L G L GR L + AE+ Sbjct: 798 LQGVHLLGRRLVMQPAEQ 815 Score = 37.7 bits (86), Expect = 0.020 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQ 365 G + I++ NL ++ +L + F V A+V D + S GFGFV ++ Sbjct: 637 GPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRTK 696 Query: 364 EELDDAIAALDGQSLEGRALRVNVA 290 E+ I+A+DG ++G +++ ++ Sbjct: 697 EQATAVISAMDGTVIDGHKIQLKLS 721 Score = 33.1 bits (74), Expect = 0.50 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 11/88 (12%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEH-----------GKVVDARVVYDRDTGRSRGFGFVTMA 371 R+ V LP + + L + F++ G + D R++ +R+ G+SR F F+ Sbjct: 3 RVIVKGLPIYLTEPELQKHFNKRLITTHATSNVDGLITDLRILKNRE-GKSRRFAFIGYK 61 Query: 370 SQEELDDAIAALDGQSLEGRALRVNVAE 287 ++++ DA+ DG + + V++A+ Sbjct: 62 NEQDALDAVNYFDGSFIYTSKIEVDMAK 89
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 52.4 bits (124), Expect = 8e-07 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ EE+D A+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 74 RPHKVDGRVVE 84 Score = 43.5 bits (101), Expect = 4e-04 Identities = 17/58 (29%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 52.4 bits (124), Expect = 8e-07 Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ EE+D A+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 74 RPHKVDGRVVE 84 Score = 43.5 bits (101), Expect = 4e-04 Identities = 17/58 (29%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L + F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 162
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 52.4 bits (124), Expect = 8e-07 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L E F + G + D V+ D T RSRGFGFVT + EE+D A+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 96 RPHKVDGRVVE 106 Score = 43.9 bits (102), Expect = 3e-04 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L + F ++GK+ V+ DR +G+ RGF FVT + +D + Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 52.4 bits (124), Expect = 8e-07 Identities = 25/83 (30%), Positives = 46/83 (55%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 ++ S +I+VG +P ++ L E F+ G V + ++YD + R RGFGF+T ++ + Sbjct: 109 ENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 168 Query: 355 DDAIAALDGQSLEGRALRVNVAE 287 D A+ + + G+ + V AE Sbjct: 169 DQAV-NMHFHDIMGKKVEVKRAE 190 Score = 50.4 bits (119), Expect = 3e-06 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L W L FS++G+VVD ++ D+ T +SRGFGFV + +A+ Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 337 ----LDGQSLE 317 LDG++++ Sbjct: 71 RPHTLDGRNID 81
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/71 (36%), Positives = 44/71 (61%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ + L + + GK+ D V+ D + RSRGFGFVT +S E+D A+AA Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 337 LDGQSLEGRAL 305 S++GR + Sbjct: 82 RP-HSIDGRVV 91 Score = 47.4 bits (111), Expect = 3e-05 Identities = 18/58 (31%), Positives = 34/58 (58%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +++VG + ++ L + F E+GK+ ++ DR +G+ RGFGFVT + +D + Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 52.0 bits (123), Expect = 1e-06 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L E F + G + D V+ D ++ RSRGFGFVT S +E+D A+ A Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 75 RPHKVDGRVVE 85 Score = 45.4 bits (106), Expect = 1e-04 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L E F ++GK+ ++ DR +G+ RGF FVT + +D + Sbjct: 106 KIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/71 (36%), Positives = 44/71 (61%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ + L + + GK+ D V+ D + RSRGFGFVT +S E+D A+AA Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 337 LDGQSLEGRAL 305 S++GR + Sbjct: 70 RP-HSIDGRVV 79 Score = 47.4 bits (111), Expect = 3e-05 Identities = 18/58 (31%), Positives = 34/58 (58%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +++VG + ++ L + F E+GK+ ++ DR +G+ RGFGFVT + +D + Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/73 (34%), Positives = 44/73 (60%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 IY+GNL ++ + ++ +FSE+G VD + D +TG S+GF ++ Q A+ L Sbjct: 33 IYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILAVDNL 92 Query: 334 DGQSLEGRALRVN 296 +G + GRAL+++ Sbjct: 93 NGFKIGGRALKID 105
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/59 (38%), Positives = 38/59 (64%) Frame = -1 Query: 472 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 296 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/59 (38%), Positives = 38/59 (64%) Frame = -1 Query: 472 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 296 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/59 (38%), Positives = 38/59 (64%) Frame = -1 Query: 472 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 296 L E+FS++G + D +VYD+ + RSRGF FV + ++ +A +G L+GR +RV+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 51.6 bits (122), Expect = 1e-06 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 341 +++VG L W+ L F G ++D V+ + ++GRSRGFGFVT A ++ + Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67 Query: 340 ---ALDGQSLE 317 LDG++++ Sbjct: 68 GPHTLDGRTID 78 Score = 49.7 bits (117), Expect = 5e-06 Identities = 18/59 (30%), Positives = 38/59 (64%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 G +++++G LP V ++ L F+ +GKV + ++YD++ +SRGFGF++ + ++ Sbjct: 93 GGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVE 151
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/80 (31%), Positives = 41/80 (51%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 R ++YVGNLP V + + ++F ++G++ D +GR F FV + Sbjct: 3 RGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIK----YVDIKSGRGPAFAFVEFEDHRD 58 Query: 358 LDDAIAALDGQSLEGRALRV 299 +DA+ A DG +GR +RV Sbjct: 59 AEDAVRARDGYEFDGRRIRV 78
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 51.6 bits (122), Expect = 1e-06 Identities = 21/71 (29%), Positives = 43/71 (60%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+G++P+ + ++++L S G V++ ++++D TGRS+G+ F+ E A+ L Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 334 DGQSLEGRALR 302 +G L R L+ Sbjct: 80 NGYQLGSRFLK 90
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 S R++V NLP+ +S L +FS+ GK+ + V +D + S+GF +V + A Sbjct: 300 SSRLFVRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAY 359 Query: 343 AALDGQSLEGRALRV 299 LDG+ +GR + + Sbjct: 360 KELDGKHFQGRLMHI 374 Score = 43.5 bits (101), Expect = 4e-04 Identities = 27/78 (34%), Positives = 39/78 (50%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I + NLP+Q + LF +G++ RV D +RGFGF S E ++A+ A Sbjct: 703 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDA 761 Query: 337 LDGQSLEGRALRVNVAEE 284 L L GR L + A E Sbjct: 762 LKNTHLLGRRLVLEFANE 779 Score = 40.0 bits (92), Expect = 0.004 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQEELDD 350 ++V NL + + R E+F V AR+ D R S GFGFV ++ + Sbjct: 599 LFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQA 658 Query: 349 AIAALDGQSLEGRALRVNVAEE 284 A+AA+DG L+ L V + + Sbjct: 659 ALAAMDGYKLDQHELVVRASNK 680
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = -1 Query: 472 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 296 L E+FS +G + VVYD+ TGRSRGF FV ++ +A+ +G L+GR +RV+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 191
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 51.6 bits (122), Expect = 1e-06 Identities = 27/77 (35%), Positives = 45/77 (58%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 IYV N+ V + L + FS+ G + +++ D + G+S+GFGFV ++ EE DA+ Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTF 364 Query: 334 DGQSLEGRALRVNVAEE 284 GQ G+ L V +A++ Sbjct: 365 HGQMFHGKPLYVAIAQK 381 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/72 (30%), Positives = 39/72 (54%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++V NLP V ++ L ++F + G +V +V D G+SRG+GFV ++ AI L Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTL 172 Query: 334 DGQSLEGRALRV 299 + + + + V Sbjct: 173 NSTIVADKEIYV 184 Score = 40.8 bits (94), Expect = 0.002 Identities = 21/72 (29%), Positives = 38/72 (52%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YVG+L V + L + F+E + R+ D +GRS +G+ S+++ + AI Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85 Query: 334 DGQSLEGRALRV 299 + L G+ +RV Sbjct: 86 NNSLLNGKMIRV 97 Score = 37.0 bits (84), Expect = 0.035 Identities = 22/77 (28%), Positives = 37/77 (48%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ NL V + L E F+E GK+V + D + RG+ FV + E+ A + Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETV 261 Query: 334 DGQSLEGRALRVNVAEE 284 +G + L V A++ Sbjct: 262 NGTKFGSKCLYVGRAQK 278
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = -1 Query: 472 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVN 296 L E+FS +G + VVYD+ TGRSRGF FV ++ +A+ +G L+GR +RV+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVD 193
