ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd3a05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108507.1| Zea mays PCO092437 mRNA sequence Length = 1277 Score = 212 bits (107), Expect = 9e-52 Identities = 167/187 (89%) Strand = Plus / Minus Query: 353 cgccccagatctccgggatggctcgccggaggccgccgatggtctccagcgcgtagtccg 412 |||||||||||||||||||||| |||||||| |||||||| |||||| ||||||||||| Sbjct: 816 cgccccagatctccgggatggcccgccggagcgcgccgatgctctccaccgcgtagtccg 757 Query: 413 cctccttgctcctcgccctcttgccaaccagggctgtgcggaggccgagagcttttcccg 472 | |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| Sbjct: 756 cttccttgctcctcgccctcttgccaaccagggcggtgcggaggccgagcgctttccccg 697 Query: 473 acgcgatgttcctctcgttgtcgtcgaggaagagcgttcgacgtgggtttgtgccggcga 532 ||||||||||||||| ||||||| ||||| ||||| || |||||||| | ||| ||| Sbjct: 696 cggcgatgttcctctcgctgtcgtccaggaacagcgtccggcgtgggttggagccagcgg 637 Query: 533 cgcgcag 539 ||||||| Sbjct: 636 cgcgcag 630 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 tggatggacgtgggctggatga 277 |||||||||||||||||||||| Sbjct: 922 tggatggacgtgggctggatga 901
>ref|XM_469419.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1219 Score = 210 bits (106), Expect = 4e-51 Identities = 169/190 (88%) Strand = Plus / Minus Query: 350 cgccgccccagatctccgggatggctcgccggaggccgccgatggtctccagcgcgtagt 409 |||||||||| ||||||||||||||||||||||||| ||||||| |||| || ||||||| Sbjct: 808 cgccgccccaaatctccgggatggctcgccggaggctgccgatgctctcaagagcgtagt 749 Query: 410 ccgcctccttgctcctcgccctcttgccaaccagggctgtgcggaggccgagagcttttc 469 | ||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||| Sbjct: 748 cggcctccttgctcctcaccctcttgccaaccaggacggtgcggaggctaagagcttttc 689 Query: 470 ccgacgcgatgttcctctcgttgtcgtcgaggaagagcgttcgacgtgggtttgtgccgg 529 | | ||||||||||||||| ||||||||||||||||||| || |||| || ||||||| Sbjct: 688 ctgcggcgatgttcctctcgctgtcgtcgaggaagagcgtccggtgtggattggtgccgg 629 Query: 530 cgacgcgcag 539 ||| |||||| Sbjct: 628 cgatgcgcag 619
>dbj|AK099563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034L20, full insert sequence Length = 1147 Score = 210 bits (106), Expect = 4e-51 Identities = 169/190 (88%) Strand = Plus / Minus Query: 350 cgccgccccagatctccgggatggctcgccggaggccgccgatggtctccagcgcgtagt 409 |||||||||| ||||||||||||||||||||||||| ||||||| |||| || ||||||| Sbjct: 807 cgccgccccaaatctccgggatggctcgccggaggctgccgatgctctcaagagcgtagt 748 Query: 410 ccgcctccttgctcctcgccctcttgccaaccagggctgtgcggaggccgagagcttttc 469 | ||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||| Sbjct: 747 cggcctccttgctcctcaccctcttgccaaccaggacggtgcggaggctaagagcttttc 688 Query: 470 ccgacgcgatgttcctctcgttgtcgtcgaggaagagcgttcgacgtgggtttgtgccgg 529 | | ||||||||||||||| ||||||||||||||||||| || |||| || ||||||| Sbjct: 687 ctgcggcgatgttcctctcgctgtcgtcgaggaagagcgtccggtgtggattggtgccgg 628 Query: 530 cgacgcgcag 539 ||| |||||| Sbjct: 627 cgatgcgcag 618
>dbj|AK061528.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D11, full insert sequence Length = 1112 Score = 210 bits (106), Expect = 4e-51 Identities = 169/190 (88%) Strand = Plus / Minus Query: 350 cgccgccccagatctccgggatggctcgccggaggccgccgatggtctccagcgcgtagt 409 |||||||||| ||||||||||||||||||||||||| ||||||| |||| || ||||||| Sbjct: 791 cgccgccccaaatctccgggatggctcgccggaggctgccgatgctctcaagagcgtagt 732 Query: 410 ccgcctccttgctcctcgccctcttgccaaccagggctgtgcggaggccgagagcttttc 469 | ||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||| Sbjct: 731 cggcctccttgctcctcaccctcttgccaaccaggacggtgcggaggctaagagcttttc 672 Query: 470 ccgacgcgatgttcctctcgttgtcgtcgaggaagagcgttcgacgtgggtttgtgccgg 529 | | ||||||||||||||| ||||||||||||||||||| || |||| || ||||||| Sbjct: 671 ctgcggcgatgttcctctcgctgtcgtcgaggaagagcgtccggtgtggattggtgccgg 612 Query: 530 cgacgcgcag 539 ||| |||||| Sbjct: 611 cgatgcgcag 602
