ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPH2_PSEAE (Q9HZ62) Phosphoglycolate phosphatase 2 (EC 3.1.3.18)... 31 2.0
2YIHX_SHIFL (P0A8Y4) Phosphatase yihX (EC 3.1.3.-) 30 3.4
3YIHX_ECOLI (P0A8Y3) Phosphatase yihX (EC 3.1.3.-) 30 3.4
4GLMU_STRSZ (Q8GQP7) Bifunctional protein glmU [Includes: UDP-N-a... 30 4.5
5GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (P... 30 5.9
6GLMU_ANASP (Q8YQB2) Bifunctional protein glmU [Includes: UDP-N-a... 29 7.7
7GCR_XENLA (P49844) Glucocorticoid receptor (GR) 29 10.0

>GPH2_PSEAE (Q9HZ62) Phosphoglycolate phosphatase 2 (EC 3.1.3.18) (PGPase2)|
           (PGP 2)
          Length = 226

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 527 GTNPRRTLFLDDNERNIASGKALGLRTALV 438
           G +P R LF+ D+ R+I SG+  G +TA V
Sbjct: 160 GIDPSRVLFIGDDLRDIESGRDAGTKTAAV 189



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>YIHX_SHIFL (P0A8Y4) Phosphatase yihX (EC 3.1.3.-)|
          Length = 199

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 539 LRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 438
           L+  G +P  T+F DDN  NI     LG+ + LV
Sbjct: 151 LQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184



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>YIHX_ECOLI (P0A8Y3) Phosphatase yihX (EC 3.1.3.-)|
          Length = 199

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 539 LRVAGTNPRRTLFLDDNERNIASGKALGLRTALV 438
           L+  G +P  T+F DDN  NI     LG+ + LV
Sbjct: 151 LQAEGFSPSDTVFFDDNADNIEGANQLGITSILV 184



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>GLMU_STRSZ (Q8GQP7) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 460

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +3

Query: 141 RLITTSYIQEGSLISDAALWTGSV*IGAGHDQSVGRSCLDGRGLDDGVQLGPHA 302
           R+ + S I  GS I D+ L  G V         V +S ++G  L DGV +GP+A
Sbjct: 285 RIGSRSVITNGSYILDSRLGEGVV---------VSQSVIEGSVLADGVTVGPYA 329



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>GPH_AQUAE (O67359) Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP)|
          Length = 213

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 539 LRVAGTNPRRTLFLDDNERNIASGKALGLRTAL 441
           L + G  P + L + D + +I +GK  G +TAL
Sbjct: 147 LEILGEEPEKALIVGDTDADIEAGKRAGTKTAL 179



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>GLMU_ANASP (Q8YQB2) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 451

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 24/77 (31%), Positives = 36/77 (46%)
 Frame = +3

Query: 117 IIKHQDSIRLITTSYIQEGSLISDAALWTGSV*IGAGHDQSVGRSCLDGRGLDDGVQLGP 296
           II+ Q  +R  T   IQ GS I   +L   S     G + +V  S +    + DG ++GP
Sbjct: 269 IIEPQTHLRGSTV--IQSGSRIGPGSLIENSQ---LGANVTVHYSVVTDSTIQDGTKIGP 323

Query: 297 HALVPLHVVVGLQLAVG 347
           +A +  H  VG    +G
Sbjct: 324 YAHLRGHAQVGANCRIG 340



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>GCR_XENLA (P49844) Glucocorticoid receptor (GR)|
          Length = 776

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +3

Query: 336 LAVGRAAPDLRDGSPEAADGLQRVVRLLAPRPLANQGCAEAESFSRRDVPLVVVEEERST 515
           L+ G     L DG+    D  + ++   A RP++ Q   E E +     P VV EE+   
Sbjct: 242 LSEGSKTLSLEDGTQRLGDHAKDMLLPSADRPIS-QVKTEKEDYIELCTPGVVNEEKFGP 300

Query: 516 WVCAGDAQGGG 548
             C G+  G G
Sbjct: 301 VYCVGNFSGSG 311


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,116,595
Number of Sequences: 219361
Number of extensions: 1333118
Number of successful extensions: 6147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6144
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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