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 51.2 bits (121), Expect = 2e-06 Identities = 27/79 (34%), Positives = 42/79 (53%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D S R++V NLP+ + L +LFS++G + + D T + +GF F+T E Sbjct: 397 DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 456 Query: 355 DDAIAALDGQSLEGRALRV 299 A + +DGQ +GR L V Sbjct: 457 VKAYSEVDGQVFQGRMLHV 475 Score = 38.5 bits (88), Expect = 0.012 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYD-RDTGRSRGFGFVTMASQEELDDAIA 341 +I V N+P+Q + ELFS G++ R+ TG RGFGFV ++++ A Sbjct: 833 KILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFN 892 Query: 340 AL-DGQSLEGRALRVNVAE 287 AL L GR L + A+ Sbjct: 893 ALCHSTHLYGRRLVLEWAD 911 Score = 38.1 bits (87), Expect = 0.016 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 R+ V NLP + + R +LF+ G + D + + +D G+ R FGF+ S+EE A Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQKA 58
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFV----TMASQEELDD 350 +++VG L W L + F++ G+VVD + D +TGRSRGFGF+ + + ++ LD Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135 Query: 349 AIAALDGQSLE 317 LDG+ ++ Sbjct: 136 KEHRLDGRVID 146 Score = 31.2 bits (69), Expect = 1.9 Identities = 13/52 (25%), Positives = 27/52 (51%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 362 +I+VG L + + ++ E F + G++ + D + RGF F+T ++ Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEED 211
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTM---ASQEE-LDD 350 +++VG L W L + F++ G+VVD + D +TGRSRGFGF+ AS E+ LD Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 128 Query: 349 AIAALDGQSLE 317 LDG+ ++ Sbjct: 129 KEHRLDGRVID 139 Score = 31.2 bits (69), Expect = 1.9 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -1 Query: 517 RIYVGNL-PWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 362 +I+VG L P + ++ E F E G++ + D + RGF F+T +E Sbjct: 153 KIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEE 205
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 51.2 bits (121), Expect = 2e-06 Identities = 23/56 (41%), Positives = 33/56 (58%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +++++G L W L + FS+ G+VVD + D TGRSRGFGFV E +D Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152 Score = 34.7 bits (78), Expect = 0.17 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 362 +I+VG L + ++ E F G+V + D T + RGF F+T +E Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 51.2 bits (121), Expect = 2e-06 Identities = 23/56 (41%), Positives = 33/56 (58%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +++++G L W L + FS+ G+VVD + D TGRSRGFGFV E +D Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 152 Score = 34.7 bits (78), Expect = 0.17 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 362 +I+VG L + ++ E F G+V + D T + RGF F+T +E Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 50.8 bits (120), Expect = 2e-06 Identities = 27/76 (35%), Positives = 44/76 (57%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++V ++P V D +L + FS + A VV D + RSRGFGFV+ A +++ +A+A Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKA 86 Query: 334 DGQSLEGRALRVNVAE 287 G LRV++A+ Sbjct: 87 RKTKFNGHILRVDIAK 102 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Frame = -1 Query: 517 RIYVGNLPWQVDDS-RLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 ++ + N+PW D +L ++F +G VV+A + RD G+ GF FVTM A+ Sbjct: 148 KLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRD-GKLCGFAFVTMKKISNCRIALE 206 Query: 340 ALDGQSLEGRALRVNVA 290 ++GR + V+ A Sbjct: 207 NTKDLKIDGRKVAVDFA 223
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 50.8 bits (120), Expect = 2e-06 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 341 +I+VG L D + E +S+ G++ D V+ D T RSRGFGFVT + + E+D A+ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 340 ---ALDGQSLE 317 +DG++++ Sbjct: 84 RPHIIDGKTVD 94 Score = 44.3 bits (103), Expect = 2e-04 Identities = 19/61 (31%), Positives = 34/61 (55%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S+ R+YV + + L E F+++G V + ++ D+ T + RGFGFVT + +D Sbjct: 112 STKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQC 171 Query: 346 I 344 + Sbjct: 172 V 172
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 50.8 bits (120), Expect = 2e-06 Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L + F + G++VD V+ D T RSRGFGF+T + +DDA A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 78 RPHKVDGRVVE 88 Score = 43.9 bits (102), Expect = 3e-04 Identities = 21/76 (27%), Positives = 44/76 (57%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG + +++++ L + F ++G VV A +V D++T + RGF FV + +D + Sbjct: 109 KLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLS 168 Query: 337 LDGQSLEGRALRVNVA 290 + Q + G+ + V A Sbjct: 169 RNHQ-IRGKHIDVKKA 183
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 50.8 bits (120), Expect = 2e-06 Identities = 28/76 (36%), Positives = 47/76 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ NL V+D +L E+FSE+G V +V+ + G SRGFGFV ++ EE A+ + Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEM 388 Query: 334 DGQSLEGRALRVNVAE 287 +G+ + + L V +A+ Sbjct: 389 NGKMIGRKPLYVALAQ 404 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/77 (36%), Positives = 43/77 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YV NLP ++ D L + F ++G + A V+ D+ +G SR FGFV S E A+ + Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKM 285 Query: 334 DGQSLEGRALRVNVAEE 284 +G SL L V A++ Sbjct: 286 NGISLGEDVLYVGRAQK 302 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/72 (33%), Positives = 38/72 (52%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +++ NL +D+ L E FS G ++ +V D GRS+G+GFV +E AI L Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 192 Query: 334 DGQSLEGRALRV 299 +G L + + V Sbjct: 193 NGMLLNDKQVFV 204 Score = 42.7 bits (99), Expect = 6e-04 Identities = 24/72 (33%), Positives = 43/72 (59%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +YVG+L V++S L++LF++ V + RV D T RS G+ +V A+ E+ A+ +L Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMESL 105 Query: 334 DGQSLEGRALRV 299 + + R +R+ Sbjct: 106 NYAPIRDRPIRI 117
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 50.8 bits (120), Expect = 2e-06 Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L F + G + D V+ D +T RSRGFGFVT A+ E++D A+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 73 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 74 RPHKVDGRVVE 84 Score = 42.7 bits (99), Expect = 6e-04 Identities = 17/58 (29%), Positives = 32/58 (55%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +I+VG + ++ L + F ++GK+ ++ DR +G+ RGF FVT +D + Sbjct: 105 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 162
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 50.8 bits (120), Expect = 2e-06 Identities = 29/81 (35%), Positives = 43/81 (53%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S SS +YVGNLP + + + +LFS++G VV + + R G+ FV + + Sbjct: 3 SRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAE 59 Query: 352 DAIAALDGQSLEGRALRVNVA 290 DAI DG +G LRV +A Sbjct: 60 DAIHGRDGYDFDGHRLRVELA 80
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 50.8 bits (120), Expect = 2e-06 Identities = 30/82 (36%), Positives = 46/82 (56%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 SGS ++V L + L LFS++GKVV A+VV + + +R +GFVTM++ +E Sbjct: 403 SGSGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEAT 462 Query: 352 DAIAALDGQSLEGRALRVNVAE 287 I+ L L GR + V A+ Sbjct: 463 KCISHLHRTELHGRMISVEKAK 484
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 50.8 bits (120), Expect = 2e-06 Identities = 30/76 (39%), Positives = 44/76 (57%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++V NL ++V +L E+FS G VV A ++ D+D G+SRG G VT E AI+ Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMF 262 Query: 334 DGQSLEGRALRVNVAE 287 +GQ L R + V + E Sbjct: 263 NGQLLFDRPMHVKMDE 278 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 709 Query: 337 LDGQSLEGRALRVNV 293 ++G L GR + V + Sbjct: 710 MNGMKLSGREIDVRI 724
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 50.8 bits (120), Expect = 2e-06 Identities = 26/80 (32%), Positives = 43/80 (53%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 S R++V NL ++ +S L +FS GK+ + V +D S+GF +V A + +A Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353 Query: 343 AALDGQSLEGRALRVNVAEE 284 LDG+ +GR L + A + Sbjct: 354 RNLDGKIFQGRLLHILPASQ 373 Score = 43.5 bits (101), Expect = 4e-04 Identities = 27/78 (34%), Positives = 39/78 (50%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I + NLP+Q + LF +G++ RV D +RGFGF S E ++A+ A Sbjct: 698 KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSAREAENAMDA 756 Query: 337 LDGQSLEGRALRVNVAEE 284 L L GR L + A E Sbjct: 757 LKNTHLLGRRLVLEFANE 774