>dbj|AK061982.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A11, full insert sequence Length = 1144 Score = 202 bits (102), Expect = 9e-49 Identities = 168/190 (88%) Strand = Plus / Minus Query: 350 cgccgccccagatctccgggatggctcgccggaggccgccgatggtctccagcgcgtagt 409 |||||||||| ||||||||||||||||||||||||| ||||||| |||| || ||||||| Sbjct: 808 cgccgccccaaatctccgggatggctcgccggaggctgccgatgctctcaagagcgtagt 749 Query: 410 ccgcctccttgctcctcgccctcttgccaaccagggctgtgcggaggccgagagcttttc 469 | ||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||| Sbjct: 748 cggcctccttgctcctcaccctcttgccaaccaggacggtgcggaggctaagagcttttc 689 Query: 470 ccgacgcgatgttcctctcgttgtcgtcgaggaagagcgttcgacgtgggtttgtgccgg 529 | | ||||||||||||||| |||||||||||||||||| || |||| || ||||||| Sbjct: 688 ctgcggcgatgttcctctcgccgtcgtcgaggaagagcgtccggtgtggattggtgccgg 629 Query: 530 cgacgcgcag 539 ||| |||||| Sbjct: 628 cgatgcgcag 619
>emb|X82617.1|ZMSSIP Z.mays mRNA for sugar-starvation induced protein Length = 1022 Score = 170 bits (86), Expect = 3e-39 Identities = 166/189 (87%), Gaps = 4/189 (2%) Strand = Plus / Minus Query: 353 cgccccagatctccgggatggctcgccggag--gccgccgatggtctccagcgcgtagtc 410 |||||||||||||||||||| | |||||||| || ||||||| |||||| | |||||| Sbjct: 577 cgccccagatctccgggatgcc-cgccggagcggcggccgatgctctccacag-gtagtc 520 Query: 411 cgcctccttgctcctcgccctcttgccaaccagggctgtgcggaggccgagagcttttcc 470 ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| || Sbjct: 519 cgcttccttgctcctcgccctcttgccaaccagggcggtgcggaggccgagcgctttccc 460 Query: 471 cgacgcgatgttcctctcgttgtcgtcgaggaagagcgttcgacgtgggtttgtgccggc 530 || ||||||||||||||| ||||||| ||||| ||||| || |||||||| | |||||| Sbjct: 459 cgcggcgatgttcctctcgctgtcgtccaggaacagcgtccggcgtgggttggagccggc 400 Query: 531 gacgcgcag 539 | ||||||| Sbjct: 399 ggcgcgcag 391 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 256 tggatggacgtgggctggatga 277 |||||||||||||||||||||| Sbjct: 683 tggatggacgtgggctggatga 662
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Minus Query: 350 cgccgccccagatctccgggatggctcgccggaggccgccgatggtctccagcgcgtagt 409 |||||||||| ||||||||||||||||||||||||| ||||||| |||| || ||||||| Sbjct: 98685 cgccgccccaaatctccgggatggctcgccggaggctgccgatgctctcaagagcgtagt 98626 Query: 410 ccgcctccttgctcctcgccctcttgccaacc 441 | ||||||||||||||| |||||||||||||| Sbjct: 98625 cggcctccttgctcctcaccctcttgccaacc 98594 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 439 accagggctgtgcggaggccgagagcttttcccgacgcgatgttcctctcgttgtcgtcg 498 |||||| | |||||||||| ||||||||||| | ||||||||||||||| |||||||| Sbjct: 97583 accaggacggtgcggaggctaagagcttttcctgcggcgatgttcctctcgctgtcgtcg 97524 Query: 499 aggaagagc 507 ||||||||| Sbjct: 97523 aggaagagc 97515
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Minus Query: 350 cgccgccccagatctccgggatggctcgccggaggccgccgatggtctccagcgcgtagt 409 |||||||||| ||||||||||||||||||||||||| ||||||| |||| || ||||||| Sbjct: 27854555 cgccgccccaaatctccgggatggctcgccggaggctgccgatgctctcaagagcgtagt 27854496 Query: 410 ccgcctccttgctcctcgccctcttgccaacc 441 | ||||||||||||||| |||||||||||||| Sbjct: 27854495 cggcctccttgctcctcaccctcttgccaacc 27854464 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 439 accagggctgtgcggaggccgagagcttttcccgacgcgatgttcctctcgttgtcgtcg 498 |||||| | |||||||||| ||||||||||| | ||||||||||||||| |||||||| Sbjct: 27853453 accaggacggtgcggaggctaagagcttttcctgcggcgatgttcctctcgctgtcgtcg 27853394 Query: 499 aggaagagc 507 ||||||||| Sbjct: 27853393 aggaagagc 27853385
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Minus Query: 350 cgccgccccagatctccgggatggctcgccggaggccgccgatggtctccagcgcgtagt 409 |||||||||| ||||||||||||||||||||||||| ||||||| |||| || ||||||| Sbjct: 27945879 cgccgccccaaatctccgggatggctcgccggaggctgccgatgctctcaagagcgtagt 27945820 Query: 410 ccgcctccttgctcctcgccctcttgccaacc 441 | ||||||||||||||| |||||||||||||| Sbjct: 27945819 cggcctccttgctcctcaccctcttgccaacc 27945788 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 439 accagggctgtgcggaggccgagagcttttcccgacgcgatgttcctctcgttgtcgtcg 498 |||||| | |||||||||| ||||||||||| | ||||||||||||||| |||||||| Sbjct: 27944777 accaggacggtgcggaggctaagagcttttcctgcggcgatgttcctctcgctgtcgtcg 27944718 Query: 499 aggaagagc 507 ||||||||| Sbjct: 27944717 aggaagagc 27944709
