Clone Name | rbasd3a04 |
---|---|
Clone Library Name | barley_pub |
>emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC 3.2.1.73) Length = 6260 Score = 398 bits (201), Expect = e-108 Identities = 201/201 (100%) Strand = Plus / Minus Query: 1 atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5818 atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 5759 Query: 61 tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5758 tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 5699 Query: 121 ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5698 ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 5639 Query: 181 caagccactactactcgcgta 201 ||||||||||||||||||||| Sbjct: 5638 caagccactactactcgcgta 5618
>emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-glucanase Length = 4849 Score = 381 bits (192), Expect = e-103 Identities = 192/192 (100%) Strand = Plus / Minus Query: 1 atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4807 atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 4748 Query: 61 tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4747 tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 4688 Query: 121 ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4687 ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 4628 Query: 181 caagccactact 192 |||||||||||| Sbjct: 4627 caagccactact 4616
>emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(EC number 3.2.1.73) Length = 4643 Score = 381 bits (192), Expect = e-103 Identities = 192/192 (100%) Strand = Plus / Minus Query: 1 atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4408 atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 4349 Query: 61 tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4348 tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 4289 Query: 121 ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4288 ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 4229 Query: 181 caagccactact 192 |||||||||||| Sbjct: 4228 caagccactact 4217
>emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA, complete CDS Length = 1426 Score = 186 bits (94), Expect = 2e-44 Identities = 140/154 (90%), Gaps = 1/154 (0%) Strand = Plus / Minus Query: 7 tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatatagttc 66 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 1395 tattattttggacaaattccgtcaaattttgacgaaattttgaaccctacaatatagttc 1336 Query: 67 ctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaagggggagcg 126 || |||||||||||| ||||||||||||| || ||||| |||||| |||||| ||||| Sbjct: 1335 -tacttacgcacacatgtgtgtacgtatcaaatgtatgatgaatcgacgaagggagagcg 1277 Query: 127 tttgcatatgcttcccttccatcgaaaatcatac 160 ||| ||| |||||||||||||||| ||||||||| Sbjct: 1276 tttacatctgcttcccttccatcgtaaatcatac 1243
>emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS Length = 1434 Score = 186 bits (94), Expect = 2e-44 Identities = 140/154 (90%), Gaps = 1/154 (0%) Strand = Plus / Minus Query: 7 tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatatagttc 66 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1381 tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatatagtt- 1323 Query: 67 ctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaagggggagcg 126 ||| |||||||||||| |||| |||||||| |||||||| |||||| |||||| ||||| Sbjct: 1322 ctacttacgcacacatgtgtgtgcgtatcaaatgcatgatgaatcgacgaagggagagcg 1263 Query: 127 tttgcatatgcttcccttccatcgaaaatcatac 160 ||| ||| ||| ||||||||||| ||||||||| Sbjct: 1262 tttacatctgccccccttccatcgtaaatcatac 1229
>gb|AF241159.1| Trypanosoma cruzi clone FGz 73 kinetoplast minicircle DNA, partial sequence Length = 322 Score = 46.1 bits (23), Expect = 0.041 Identities = 26/27 (96%) Strand = Plus / Minus Query: 29 caagttttgacgaaattttgaacccta 55 |||||||| |||||||||||||||||| Sbjct: 263 caagttttcacgaaattttgaacccta 237
>gb|AC127354.4| Mus musculus BAC clone RP23-91C8 from chromosome 6, complete sequence Length = 197318 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 aattttgaaccctacaatata 62 ||||||||||||||||||||| Sbjct: 195991 aattttgaaccctacaatata 196011
>gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosome 6, complete sequence Length = 174507 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 aattttgaaccctacaatata 62 ||||||||||||||||||||| Sbjct: 159500 aattttgaaccctacaatata 159480
>gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome 12, complete sequence Length = 190088 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 actttattattttggacaaa 22 |||||||||||||||||||| Sbjct: 57061 actttattattttggacaaa 57042
>gb|AC108477.5| Homo sapiens BAC clone RP11-499F19 from 4, complete sequence Length = 164194 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 accctacaatatagttccta 69 |||||||||||||||||||| Sbjct: 94347 accctacaatatagttccta 94366
>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the Vamp2 gene for vesicle-associated membrane 2, the Per1 gene for period homolog 1 (Drosophila), the Hes7 gene for hairy and enhancer of split 7 (Drosophila), the Aloxe3 gene for arachidonate lipoxygenase 3, the Alox12b gene for arachidonate 12-lipoxygenase 12R type, the Alox15b gene for arachidonate 15-lipoxygenase second type, the Gucy2e gene for guanylate cyclase 2e, a novel gene, the gene for LYST-interacting protein LIP8 (Lip8-pending), the gene for the likely ortholog of H. sapiens trafficking protein particle complex 1 (TRAPPC1)), the Kcnab3 gene for potassium voltage-gated channel shaker-related subfamily beta member 3, a novel gene, the 3' end of the Chd3 gene for chromodomain helicase DNA binding protein 3 and six CpG islands, complete sequence Length = 261224 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aaccctacaatatagttcct 68 |||||||||||||||||||| Sbjct: 121051 aaccctacaatatagttcct 121070
>gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, complete sequence Length = 161178 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 8 attattttggacaaatttcgtcaa 31 ||||||||||||||||||| |||| Sbjct: 22782 attattttggacaaatttcctcaa 22805
>gb|AC158635.6| Mus musculus 10 BAC RP23-396A23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183931 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ctttattattttggacaaat 23 |||||||||||||||||||| Sbjct: 86054 ctttattattttggacaaat 86035
>emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in linkage group 17, complete sequence Length = 193078 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 42 aattttgaaccctacaatatagtt 65 |||||||||||||||||| ||||| Sbjct: 114656 aattttgaaccctacaatgtagtt 114679 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,589,653 Number of Sequences: 3902068 Number of extensions: 1589653 Number of successful extensions: 101957 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101922 Number of HSP's gapped (non-prelim): 33 length of query: 201 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 179 effective length of database: 17,147,199,772 effective search space: 3069348759188 effective search space used: 3069348759188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)