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 50.4 bits (119), Expect = 3e-06 Identities = 23/56 (41%), Positives = 32/56 (57%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +++++G L W L + FS+ G VVD + D TGRSRGFGFV E +D Sbjct: 95 WKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVD 150 Score = 34.7 bits (78), Expect = 0.17 Identities = 16/52 (30%), Positives = 26/52 (50%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 362 +I+VG L + ++ E F G+V + D T + RGF F+T +E Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 50.4 bits (119), Expect = 3e-06 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 F I+VG+L +DS L F S + A+++ D TG SR +GFV +S++E A+ Sbjct: 182 FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHAL 241 Query: 343 AALDGQSLEGRALRVNVA 290 + G +GR LR++VA Sbjct: 242 MHMQGYLCQGRPLRISVA 259
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 50.4 bits (119), Expect = 3e-06 Identities = 22/78 (28%), Positives = 44/78 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+++ N+ ++ + LFS++G + + + D TG+S+GF +V +E+ A + Sbjct: 311 RLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRS 370 Query: 337 LDGQSLEGRALRVNVAEE 284 LD Q +GR L + A++ Sbjct: 371 LDKQIFQGRLLHILPADK 388 Score = 50.1 bits (118), Expect = 4e-06 Identities = 30/85 (35%), Positives = 46/85 (54%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 + SG S +I + NLP++ L+ELF G++ RV D +RGF FV +E Sbjct: 711 KKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKE 769 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 + A++ L+G L GR L + AE+ Sbjct: 770 AETAMSQLEGVHLLGRRLVMQYAEQ 794 Score = 38.1 bits (87), Expect = 0.016 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRD---TGR--SRGFGFVTMASQ 365 G + ++V NL + L +LF V A V D +G+ S GFGFV ++ Sbjct: 614 GPTVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTK 673 Query: 364 EELDDAIAALDGQSLEGRALRVNVAEE 284 E+ + AI+ LDG L+G L++ ++ + Sbjct: 674 EQANVAISTLDGHVLDGHKLQLKLSHK 700
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 50.4 bits (119), Expect = 3e-06 Identities = 28/76 (36%), Positives = 45/76 (59%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 + F +++ NLP+ ++ L ++F E G V+ A V D + G SRGFG V +++E+ A Sbjct: 217 NGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRA 275 Query: 346 IAALDGQSLEGRALRV 299 I +G +EGR L V Sbjct: 276 IDTFNGMEVEGRVLEV 291 Score = 42.7 bits (99), Expect = 6e-04 Identities = 26/72 (36%), Positives = 35/72 (48%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I+V NL + L ELF G+VV+A ++ + G RG G V E + DAI+ Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAISKF 181 Query: 334 DGQSLEGRALRV 299 DG R L V Sbjct: 182 DGALFMDRKLMV 193 Score = 32.7 bits (73), Expect = 0.66 Identities = 21/75 (28%), Positives = 37/75 (49%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 IY NLP+ S L +LF GK+ +A + ++ G+ G V + + D I L Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKINNAE-LKPQENGQPTGVAVVEYENLVDADFCIQKL 409 Query: 334 DGQSLEGRALRVNVA 290 + + G +L+++ A Sbjct: 410 NNYNYGGCSLQISYA 424
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/52 (40%), Positives = 31/52 (59%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 362 +I+VG L + F + GKV DA +++D+ T R RGFGFVT S++ Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79 Score = 45.1 bits (105), Expect = 1e-04 Identities = 21/52 (40%), Positives = 31/52 (59%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 362 +I+VG L + F + GKV DA +++D+ T R RGFGFVT S++ Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 50.1 bits (118), Expect = 4e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 ++++G L WQ L E F + G+V + V+ D T RSRGFGFVT Q +D +A Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 79 Score = 45.8 bits (107), Expect = 7e-05 Identities = 21/52 (40%), Positives = 32/52 (61%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 362 +I+VG L + + F + GKV DA +++D+ T R RGFGFVT S++ Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 50.1 bits (118), Expect = 4e-06 Identities = 30/76 (39%), Positives = 44/76 (57%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++V NL ++V +L E+FS G VV A ++ D+D G+SRG G VT E AI+ Sbjct: 165 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 223 Query: 334 DGQSLEGRALRVNVAE 287 +GQ L R + V + E Sbjct: 224 NGQLLFDRPMHVKMDE 239 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 670 Query: 337 LDGQSLEGRALRVNV 293 ++G L GR + V + Sbjct: 671 MNGMKLSGREIDVRI 685
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 50.1 bits (118), Expect = 4e-06 Identities = 30/76 (39%), Positives = 44/76 (57%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++V NL ++V +L E+FS G VV A ++ D+D G+SRG G VT E AI+ Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 263 Query: 334 DGQSLEGRALRVNVAE 287 +GQ L R + V + E Sbjct: 264 NGQLLFDRPMHVKMDE 279 Score = 40.0 bits (92), Expect = 0.004 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I+V NLP+ L + F+E G V+ A + + G+S+G G V S E + A Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADI--KMENGKSKGCGVVKFESPEVAERACRM 710 Query: 337 LDGQSLEGRALRVNV 293 ++G L GR + V + Sbjct: 711 MNGMKLSGREIDVRI 725
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 50.1 bits (118), Expect = 4e-06 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 ++++G L WQ L + FS+ G++ + V+ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/55 (36%), Positives = 34/55 (61%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +I+VG L + + F + GKV DA +++D+ T R RGFGFVT +++ ++ Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++V + ++ + L ++FS+ G V R++ + T SRGFGF++ ++ EE AI L Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 334 DGQSLEGRALRVNVAE 287 + Q GR L V A+ Sbjct: 163 NSQEFYGRVLNVQKAK 178
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 50.1 bits (118), Expect = 4e-06 Identities = 22/58 (37%), Positives = 34/58 (58%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 ++++G L WQ L + FS+ G++ + V+ D T RSRGFGFVT A +D + Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVL 79 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/55 (36%), Positives = 34/55 (61%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 +I+VG L + + F + GKV DA +++D+ T R RGFGFVT +++ ++ Sbjct: 111 KIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVE 165
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 49.7 bits (117), Expect = 5e-06 Identities = 22/70 (31%), Positives = 41/70 (58%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D S+ +++VG++P + + F +HG V++ ++ D+ TG+ +G FV A+ ++ Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDA 174 Query: 355 DDAIAALDGQ 326 D AI AL Q Sbjct: 175 DRAIRALHNQ 184 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/64 (37%), Positives = 40/64 (62%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 F+++VG+L Q + + E+F + G V D ++ D + +SRG GFV +S+E A+A Sbjct: 211 FKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKE---TAMA 266 Query: 340 ALDG 329 A+DG Sbjct: 267 AIDG 270
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 49.7 bits (117), Expect = 5e-06 Identities = 24/76 (31%), Positives = 46/76 (60%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 RI+VG + ++ ++S L + FS++G V + ++V DR G S+G+GFVT +QE+ + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 337 LDGQSLEGRALRVNVA 290 + + + + L + A Sbjct: 93 AEKLNYKDKKLNIGPA 108
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 49.7 bits (117), Expect = 5e-06 Identities = 24/76 (31%), Positives = 46/76 (60%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 RI+VG + ++ ++S L + FS++G V + ++V DR G S+G+GFVT +QE+ + Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 337 LDGQSLEGRALRVNVA 290 + + + + L + A Sbjct: 93 AEKLNYKDKKLNIGPA 108
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 49.7 bits (117), Expect = 5e-06 Identities = 23/74 (31%), Positives = 42/74 (56%) Frame = -1 Query: 508 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 329 + NL +Q + L F +G + D + D+ + +S+GFGFV + + + A+ DG Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82 Query: 328 QSLEGRALRVNVAE 287 + ++GR LRV +A+ Sbjct: 83 KLVDGRELRVTLAK 96
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 49.7 bits (117), Expect = 5e-06 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Frame = -1 Query: 538 RDSGSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQE 362 R S SS R ++V L + L LFS+HGKV+ A+VV + + +R +GFVTM++ + Sbjct: 444 RASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSD 503 Query: 361 ELDDAIAALDGQSLEGRALRVNVAE 287 E I+ L L GR + V A+ Sbjct: 504 EATKCISHLHRTELHGRMISVEKAK 528