>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence Length = 127914 Score = 115 bits (58), Expect = 2e-22 Identities = 94/106 (88%) Strand = Plus / Minus Query: 336 ctcgccgtcggccgcgccgccccagatctccgggatggctcgccggaggccgccgatggt 395 ||||||| |||| || |||||||||||||||||||| | |||||||| |||||||| | Sbjct: 12296 ctcgccgccggcgacgacgccccagatctccgggatgacccgccggagcgcgccgatgtt 12237 Query: 396 ctccagcgcgtagtccgcctccttgctcctcgccctcttgccaacc 441 ||||||||||||||| || |||||||||||| |||||||||||||| Sbjct: 12236 ctccagcgcgtagtctgcgtccttgctcctcaccctcttgccaacc 12191 Score = 65.9 bits (33), Expect = 1e-07 Identities = 60/69 (86%) Strand = Plus / Minus Query: 439 accagggctgtgcggaggccgagagcttttcccgacgcgatgttcctctcgttgtcgtcg 498 |||||||| |||||||||||||| ||||| || | | ||||||||||||| ||||||| Sbjct: 11040 accagggcggtgcggaggccgagcgctttcccagcggtgatgttcctctcgctgtcgtcc 10981 Query: 499 aggaagagc 507 ||||||||| Sbjct: 10980 aggaagagc 10972 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 253 gcctggatggacgtgggctggatgacggcgtccagctcggccctcat 299 ||||||||||||||||||||||||| || |||||| |||| |||||| Sbjct: 12379 gcctggatggacgtgggctggatgatggagtccaggtcggacctcat 12333
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Minus Query: 383 ggccgccgatggtctccagcgc 404 |||||||||||||||||||||| Sbjct: 3635096 ggccgccgatggtctccagcgc 3635075
>gb|AE004656.1| Pseudomonas aeruginosa PAO1, section 217 of 529 of the complete genome Length = 13104 Score = 44.1 bits (22), Expect = 0.48 Identities = 22/22 (100%) Strand = Plus / Plus Query: 335 gctcgccgtcggccgcgccgcc 356 |||||||||||||||||||||| Sbjct: 12539 gctcgccgtcggccgcgccgcc 12560
>ref|XM_959815.1| Neurospora crassa OR74A hypothetical protein (NCU09091.1) partial mRNA Length = 1644 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 tctcgttgtcgtcgaggaaga 505 ||||||||||||||||||||| Sbjct: 198 tctcgttgtcgtcgaggaaga 178
>ref|XM_331482.1| Neurospora crassa OR74A hypothetical protein (NCU09091.1) partial mRNA Length = 1644 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 485 tctcgttgtcgtcgaggaaga 505 ||||||||||||||||||||| Sbjct: 198 tctcgttgtcgtcgaggaaga 178
>gb|BC093454.1| Xenopus tropicalis F-box protein 30, mRNA (cDNA clone MGC:97555 IMAGE:5384657), complete cds Length = 4877 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 agctgctttgcttttttgctt 21 ||||||||||||||||||||| Sbjct: 1509 agctgctttgcttttttgctt 1529
>emb|AL499609.9| Human DNA sequence from clone RP11-309N23 on chromosome 1, complete sequence Length = 136515 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 tgctttgcttttttgctttgc 24 ||||||||||||||||||||| Sbjct: 30046 tgctttgcttttttgctttgc 30066
>ref|NM_001016885.2| Xenopus tropicalis F-box protein 30 (fbxo30), mRNA Length = 4877 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 agctgctttgcttttttgctt 21 ||||||||||||||||||||| Sbjct: 1509 agctgctttgcttttttgctt 1529
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 332 gcagctcgccgtcggccgcgccgcc 356 ||||||||||||||||| ||||||| Sbjct: 26211498 gcagctcgccgtcggcctcgccgcc 26211474
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 334 agctcgccgtcggccgcgccgcccc 358 ||||||||||| ||||||||||||| Sbjct: 552741 agctcgccgtccgccgcgccgcccc 552717
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 324 gtcgggctgcagctcgccgtcggcc 348 ||||||| ||||||||||||||||| Sbjct: 170714 gtcgggcagcagctcgccgtcggcc 170738 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 cggccgcgccgccccagatc 363 |||||||||||||||||||| Sbjct: 7464729 cggccgcgccgccccagatc 7464710