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 49.7 bits (117), Expect = 5e-06 Identities = 21/60 (35%), Positives = 34/60 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L W+ + L + F ++G++ V D TGRSRGF F+ + E +D AA Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116 Score = 42.0 bits (97), Expect = 0.001 Identities = 19/76 (25%), Positives = 40/76 (52%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I+VG L ++ D + F + G +V+ + +D+ + +GF F+T S++ + D + Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196 Query: 337 LDGQSLEGRALRVNVA 290 Q + G+ + V A Sbjct: 197 -PKQKIAGKEVDVKRA 211
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 49.3 bits (116), Expect = 7e-06 Identities = 28/79 (35%), Positives = 40/79 (50%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D S R++V NL + + L +LFS +G + + D T + +GF FVT E Sbjct: 395 DLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 454 Query: 355 DDAIAALDGQSLEGRALRV 299 A A +DGQ +GR L V Sbjct: 455 VKAYAEVDGQVFQGRMLHV 473 Score = 39.7 bits (91), Expect = 0.005 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYD-RDTGRSRGFGFVTMASQEELDDAIA 341 +I V N+P+Q + + ELFS G++ R+ TG RGFGFV ++++ A Sbjct: 825 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFN 884 Query: 340 AL-DGQSLEGRALRVNVAE 287 AL L GR L + A+ Sbjct: 885 ALCHSTHLYGRRLVLEWAD 903 Score = 38.5 bits (88), Expect = 0.012 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 R+ V NLP + + R +LF+ G + D + + +D G+ R FGF+ S+EE A+ Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAAL 59
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 48.9 bits (115), Expect = 9e-06 Identities = 25/76 (32%), Positives = 42/76 (55%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L V + L+E FS+ G V A ++ D+ +G+ RGFGFV + + D A A Sbjct: 99 KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA-AV 157 Query: 337 LDGQSLEGRALRVNVA 290 + ++G + V A Sbjct: 158 VKFHPIQGHRVEVKKA 173 Score = 47.0 bits (110), Expect = 3e-05 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 341 ++++G L Q +S L F G + D VV + T RSR FGFVT ++ EE D A+A Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 340 ---ALDGQSLE 317 A+DG ++E Sbjct: 68 SPHAVDGNTVE 78
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 48.5 bits (114), Expect = 1e-05 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDA-RVVYDRDTGRSRGFGFVTMASQEEL 356 S F ++VG+L ++ L+ LF K V RV+ D TG SR FGFV ++E Sbjct: 188 STPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDER 247 Query: 355 DDAIAALDGQSLEGRALRVNVA 290 A+ + G+ +GRALRV A Sbjct: 248 RRALIEMSGKWFQGRALRVAYA 269
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 48.5 bits (114), Expect = 1e-05 Identities = 28/89 (31%), Positives = 43/89 (48%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 IYVG L +V + L F G + D ++ D ++ R RGF F+ E+ AI + Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 334 DGQSLEGRALRVNVAEEXXXXXXXXRYIW 248 + L GR +RVN+A+ + IW Sbjct: 68 NDSELCGRTIRVNLAKPVRVKEDSFKPIW 96
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 48.5 bits (114), Expect = 1e-05 Identities = 18/58 (31%), Positives = 34/58 (58%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +++VG + ++ L E F E+GK+ ++ D+ +G+ RGFGFVT + +D + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 47.8 bits (112), Expect = 2e-05 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ + L + + G++ D V+ D + RSRGFGFVT + E+D A++A Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 70 RPHTIDGRVVE 80
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 48.5 bits (114), Expect = 1e-05 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L F + G +VD V+ D T RSRGFGF+T + +D+A A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 337 ----LDGQSLE 317 +DG+++E Sbjct: 85 RPHKIDGRTVE 95 Score = 45.8 bits (107), Expect = 7e-05 Identities = 20/58 (34%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +++VG L D+ L E F + G++V +V D+DTG+ RGF F+ + +D I Sbjct: 116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKII 173
>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) (Suppressor of CDC2 with RNA-binding motif 2) Length = 406 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D S +Y+ LP D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 57 DQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAA 116 Query: 355 DDAIAALDGQSLEGR 311 A++AL ++ + Sbjct: 117 QKAVSALKASGVQAQ 131 Score = 45.8 bits (107), Expect = 7e-05 Identities = 21/66 (31%), Positives = 37/66 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ NLP +D+ L + G+V+ R++ D +G SRG GF M S E+ + I Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIGHF 201 Query: 334 DGQSLE 317 +G+ ++ Sbjct: 202 NGKFIK 207
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/77 (29%), Positives = 41/77 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+++ N+ + + +LFS +G++ + V D TG+S+GF +V E +A Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361 Query: 337 LDGQSLEGRALRVNVAE 287 LD Q +GR L + A+ Sbjct: 362 LDKQIFQGRLLHILPAD 378 Score = 44.3 bits (103), Expect = 2e-04 Identities = 29/80 (36%), Positives = 41/80 (51%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 S +I V NLP++ + ELFS G++ RV D +RGF FV E ++A+ Sbjct: 711 SGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPSEAENAM 769 Query: 343 AALDGQSLEGRALRVNVAEE 284 L G L GR L + AE+ Sbjct: 770 DQLQGVHLLGRRLVMQYAEQ 789 Score = 41.6 bits (96), Expect = 0.001 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 5/87 (5%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVY-----DRDTGRSRGFGFVTMASQ 365 G + I+V NL + ++L E F V A+V + D S GFGF+ ++ Sbjct: 609 GPTVSIFVKNLNFSTTSAQLAEKFKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTK 668 Query: 364 EELDDAIAALDGQSLEGRALRVNVAEE 284 E+ IAA+DG ++G +++ ++ + Sbjct: 669 EQAGAVIAAMDGAVIDGHKIQLKISHK 695 Score = 35.0 bits (79), Expect = 0.13 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 9/86 (10%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELF---------SEHGKVVDARVVYDRDTGRSRGFGFVTMASQ 365 R+ V LP ++++RL F ++ D ++V D+ +G SR F F+ S+ Sbjct: 3 RVIVKGLPIYLEEARLRAHFLKRLQQQGRGSEDQITDVKIVKDK-SGNSRRFAFIGYRSE 61 Query: 364 EELDDAIAALDGQSLEGRALRVNVAE 287 ++ DAI +G ++ + V +A+ Sbjct: 62 QDAFDAIEYFNGSFIDTARIEVAMAK 87
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/76 (28%), Positives = 46/76 (60%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 RI+VG + ++ +++ L + FS++G V + ++V DR G S+G+GF+T +QE+ + Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 337 LDGQSLEGRALRVNVA 290 + + + + L + A Sbjct: 93 AEKLNYKDKKLNIGPA 108
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core| protein A1-A) (PEN repeat clone P9) Length = 365 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G L ++ D L F + G +VD V+ D T RSRGFGF+T + +D+A + Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKS 91 Query: 337 ----LDGQSLE 317 +DG+ +E Sbjct: 92 RPHKIDGRVVE 102 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/76 (30%), Positives = 39/76 (51%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +++VG L D+ + + F G +VD +V D++TG+ RGF FV + +D + Sbjct: 123 KLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182 Query: 337 LDGQSLEGRALRVNVA 290 Q L G+ + V A Sbjct: 183 KQHQ-LNGKMVDVKKA 197
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 47.8 bits (112), Expect = 2e-05 Identities = 22/75 (29%), Positives = 38/75 (50%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D S +Y+ LP D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 57 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAA 116 Query: 355 DDAIAALDGQSLEGR 311 A++AL ++ + Sbjct: 117 QKAVSALKANGVQAQ 131 Score = 46.2 bits (108), Expect = 6e-05 Identities = 22/66 (33%), Positives = 37/66 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ NLP +D+ L + G+V+ RV+ D +G SRG GF M S E+ + I Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRVLRD-SSGASRGVGFARMESTEKCEAVIGHF 201 Query: 334 DGQSLE 317 +G+ ++ Sbjct: 202 NGKFIK 207
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 350 G ++VG +P + + LV LF + G + D R++ D +G++RG+ F+T +E + Sbjct: 162 GIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQE 221 Query: 349 AIAALDGQSLE-GRALRVNVA 290 A+ D + G+ L V ++ Sbjct: 222 AVKLCDSYEIRPGKHLGVCIS 242
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 47.4 bits (111), Expect = 3e-05 Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELF-SEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 350 S + I+VG+L V++ + LF S + A+++ D T SRG+GFV + + Sbjct: 184 SEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKS 243 Query: 349 AIAALDGQSLEGRALRVNVA 290 A+A + GQ R +RV +A Sbjct: 244 ALAEMQGQICGDRPIRVGLA 263
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/72 (37%), Positives = 40/72 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGNL +V + L ELF + G + + DR+ G+ + FGFV E + AIA L Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70 Query: 334 DGQSLEGRALRV 299 +G L GR + V Sbjct: 71 NGIRLYGRPINV 82
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 46.6 bits (109), Expect = 4e-05 Identities = 27/82 (32%), Positives = 44/82 (53%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S S ++V L + L E F V+AR+V DRDTG S+GFGFV ++ E+ Sbjct: 498 SAQSKTLFVRGLSEDTTEETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAEDAK 554 Query: 352 DAIAALDGQSLEGRALRVNVAE 287 A A++ ++G + ++ A+ Sbjct: 555 AAKEAMEDGEIDGNKVTLDFAK 576 Score = 42.7 bits (99), Expect = 6e-04 Identities = 23/81 (28%), Positives = 44/81 (54%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDD 350 G S + V NL + + L E+F K R+ ++ GR++GF F+ +S E+ D Sbjct: 411 GDSKVLVVNNLSYSATEDSLREVFE---KATSIRI--PQNQGRAKGFAFIEFSSAEDAKD 465 Query: 349 AIAALDGQSLEGRALRVNVAE 287 A+ + + +EGR++R+ ++ Sbjct: 466 AMDSCNNTEIEGRSIRLEFSQ 486 Score = 30.4 bits (67), Expect = 3.3 Identities = 20/75 (26%), Positives = 38/75 (50%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++GNL + L + E + + D G S+ FG+V +S+EE++ A+ L Sbjct: 234 IFIGNLNSTKEFDELKDALREFFSKKNL-TIQDIRIGNSKKFGYVDFSSEEEVEKAL-KL 291 Query: 334 DGQSLEGRALRVNVA 290 G+ + G +++ A Sbjct: 292 TGKKILGTEVKIEKA 306
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 46.2 bits (108), Expect = 6e-05 Identities = 20/73 (27%), Positives = 40/73 (54%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I+VG + + L LFS++G ++ +++YD+ G G+GF++ + I L Sbjct: 197 IFVGGIAKSLSIGELSFLFSKYGPILSMKLIYDKTKGEPNGYGFISYPLGSQASLCIKEL 256 Query: 334 DGQSLEGRALRVN 296 +G+++ G L +N Sbjct: 257 NGRTVNGSTLFIN 269 Score = 33.9 bits (76), Expect = 0.29 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 20/97 (20%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVY-------------------DRDTGRSRG 392 +YV ++P D L + + G+++ +V+ D G SRG Sbjct: 542 LYVKHIPLSWTDEDLYDFYKSFGEIISVKVITVGGSKNKYRQQSNDSSSDNDLPVGSSRG 601 Query: 391 FGFVTMASQEELDDAIAALDG-QSLEGRALRVNVAEE 284 +GFV+ S + AI DG Q + + L V+ A++ Sbjct: 602 YGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQK 638
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 46.2 bits (108), Expect = 6e-05 Identities = 21/57 (36%), Positives = 35/57 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 I+VG +P + + LV LF + G + D R++ D TG +RG+ FVT ++E +A+ Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 46.2 bits (108), Expect = 6e-05 Identities = 21/57 (36%), Positives = 35/57 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 I+VG +P + + LV LF + G + D R++ D TG +RG+ FVT ++E +A+ Sbjct: 164 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 220
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 46.2 bits (108), Expect = 6e-05 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 341 ++++G L ++ + L + + G + D V+ D + RSRGFGFVT + E+D A+A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMAT 69 Query: 340 ---ALDGQSLE 317 +DG+ +E Sbjct: 70 RPHTIDGRVVE 80 Score = 45.4 bits (106), Expect = 1e-04 Identities = 17/58 (29%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +++VG + ++ L E F E+GK+ ++ D+ +G+ RGF FVT + +D + Sbjct: 101 KLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 46.2 bits (108), Expect = 6e-05 Identities = 25/79 (31%), Positives = 41/79 (51%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S+ ++++G LP ++D ++ EL + G + +V D TG S+G+ F D A Sbjct: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316 Query: 346 IAALDGQSLEGRALRVNVA 290 IA L+G L + L V A Sbjct: 317 IAGLNGMQLGDKKLLVQRA 335 Score = 33.1 bits (74), Expect = 0.50 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKV-----VDARVVYDRDTGRSRGFGFVTMASQEELD 353 R+YVGN+P+ + + +++ F+ ++ V + + F F+ S +E Sbjct: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 209 Query: 352 DAIAALDGQSLEGRALRV 299 A+ A DG +G++L++ Sbjct: 210 QAM-AFDGIIFQGQSLKI 226
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 46.2 bits (108), Expect = 6e-05 Identities = 25/79 (31%), Positives = 41/79 (51%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S+ ++++G LP ++D ++ EL + G + +V D TG S+G+ F D A Sbjct: 257 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 316 Query: 346 IAALDGQSLEGRALRVNVA 290 IA L+G L + L V A Sbjct: 317 IAGLNGMQLGDKKLLVQRA 335 Score = 33.1 bits (74), Expect = 0.50 Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKV-----VDARVVYDRDTGRSRGFGFVTMASQEELD 353 R+YVGN+P+ + + +++ F+ ++ V + + F F+ S +E Sbjct: 150 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 209 Query: 352 DAIAALDGQSLEGRALRV 299 A+ A DG +G++L++ Sbjct: 210 QAM-AFDGIIFQGQSLKI 226
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 46.2 bits (108), Expect = 6e-05 Identities = 23/79 (29%), Positives = 41/79 (51%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S +IY+ NLP + + ++VEL G ++ +++ + G S+GF F + + + A Sbjct: 308 SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVA 367 Query: 346 IAALDGQSLEGRALRVNVA 290 I+ LDG+ G L A Sbjct: 368 ISGLDGKDTYGNKLHAQFA 386
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 46.2 bits (108), Expect = 6e-05 Identities = 21/57 (36%), Positives = 35/57 (61%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 I+VG +P + + LV LF + G + D R++ D TG +RG+ FVT ++E +A+ Sbjct: 74 IFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAV 130
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 45.8 bits (107), Expect = 7e-05 Identities = 21/77 (27%), Positives = 41/77 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+++ N+ + + +LFS +G++ + + D TG+S+GF +V + + A Sbjct: 331 RLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVE 390 Query: 337 LDGQSLEGRALRVNVAE 287 LD Q +GR L + A+ Sbjct: 391 LDKQIFQGRLLHILPAD 407 Score = 42.7 bits (99), Expect = 6e-04 Identities = 27/78 (34%), Positives = 40/78 (51%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I V NLP++ + ELFS G++ RV D +RGF FV +E ++A+ Sbjct: 753 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAENAMDQ 811 Query: 337 LDGQSLEGRALRVNVAEE 284 L G L GR L + E+ Sbjct: 812 LQGVHLLGRRLVMEFVEQ 829 Score = 38.5 bits (88), Expect = 0.012 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 5/86 (5%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMAS 368 +G + I++ NL + +L E F V A+V D + S GFGF + Sbjct: 647 AGPTVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKT 706 Query: 367 QEELDDAIAALDGQSLEGRALRVNVA 290 +E+ + I+A++G L+G L++ ++ Sbjct: 707 KEQANAVISAMEGTILDGHKLQLKLS 732
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 45.8 bits (107), Expect = 7e-05 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 RI+VG + ++ L +FS +G V +++ DR G S+G+GFVT +++E A Sbjct: 34 RIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEAQRLQA- 91 Query: 337 LDGQSLEGRALRVNVA 290 DG+ + R ++N+A Sbjct: 92 -DGECVVLRDRKLNIA 106
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 45.8 bits (107), Expect = 7e-05 Identities = 24/70 (34%), Positives = 41/70 (58%) Frame = -1 Query: 508 VGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDG 329 V NLP ++++ L +LF + G+V+ + D+ TG +GF FVT S+++ AIA L+ Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELND 239 Query: 328 QSLEGRALRV 299 + L+V Sbjct: 240 IRMYHMVLKV 249
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R++VGNLP + + LF+++G+ + + + +GFGF+ + S+ + A A Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 351 Query: 337 LDGQSLEGRALRVNVA 290 LD + GR LRV A Sbjct: 352 LDDTPMRGRQLRVRFA 367
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R++VGNLP + + LF+++G+ + + + +GFGF+ + S+ + A A Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFI------NKGKGFGFIKLESRALAEIAKAE 343 Query: 337 LDGQSLEGRALRVNVA 290 LD + GR LRV A Sbjct: 344 LDDTPMRGRQLRVRFA 359
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/77 (37%), Positives = 43/77 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I+V NL ++V +L E+FS G V A + D+D G+SRG G VT E AI+ Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 284 Query: 334 DGQSLEGRALRVNVAEE 284 +GQ L R + V + ++ Sbjct: 285 NGQFLFDRPMHVKMDDK 301 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I+V NLP+ + +L E FS+ G V+ A + + G+S+G G V S E + A Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFESAESAEKACRI 572 Query: 337 LDGQSLEGRALRVNV 293 ++G + GR + V + Sbjct: 573 MNGIKISGREIDVRL 587 Score = 35.8 bits (81), Expect = 0.078 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEH-GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 R+++ N+P+ + + +L E G+V + D + G+SRG G V +E + A+ Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 150 Query: 340 ALDGQSLEGRALRV 299 ++ L GR L + Sbjct: 151 TMNKYDLSGRPLNI 164