>emb|CR388190.30| Zebrafish DNA sequence from clone CH211-284E3, complete sequence Length = 143462 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 4 tgctttgcttttttgctttgcaaca 28 ||||||||||||||| ||||||||| Sbjct: 15660 tgctttgcttttttgttttgcaaca 15636
>emb|CR848579.2| Xenopus tropicalis finished cDNA, clone TEgg041o11 Length = 3392 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 agctgctttgcttttttgctt 21 ||||||||||||||||||||| Sbjct: 1503 agctgctttgcttttttgctt 1523
>dbj|AB055927.1| Procambarus clarkii mRNA for projectin, complete cds Length = 27060 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 442 agggctgtgcggaggccgagagctt 466 ||||||||| ||||||||||||||| Sbjct: 276 agggctgtggggaggccgagagctt 252
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 332 gcagctcgccgtcggccgcgccgcc 356 ||||||||||||||||| ||||||| Sbjct: 26139674 gcagctcgccgtcggcctcgccgcc 26139650
>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144241 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 332 gcagctcgccgtcggccgcgccgcc 356 ||||||||||||||||| ||||||| Sbjct: 101736 gcagctcgccgtcggcctcgccgcc 101712
>gb|AC122350.4| Mus musculus BAC clone RP23-383P18 from chromosome 17, complete sequence Length = 198521 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 agaatcatacatgcctttta 58 |||||||||||||||||||| Sbjct: 168133 agaatcatacatgcctttta 168152
>emb|CR381632.8| Zebrafish DNA sequence from clone DKEY-265M15 in linkage group 3, complete sequence Length = 171119 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 tgctttgcttttttgctttg 23 |||||||||||||||||||| Sbjct: 143244 tgctttgcttttttgctttg 143263
>emb|AL160391.13| Human DNA sequence from clone RP11-121J6 on chromosome 13, complete sequence Length = 166757 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 catgccttttattctgtctg 67 |||||||||||||||||||| Sbjct: 156186 catgccttttattctgtctg 156167
>gb|AC022616.9| Homo sapiens chromosome 8, clone RP11-726G23, complete sequence Length = 191821 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tgatagaatcatacatgcct 54 |||||||||||||||||||| Sbjct: 125811 tgatagaatcatacatgcct 125792
>gb|AC115910.6| Mus musculus, clone RP24-480O17, complete sequence Length = 257036 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 cataattaagcatcaggact 135 |||||||||||||||||||| Sbjct: 85058 cataattaagcatcaggact 85077
>gb|AC100847.2| Homo sapiens chromosome 18, clone RP11-706P11, complete sequence Length = 186784 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 aatcagattgatcacaacat 156 |||||||||||||||||||| Sbjct: 75822 aatcagattgatcacaacat 75803
>emb|AL049696.9|HSJ279A18 Human DNA sequence from clone RP1-279A18 on chromosome 6q13-15 Contains the 3' part of the BCKDHB gene for branched chain keto acid dehydrogenase E1, beta polypeptide (maple syrup urine disease), complete sequence Length = 142707 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 caatcagattgatcacaaca 155 |||||||||||||||||||| Sbjct: 107288 caatcagattgatcacaaca 107307
>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11 Length = 349723 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tcaatcagattgatcacaac 154 |||||||||||||||||||| Sbjct: 34506 tcaatcagattgatcacaac 34525
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 gacggcgtccagctcggccc 295 |||||||||||||||||||| Sbjct: 184961 gacggcgtccagctcggccc 184942
>gb|AC120036.5| Homo sapiens chromosome 8, clone RP11-1134I14, complete sequence Length = 177423 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 tgatagaatcatacatgcct 54 |||||||||||||||||||| Sbjct: 90241 tgatagaatcatacatgcct 90260
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cgccgtcggccgcgccgccc 357 |||||||||||||||||||| Sbjct: 1744396 cgccgtcggccgcgccgccc 1744415
>gb|AE005780.1| Caulobacter crescentus CB15 section 106 of 359 of the complete genome Length = 14131 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 tcgccgtcggccgcgccgcc 356 |||||||||||||||||||| Sbjct: 13352 tcgccgtcggccgcgccgcc 13371
>gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N1, from chromosome 17, complete sequence Length = 254336 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 agaatcatacatgcctttta 58 |||||||||||||||||||| Sbjct: 18062 agaatcatacatgcctttta 18081
>gb|AC008386.6| Homo sapiens chromosome 8 clone CTC-227M20, complete sequence Length = 121902 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 tgatagaatcatacatgcct 54 |||||||||||||||||||| Sbjct: 9932 tgatagaatcatacatgcct 9913
>emb|BX571849.18| Zebrafish DNA sequence from clone DKEY-185N1 in linkage group 2, complete sequence Length = 128844 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tttgctttgcaacacggtgc 34 |||||||||||||||||||| Sbjct: 33892 tttgctttgcaacacggtgc 33873
>gb|AC156637.2| Mus musculus BAC clone RP24-241I18 from chromosome 12, complete sequence Length = 156014 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 cataattaagcatcaggact 135 |||||||||||||||||||| Sbjct: 115193 cataattaagcatcaggact 115212
>dbj|AK043962.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830060H14 product:unclassifiable, full insert sequence Length = 1586 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 cataattaagcatcaggact 135 |||||||||||||||||||| Sbjct: 681 cataattaagcatcaggact 662
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 agctgctttgcttttttgctttgc 24 ||||||||| |||||||||||||| Sbjct: 25843385 agctgcttttcttttttgctttgc 25843362
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 335 gctcgccgtcggccgcgccgcccc 358 |||||||||||||| ||||||||| Sbjct: 3951642 gctcgccgtcggccccgccgcccc 3951665
>dbj|AP005509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1003_A09 Length = 150755 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 agctgctttgcttttttgctttgc 24 ||||||||| |||||||||||||| Sbjct: 29172 agctgcttttcttttttgctttgc 29149
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 agctgctttgcttttttgctttgc 24 ||||||||| |||||||||||||| Sbjct: 115596 agctgcttttcttttttgctttgc 115573
>gb|AE005097.1| Halobacterium sp. NRC-1 section 128 of 170 of the complete genome Length = 16069 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gctcgccgtcggccgcgccg 354 |||||||||||||||||||| Sbjct: 2522 gctcgccgtcggccgcgccg 2541
>emb|AL845312.3| Zebrafish DNA sequence from clone DKEY-287F10, complete sequence Length = 174959 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 ctgctttgcttttttgcttt 22 |||||||||||||||||||| Sbjct: 48342 ctgctttgcttttttgcttt 48361
>emb|BX072563.7| Zebrafish DNA sequence from clone CH211-277G22 in linkage group 15, complete sequence Length = 170665 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ctgctttgcttttttgcttt 22 |||||||||||||||||||| Sbjct: 78142 ctgctttgcttttttgcttt 78123
>dbj|AP005271.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-752I5, complete sequence Length = 200108 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 tgccttttattctgtctgtc 69 |||||||||||||||||||| Sbjct: 65805 tgccttttattctgtctgtc 65824
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 338 cgccgtcggccgcgccgccc 357 |||||||||||||||||||| Sbjct: 612410 cgccgtcggccgcgccgccc 612429
>emb|AJ250235.1|HSA250235 Homo sapiens FECH gene for ferrochelatase, exons 1-11 Length = 38637 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 aatcagattgatcacaacat 156 |||||||||||||||||||| Sbjct: 34515 aatcagattgatcacaacat 34496 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,012,116 Number of Sequences: 3902068 Number of extensions: 4012116 Number of successful extensions: 79234 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77960 Number of HSP's gapped (non-prelim): 1273 length of query: 549 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 526 effective length of database: 17,143,297,704 effective search space: 9017374592304 effective search space used: 9017374592304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