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 45.4 bits (106), Expect = 1e-04 Identities = 23/78 (29%), Positives = 40/78 (51%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+++ N+ + + +LFS G++ + V D TG+S+GF +V + +A Sbjct: 346 RLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVE 405 Query: 337 LDGQSLEGRALRVNVAEE 284 LD Q +GR L + EE Sbjct: 406 LDKQIFQGRLLHILPGEE 423 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/85 (34%), Positives = 44/85 (51%) Frame = -1 Query: 538 RDSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEE 359 + + S +I V NLP++ + ELF+ G++ RV D +RGF FV +E Sbjct: 757 KSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKE 815 Query: 358 LDDAIAALDGQSLEGRALRVNVAEE 284 ++A+ L G L GR L + AEE Sbjct: 816 AENAMDQLHGVHLLGRRLVMQYAEE 840 Score = 38.1 bits (87), Expect = 0.016 Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 5/85 (5%) Frame = -1 Query: 529 GSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQ 365 G + I++ NL + + L + F V A+V D S GFGFV ++ Sbjct: 660 GPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRTK 719 Query: 364 EELDDAIAALDGQSLEGRALRVNVA 290 E+ + IAA+DG ++G +++ ++ Sbjct: 720 EQANAVIAAMDGTVIDGHKIQLKLS 744 Score = 35.8 bits (81), Expect = 0.078 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 15/92 (16%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGK---------------VVDARVVYDRDTGRSRGFGF 383 RI V LP + D L E F++ + + D +++ DR+ G SR FGF Sbjct: 3 RIIVKGLPVYLTDDNLREHFTKRLRQKHSHQAVNGSGPDLITDVKILRDRN-GESRRFGF 61 Query: 382 VTMASQEELDDAIAALDGQSLEGRALRVNVAE 287 + ++E+ DA+ +G + + V++A+ Sbjct: 62 IGYRNEEDAFDAVEYFNGSFINTSKIEVSMAK 93
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/79 (31%), Positives = 46/79 (58%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +F++++GNL + + L LF ++G VV+ VV + +GFV M ++++ DAI Sbjct: 6 TFKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAI 57 Query: 343 AALDGQSLEGRALRVNVAE 287 L+G +L A++V A+ Sbjct: 58 QNLNGYTLNEFAIKVEAAK 76 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/76 (32%), Positives = 44/76 (57%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I+VGNL + + ELF ++G VV+ +V R +GFV + ++ DAI Sbjct: 87 KIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGDVQDAIKE 138 Query: 337 LDGQSLEGRALRVNVA 290 L+G+ ++G+ L+V V+ Sbjct: 139 LNGRVVDGQPLKVQVS 154
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/72 (37%), Positives = 37/72 (51%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I+VGNL + L E FS+ GKVV A ++ R G RG G V + +++D AI Sbjct: 138 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVDRAIRQY 195 Query: 334 DGQSLEGRALRV 299 DG R + V Sbjct: 196 DGAFFMDRKIFV 207 Score = 35.8 bits (81), Expect = 0.078 Identities = 24/76 (31%), Positives = 36/76 (47%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 IY NLP+ S L +LF GKV +A + YD G G V + ++ D I L Sbjct: 353 IYCSNLPFSTAKSDLYDLFETIGKVNNAELRYD-SKGAPTGIAVVEYDNVDDADVCIERL 411 Query: 334 DGQSLEGRALRVNVAE 287 + + G L ++ A+ Sbjct: 412 NNYNYGGCDLDISYAK 427
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/77 (33%), Positives = 41/77 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I+VGNL + LFS++GK+ + +V + FGFV M S+ E D+AI Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQN 54 Query: 337 LDGQSLEGRALRVNVAE 287 L L G A+ V +++ Sbjct: 55 LHHYMLNGMAMNVEMSK 71 Score = 39.3 bits (90), Expect = 0.007 Identities = 22/79 (27%), Positives = 41/79 (51%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 +S +++VGN+ + L F E+G VV+ +V D + FV M E+ +A Sbjct: 76 TSTKLHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAMEA 127 Query: 346 IAALDGQSLEGRALRVNVA 290 I+ LD + +G+ + V ++ Sbjct: 128 ISGLDNTAFQGKLMSVKLS 146
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/79 (32%), Positives = 40/79 (50%) Frame = -1 Query: 526 SSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDA 347 S +I++G LP ++D ++ EL GK+ +V D TG S+G+ F D + Sbjct: 205 SPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQS 264 Query: 346 IAALDGQSLEGRALRVNVA 290 IA L+G L + L V A Sbjct: 265 IAGLNGMQLGDKKLIVQRA 283 Score = 37.0 bits (84), Expect = 0.035 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 5/78 (6%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVD-----ARVVYDRDTGRSRGFGFVTMASQEELD 353 R+YVGN+P+ V + ++E F++ +V V + F F+ S +E Sbjct: 94 RLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETT 153 Query: 352 DAIAALDGQSLEGRALRV 299 A+ A DG +L+G++L++ Sbjct: 154 QAM-AFDGINLKGQSLKI 170
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 471 Score = 45.4 bits (106), Expect = 1e-04 Identities = 20/80 (25%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Frame = -1 Query: 529 GSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 G +F+ ++V + + +S+L F +G + +VY++ +G+ RG+ F+ + ++ Sbjct: 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMH 158 Query: 352 DAIAALDGQSLEGRALRVNV 293 A DG+ ++GR + V+V Sbjct: 159 SAYKHADGKKIDGRRVLVDV 178
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/77 (37%), Positives = 43/77 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I+V NL ++V +L E+FS G V A + D+D G+SRG G VT E AI+ Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKD-GKSRGMGTVTFEQAIEAVQAISMF 293 Query: 334 DGQSLEGRALRVNVAEE 284 +GQ L R + V + ++ Sbjct: 294 NGQFLFDRPMHVKMDDK 310 Score = 41.6 bits (96), Expect = 0.001 Identities = 24/75 (32%), Positives = 41/75 (54%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 +I+V NLP+ + +L E FS+ G V+ A + + G+S+G G V S E + A Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI--KMENGKSKGCGTVRFDSPESAEKACRI 581 Query: 337 LDGQSLEGRALRVNV 293 ++G + GR + V + Sbjct: 582 MNGIKISGREIDVRL 596 Score = 35.8 bits (81), Expect = 0.078 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEH-GKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 R+++ N+P+ + + +L E G+V + D + G+SRG G V +E + A+ Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAE-GKSRGCGVVEFKDEEFVKKALE 159 Query: 340 ALDGQSLEGRALRV 299 ++ L GR L + Sbjct: 160 TMNKYDLSGRPLNI 173
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/77 (33%), Positives = 43/77 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VG LP +L ELFS+ G V VV ++ + RGFG+VT + E++ A+ + Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 334 DGQSLEGRALRVNVAEE 284 + EG + V VA++ Sbjct: 65 --TTFEGCKINVTVAKK 79 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +++ NL + ++ L EL + G++ R+V DT S+G F +QE + A Sbjct: 336 VFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLLAA 395 Query: 334 D------GQSLEGRALRVNVA 290 G L+GR L+V++A Sbjct: 396 SPENEAGGLKLDGRQLKVDLA 416 Score = 39.7 bits (91), Expect = 0.005 Identities = 21/76 (27%), Positives = 42/76 (55%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+ + NL ++ + L +F++ G V++ + D G+ RGFGFV + E A+ Sbjct: 114 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPD-GKMRGFGFVQFKNLLEAGKALKG 172 Query: 337 LDGQSLEGRALRVNVA 290 ++ + ++GR + V+ A Sbjct: 173 MNMKEIKGRTVAVDWA 188
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/74 (29%), Positives = 42/74 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +++ +LP + D L+++F G VV A+V D+ T S+ FGFV+ + AI ++ Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462 Query: 334 DGQSLEGRALRVNV 293 +G + + L+V + Sbjct: 463 NGFQIGMKRLKVQL 476 Score = 34.3 bits (77), Expect = 0.23 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G + + ++ + +FS G++ + R++ D G SRG FVT ++ AI A Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRTMAQTAIKA 167 Query: 337 L-DGQSLEG 314 + Q++EG Sbjct: 168 MHQAQTMEG 176 Score = 32.7 bits (73), Expect = 0.66 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTG--RSRGFGFVTMASQEELDD 350 + +++VG +P + L ELF ++G V + ++ DR +S+G FVT +++ + Sbjct: 15 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALE 74 Query: 349 AIAAL 335 A AL Sbjct: 75 AQNAL 79
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/74 (29%), Positives = 42/74 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +++ +LP + D L+++F G VV A+V D+ T S+ FGFV+ + AI ++ Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462 Query: 334 DGQSLEGRALRVNV 293 +G + + L+V + Sbjct: 463 NGFQIGMKRLKVQL 476 Score = 34.3 bits (77), Expect = 0.23 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++G + + ++ + +FS G++ + R++ D G SRG FVT ++ AI A Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKA 167 Query: 337 L-DGQSLEG 314 + Q++EG Sbjct: 168 MHQAQTMEG 176 Score = 33.1 bits (74), Expect = 0.50 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTG--RSRGFGFVTMASQEELDD 350 + +++VG +P + L ELF ++G V + V+ DR +S+G FVT +++ + Sbjct: 15 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALE 74 Query: 349 AIAAL 335 A AL Sbjct: 75 AQNAL 79
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R++VGNLP + + + +LF ++GK + + D +GFGF+ + ++ + A Sbjct: 80 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVE 133 Query: 337 LDGQSLEGRALRVNVA 290 LD L G+ LRV A Sbjct: 134 LDNMPLRGKQLRVRFA 149
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/77 (28%), Positives = 40/77 (51%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGNL + V D L + F G +V R+ D+G+ +GF F+ ++E + + Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDK 300 Query: 334 DGQSLEGRALRVNVAEE 284 + + GR LR+ E+ Sbjct: 301 SCRKIAGRPLRMEYGED 317
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 45.1 bits (105), Expect = 1e-04 Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Frame = -1 Query: 529 GSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 G +F+ ++V + + +S+L F +G + +VY + +G+ RG+ F+ + ++ Sbjct: 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 Query: 352 DAIAALDGQSLEGRALRVNV 293 A DG+ ++GR + V+V Sbjct: 159 SAYKHADGKKIDGRRVLVDV 178
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 45.1 bits (105), Expect = 1e-04 Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Frame = -1 Query: 529 GSSFR-IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 G +F+ ++V + + +S+L F +G + +VY + +G+ RG+ F+ + ++ Sbjct: 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 Query: 352 DAIAALDGQSLEGRALRVNV 293 A DG+ ++GR + V+V Sbjct: 159 SAYKHADGKKIDGRRVLVDV 178
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R++VGNLP + + + +LF ++GK + + D +GFGF+ + ++ + A Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVE 128 Query: 337 LDGQSLEGRALRVNVA 290 LD L G+ LRV A Sbjct: 129 LDNMPLRGKQLRVRFA 144
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R++VGNLP + + + +LF ++GK + + D +GFGF+ + ++ + A Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVE 128 Query: 337 LDGQSLEGRALRVNVA 290 LD L G+ LRV A Sbjct: 129 LDNMPLRGKQLRVRFA 144
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/76 (31%), Positives = 41/76 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R++VGNLP + + + +LF ++GK + + D +GFGF+ + ++ + A Sbjct: 77 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVE 130 Query: 337 LDGQSLEGRALRVNVA 290 LD L G+ LRV A Sbjct: 131 LDNMPLRGKQLRVRFA 146
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/78 (33%), Positives = 43/78 (55%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 + YVGNLP+ + +F + + R+V D+DT + +GF +V + L +A+ Sbjct: 41 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98 Query: 340 ALDGQSLEGRALRVNVAE 287 DG L R+LRV++AE Sbjct: 99 TYDGALLGDRSLRVDIAE 116
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/78 (33%), Positives = 43/78 (55%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 + YVGNLP+ + +F + + R+V D+DT + +GF +V + L +A+ Sbjct: 41 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98 Query: 340 ALDGQSLEGRALRVNVAE 287 DG L R+LRV++AE Sbjct: 99 TYDGALLGDRSLRVDIAE 116
>RBMS2_MOUSE (Q8VC70) RNA-binding motif, single-stranded-interacting protein 2| Length = 383 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D S +Y+ L D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 53 DQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSSA 112 Query: 355 DDAIAALDGQSLEGR 311 A+ AL ++ + Sbjct: 113 QKAVTALKASGVQAQ 127 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/66 (31%), Positives = 37/66 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ NLP +D+ L + G+V+ R++ D +G SRG GF M S E+ + I Sbjct: 139 LYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGASRGVGFARMESTEKCEAIITHF 197 Query: 334 DGQSLE 317 +G+ ++ Sbjct: 198 NGKYIK 203
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 266 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGNL +V + L ELF + G V+ ++ D+D G+ + F FV + + A+ L Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70 Query: 334 DGQSLEGRALRV 299 +G L GR +++ Sbjct: 71 NGIKLYGRPIKI 82
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/77 (33%), Positives = 43/77 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VG LP +L ELFS+ G V VV ++ + RGFG+VT + E++ A+ + Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 334 DGQSLEGRALRVNVAEE 284 + EG + V VA++ Sbjct: 65 --TTFEGCKIDVTVAKK 79 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 6/81 (7%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +++ NL + ++ L E+ + G + RVV DT S+G F +QE +AA Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 385 Query: 334 D------GQSLEGRALRVNVA 290 G L+GR L+V++A Sbjct: 386 SPEAEGGGLKLDGRQLKVDLA 406 Score = 36.6 bits (83), Expect = 0.045 Identities = 20/76 (26%), Positives = 40/76 (52%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+ + NL ++ + L +F+ +G V++ + D G+ RGF FV + E A+ Sbjct: 114 RLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPD-GKMRGFAFVQFKNLLEAGKALKG 172 Query: 337 LDGQSLEGRALRVNVA 290 + + ++GR + V+ A Sbjct: 173 ANMKEIKGRTVAVDWA 188
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 44.7 bits (104), Expect = 2e-04 Identities = 20/51 (39%), Positives = 33/51 (64%) Frame = -1 Query: 439 VDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 287 + AR+V DRDTG S+GFGFV +S E+ A A++ ++G + ++ A+ Sbjct: 577 ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627 Score = 38.5 bits (88), Expect = 0.012 Identities = 18/77 (23%), Positives = 43/77 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++V NLP++V + + +F ++ R+V +++ G S+G ++ ++ E + A+ Sbjct: 373 LFVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKE-GSSKGMAYIEFKTEAEAEKALEEK 428 Query: 334 DGQSLEGRALRVNVAEE 284 G ++GRA+ ++ E Sbjct: 429 QGTEVDGRAMVIDYTGE 445
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGNL +V + L ELF + G V+ ++ D+D G+ + F FV + + A+ L Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70 Query: 334 DGQSLEGRALRV 299 +G L GR +++ Sbjct: 71 NGIKLFGRPIKI 82
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++G LP + + L+ L + GK+ + R++ D + G +RG+ FVT ++++E +AI L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDFN-GNNRGYAFVTFSNKQEAKNAIKQL 116 Query: 334 DGQSLE-GRALRV 299 + + GR L V Sbjct: 117 NNYEIRTGRLLGV 129
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/73 (32%), Positives = 44/73 (60%), Gaps = 1/73 (1%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I++G LP + + L+ L + GK+ + R++ D + G +RG+ FVT ++++E +AI L Sbjct: 58 IFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN-GNNRGYAFVTFSNKQEAKNAIKQL 116 Query: 334 DGQSL-EGRALRV 299 + + GR L V Sbjct: 117 NNYEIRNGRLLGV 129
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/62 (40%), Positives = 37/62 (59%) Frame = -1 Query: 472 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 293 L LFS++GKVV A+VV + + +R +GFVTM++ EE I L L G+ + V Sbjct: 422 LKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 481 Query: 292 AE 287 A+ Sbjct: 482 AK 483
>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2| (Suppressor of CDC2 with RNA-binding motif 3) Length = 407 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/66 (31%), Positives = 37/66 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 +Y+ NLP +D+ L + G+V+ R++ D +G SRG GF M S E+ + I Sbjct: 137 LYISNLPLSMDEQELEGMLKPFGQVISTRILRD-TSGTSRGVGFARMESTEKCEAIITHF 195 Query: 334 DGQSLE 317 +G+ ++ Sbjct: 196 NGKYIK 201 Score = 44.3 bits (103), Expect = 2e-04 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = -1 Query: 535 DSGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEEL 356 D S +Y+ L D LV+L +GK+V + + D+ T + +G+GFV S Sbjct: 51 DQLSKTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAA 110 Query: 355 DDAIAALDGQSLEGR 311 A+ AL ++ + Sbjct: 111 QKAVTALKASGVQAQ 125
>DAZ1_CAEEL (Q20870) DAZ protein 1| Length = 499 Score = 43.9 bits (102), Expect = 3e-04 Identities = 24/75 (32%), Positives = 45/75 (60%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 RI+VG P ++ L E F + V D ++V D G+S+G+GF+T ++++ ++ I Sbjct: 68 RIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLD-GQSKGYGFITFETEDQAEE-IRK 125 Query: 337 LDGQSLEGRALRVNV 293 L + LE R+ ++N+ Sbjct: 126 LTPKQLEFRSRKLNL 140
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 43.9 bits (102), Expect = 3e-04 Identities = 23/72 (31%), Positives = 41/72 (56%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++VGNL +V + L ELF + G V+ ++ D+D G+ + F FV + + A+ L Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKLKQFAFVNFKHEVSVPYAMNLL 70 Query: 334 DGQSLEGRALRV 299 +G L GR +++ Sbjct: 71 NGIKLFGRPIKI 82
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 43.9 bits (102), Expect = 3e-04 Identities = 27/76 (35%), Positives = 40/76 (52%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 SG S +I + NLP++ + +LFS G++ R+ D +RGFGFV ++ E Sbjct: 715 SGGSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFD-NTTRGFGFVEYSTVREAQ 773 Query: 352 DAIAALDGQSLEGRAL 305 A+ AL L GR L Sbjct: 774 SAMEALKHTHLLGRHL 789 Score = 43.5 bits (101), Expect = 4e-04 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = -1 Query: 523 SFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 S R+++ NLP+ ++ F G V + D+ T S+G FV+ + A Sbjct: 313 SGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAY 372 Query: 343 AALDGQSLEGRALRV 299 A DG + +GR L + Sbjct: 373 RAKDGSTFQGRLLHL 387 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+ V LP + D+RL E FS+ G V D +++ R G SR FGFV S++E A+ Sbjct: 3 RLIVRGLPSYLTDARLREHFSQKGAVTDVKLM-RRPDGTSRKFGFVGYRSEQEAQQALDY 61 Query: 337 LDGQSLEGRALRVNVAEE 284 + ++ + + +A++ Sbjct: 62 FNRTFIDTSRISIELAKK 79 Score = 35.4 bits (80), Expect = 0.10 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGR-----SRGFGFVTMASQEELDD 350 +YV NL + D RL F AR+ D R S G+GFV S + Sbjct: 623 LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAART 682 Query: 349 AIAALDGQSLEGRALRVNVA 290 A A+DG+ L+ L V A Sbjct: 683 AQKAMDGKVLDAHTLVVTFA 702
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 43.9 bits (102), Expect = 3e-04 Identities = 25/62 (40%), Positives = 36/62 (58%) Frame = -1 Query: 472 LVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNV 293 L LFS +GKVV A+VV + + +R +GFVTM++ EE I L L G+ + V Sbjct: 444 LKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVEK 503 Query: 292 AE 287 A+ Sbjct: 504 AK 505
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 43.5 bits (101), Expect = 4e-04 Identities = 18/76 (23%), Positives = 41/76 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++ LP+ L E+ HG V D R+V +R G+ +G +V ++ + A+ Sbjct: 820 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMK 878 Query: 337 LDGQSLEGRALRVNVA 290 +DG +++ ++V ++ Sbjct: 879 MDGMTIKENVIKVAIS 894
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 43.5 bits (101), Expect = 4e-04 Identities = 21/73 (28%), Positives = 43/73 (58%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 I+VGN+ V ++ + F + G++ ++YDR+TG +G+G++ S + A+ L Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKAL-QL 124 Query: 334 DGQSLEGRALRVN 296 +G L+G+ + V+ Sbjct: 125 NGGELKGKKIAVS 137
>HNRPC_XENLA (P19600) Heterogeneous nuclear ribonucleoprotein C (hnRNP core| protein C) Length = 282 Score = 43.5 bits (101), Expect = 4e-04 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVE-LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 R+++GNL V VE +FS++GK+V V +GF FV +++ A+A Sbjct: 18 RVFIGNLNTLVVKKTDVEAIFSKYGKIVGCSV--------HKGFAFVQFSNERTARTAVA 69 Query: 340 ALDGQSLEGRALRVNVAEE 284 DG+ + G+ L +N+A E Sbjct: 70 GEDGRMIAGQVLDINLAAE 88
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 43.5 bits (101), Expect = 4e-04 Identities = 21/58 (36%), Positives = 33/58 (56%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAI 344 +++VG L D+ L E F + G VV +++ D+ TG+ RGF FV + +D AI Sbjct: 124 KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAI 181 Score = 43.5 bits (101), Expect = 4e-04 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA- 341 ++++G L + L + + GKVVD V+ D T RSRGFGF+T +D A Sbjct: 33 KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQEN 92 Query: 340 ---ALDGQSLEGR 311 +DG+++E + Sbjct: 93 RPHIIDGKTVEAK 105
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 43.5 bits (101), Expect = 4e-04 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Frame = -1 Query: 520 FRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSR----GFGFVTMASQEELD 353 FR++VG L S + LF G V + + R +R G FVT +QE++D Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVD 103 Query: 352 DAIAALDGQSLEGRALRVNVA 290 AI L+G++L+ R + V A Sbjct: 104 KAIETLNGKTLDDREIVVQKA 124 Score = 31.2 bits (69), Expect = 1.9 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 12/87 (13%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKV------------VDARVVYDRDTGRSRGFGFVTMA 371 IYV L + + L E+F + + R+ + R RGFGFV+ A Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266 Query: 370 SQEELDDAIAALDGQSLEGRALRVNVA 290 + E+ AI ++G+ + L V A Sbjct: 267 NAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 43.1 bits (100), Expect = 5e-04 Identities = 18/76 (23%), Positives = 41/76 (53%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 ++++ LP+ L E+ HG V D R+V +R G+ +G +V ++ + A+ Sbjct: 802 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMK 860 Query: 337 LDGQSLEGRALRVNVA 290 +DG +++ ++V ++ Sbjct: 861 MDGMTIKENIIKVAIS 876
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/76 (31%), Positives = 42/76 (55%) Frame = -1 Query: 514 IYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAAL 335 ++V L ++ L + F + G V DA++V D+ +GRS+G +V ++ + AI AL Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI-AL 300 Query: 334 DGQSLEGRALRVNVAE 287 G+ L G + V + E Sbjct: 301 SGKRLLGLPVIVQLTE 316 Score = 38.5 bits (88), Expect = 0.012 Identities = 24/109 (22%), Positives = 47/109 (43%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+ V N+ + + D + +F G + + D D RS+GFG++ + +A+ Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEK 399 Query: 337 LDGQSLEGRALRVNVAEEXXXXXXXXRYIWRCTTTRLLRKRHDSTPDTG 191 ++G L GR +RV + + + R T ++R + G Sbjct: 400 MNGFDLAGRNMRVCLGNDKFTTETTSSMLKRFDETLARQERSQPSQRNG 448
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 42.7 bits (99), Expect = 6e-04 Identities = 27/82 (32%), Positives = 43/82 (52%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S S ++V L + L E F V AR+V DR+TG S+GFGFV S+E+ Sbjct: 568 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAK 624 Query: 352 DAIAALDGQSLEGRALRVNVAE 287 A A++ ++G + ++ A+ Sbjct: 625 AAKEAMEDGEIDGNKVTLDWAK 646 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/80 (27%), Positives = 43/80 (53%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 SG S + + NL + + L E+F + + V G+S+G+ F+ AS E+ Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 537 Query: 352 DAIAALDGQSLEGRALRVNV 293 +A+ + + + +EGRA+R+ + Sbjct: 538 EALNSCNKREIEGRAIRLEL 557 Score = 30.8 bits (68), Expect = 2.5 Identities = 15/66 (22%), Positives = 34/66 (51%) Frame = -1 Query: 502 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 323 NLP++V L E+F + ++ R+V G+S+G ++ ++ + + G Sbjct: 399 NLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 453 Query: 322 LEGRAL 305 ++GR++ Sbjct: 454 IDGRSI 459
>HNRPC_HUMAN (P07910) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 306 Score = 42.7 bits (99), Expect = 6e-04 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVE-LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 R+++GNL V VE +FS++GK+V V +GF FV ++ A+A Sbjct: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERNARAAVA 68 Query: 340 ALDGQSLEGRALRVNVAEE 284 DG+ + G+ L +N+A E Sbjct: 69 GEDGRMIAGQVLDINLAAE 87
>HNRPC_MOUSE (Q9Z204) Heterogeneous nuclear ribonucleoproteins C1/C2 (hnRNP C1 /| hnRNP C2) Length = 313 Score = 42.7 bits (99), Expect = 6e-04 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVE-LFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIA 341 R+++GNL V VE +FS++GK+V V +GF FV ++ A+A Sbjct: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERNARAAVA 68 Query: 340 ALDGQSLEGRALRVNVAEE 284 DG+ + G+ L +N+A E Sbjct: 69 GEDGRMIAGQVLDINLAAE 87
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 42.7 bits (99), Expect = 6e-04 Identities = 27/82 (32%), Positives = 43/82 (52%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 S S ++V L + L E F V AR+V DR+TG S+GFGFV S+E+ Sbjct: 567 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAK 623 Query: 352 DAIAALDGQSLEGRALRVNVAE 287 A A++ ++G + ++ A+ Sbjct: 624 AAKEAMEDGEIDGNKVTLDWAK 645 Score = 41.6 bits (96), Expect = 0.001 Identities = 22/80 (27%), Positives = 43/80 (53%) Frame = -1 Query: 532 SGSSFRIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELD 353 SG S + + NL + + L E+F + + V G+S+G+ F+ AS E+ Sbjct: 481 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDAK 536 Query: 352 DAIAALDGQSLEGRALRVNV 293 +A+ + + + +EGRA+R+ + Sbjct: 537 EALNSCNKREIEGRAIRLEL 556 Score = 30.8 bits (68), Expect = 2.5 Identities = 15/66 (22%), Positives = 34/66 (51%) Frame = -1 Query: 502 NLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAALDGQS 323 NLP++V L E+F + ++ R+V G+S+G ++ ++ + + G Sbjct: 398 NLPYKVTQDELKEVFEDAAEI---RLV--SKDGKSKGIAYIEFKTEADAEKTFEEKQGTE 452 Query: 322 LEGRAL 305 ++GR++ Sbjct: 453 IDGRSI 458
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 42.7 bits (99), Expect = 6e-04 Identities = 23/68 (33%), Positives = 34/68 (50%) Frame = -1 Query: 517 RIYVGNLPWQVDDSRLVELFSEHGKVVDARVVYDRDTGRSRGFGFVTMASQEELDDAIAA 338 R+Y+G LP + D + F +GK+ D + GFGFV Q + DDA+ Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIM--------KNGFGFVDFQDQRDADDAVHD 54 Query: 337 LDGQSLEG 314 L+G+ L G Sbjct: 55 LNGKELCG 62 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,998,384 Number of Sequences: 219361 Number of extensions: 1731577 Number of successful extensions: 6188 Number of sequences better than 10.0: 448 Number of HSP's better than 10.0 without gapping: 5567 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6060 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
