ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC... 398 e-108
2emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-gluc... 381 e-103
3emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(E... 381 e-103
4emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA,... 186 2e-44
5emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS 186 2e-44
6gb|AF241159.1| Trypanosoma cruzi clone FGz 73 kinetoplast minici... 46 0.041
7gb|AC127354.4| Mus musculus BAC clone RP23-91C8 from chromosome ... 42 0.64
8gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosom... 42 0.64
9gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome... 40 2.5
10gb|AC108477.5| Homo sapiens BAC clone RP11-499F19 from 4, comple... 40 2.5
11emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chro... 40 2.5
12gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, com... 40 2.5
13gb|AC158635.6| Mus musculus 10 BAC RP23-396A23 (Roswell Park Can... 40 2.5
14emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in... 40 2.5

>emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC 3.2.1.73)
          Length = 6260

 Score =  398 bits (201), Expect = e-108
 Identities = 201/201 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5818 atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 5759

                                                                        
Query: 61   tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5758 tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 5699

                                                                        
Query: 121  ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5698 ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 5639

                                 
Query: 181  caagccactactactcgcgta 201
            |||||||||||||||||||||
Sbjct: 5638 caagccactactactcgcgta 5618



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>emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-glucanase
          Length = 4849

 Score =  381 bits (192), Expect = e-103
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4807 atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 4748

                                                                        
Query: 61   tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4747 tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 4688

                                                                        
Query: 121  ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4687 ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 4628

                        
Query: 181  caagccactact 192
            ||||||||||||
Sbjct: 4627 caagccactact 4616



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>emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(EC number 3.2.1.73)
          Length = 4643

 Score =  381 bits (192), Expect = e-103
 Identities = 192/192 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4408 atactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaata 4349

                                                                        
Query: 61   tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4348 tagttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaaggg 4289

                                                                        
Query: 121  ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4288 ggagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatag 4229

                        
Query: 181  caagccactact 192
            ||||||||||||
Sbjct: 4228 caagccactact 4217



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>emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA, complete CDS
          Length = 1426

 Score =  186 bits (94), Expect = 2e-44
 Identities = 140/154 (90%), Gaps = 1/154 (0%)
 Strand = Plus / Minus

                                                                        
Query: 7    tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatatagttc 66
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1395 tattattttggacaaattccgtcaaattttgacgaaattttgaaccctacaatatagttc 1336

                                                                        
Query: 67   ctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaagggggagcg 126
             ||  |||||||||||| ||||||||||||| || ||||| |||||| |||||| |||||
Sbjct: 1335 -tacttacgcacacatgtgtgtacgtatcaaatgtatgatgaatcgacgaagggagagcg 1277

                                              
Query: 127  tttgcatatgcttcccttccatcgaaaatcatac 160
            ||| ||| |||||||||||||||| |||||||||
Sbjct: 1276 tttacatctgcttcccttccatcgtaaatcatac 1243



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>emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS
          Length = 1434

 Score =  186 bits (94), Expect = 2e-44
 Identities = 140/154 (90%), Gaps = 1/154 (0%)
 Strand = Plus / Minus

                                                                        
Query: 7    tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatatagttc 66
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1381 tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatatagtt- 1323

                                                                        
Query: 67   ctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaagggggagcg 126
            |||  |||||||||||| |||| |||||||| |||||||| |||||| |||||| |||||
Sbjct: 1322 ctacttacgcacacatgtgtgtgcgtatcaaatgcatgatgaatcgacgaagggagagcg 1263

                                              
Query: 127  tttgcatatgcttcccttccatcgaaaatcatac 160
            ||| ||| |||  ||||||||||| |||||||||
Sbjct: 1262 tttacatctgccccccttccatcgtaaatcatac 1229



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>gb|AF241159.1| Trypanosoma cruzi clone FGz 73 kinetoplast minicircle DNA, partial
           sequence
          Length = 322

 Score = 46.1 bits (23), Expect = 0.041
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 29  caagttttgacgaaattttgaacccta 55
           |||||||| ||||||||||||||||||
Sbjct: 263 caagttttcacgaaattttgaacccta 237



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>gb|AC127354.4| Mus musculus BAC clone RP23-91C8 from chromosome 6, complete sequence
          Length = 197318

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 42     aattttgaaccctacaatata 62
              |||||||||||||||||||||
Sbjct: 195991 aattttgaaccctacaatata 196011



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>gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosome 6, complete sequence
          Length = 174507

 Score = 42.1 bits (21), Expect = 0.64
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 42     aattttgaaccctacaatata 62
              |||||||||||||||||||||
Sbjct: 159500 aattttgaaccctacaatata 159480



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>gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome 12, complete sequence
          Length = 190088

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     actttattattttggacaaa 22
             ||||||||||||||||||||
Sbjct: 57061 actttattattttggacaaa 57042



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>gb|AC108477.5| Homo sapiens BAC clone RP11-499F19 from 4, complete sequence
          Length = 164194

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    accctacaatatagttccta 69
             ||||||||||||||||||||
Sbjct: 94347 accctacaatatagttccta 94366



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>emb|AL645527.20| Mouse DNA sequence from clone RP23-26L6 on chromosome 11 Contains the
              Vamp2 gene for vesicle-associated membrane 2, the Per1 gene
              for period homolog 1 (Drosophila), the Hes7 gene for hairy
              and enhancer of split 7 (Drosophila), the Aloxe3 gene for
              arachidonate lipoxygenase 3, the Alox12b gene for
              arachidonate 12-lipoxygenase 12R type, the Alox15b gene for
              arachidonate 15-lipoxygenase second type, the Gucy2e gene
              for guanylate cyclase 2e, a novel gene, the gene for
              LYST-interacting protein LIP8 (Lip8-pending), the gene for
              the likely ortholog of H. sapiens trafficking protein
              particle complex 1 (TRAPPC1)), the Kcnab3 gene for
              potassium voltage-gated channel shaker-related subfamily
              beta member 3, a novel gene, the 3' end of the Chd3 gene
              for chromodomain helicase DNA binding protein 3 and six CpG
              islands, complete sequence
          Length = 261224

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     aaccctacaatatagttcct 68
              ||||||||||||||||||||
Sbjct: 121051 aaccctacaatatagttcct 121070



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>gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, complete sequence
          Length = 161178

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 8     attattttggacaaatttcgtcaa 31
             ||||||||||||||||||| ||||
Sbjct: 22782 attattttggacaaatttcctcaa 22805



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>gb|AC158635.6| Mus musculus 10 BAC RP23-396A23 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 183931

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     ctttattattttggacaaat 23
             ||||||||||||||||||||
Sbjct: 86054 ctttattattttggacaaat 86035



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>emb|BX005258.11| Zebrafish DNA sequence from clone DKEY-77I24 in linkage group 17,
              complete sequence
          Length = 193078

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 42     aattttgaaccctacaatatagtt 65
              |||||||||||||||||| |||||
Sbjct: 114656 aattttgaaccctacaatgtagtt 114679


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,589,653
Number of Sequences: 3902068
Number of extensions: 1589653
Number of successful extensions: 101957
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101922
Number of HSP's gapped (non-prelim): 33
length of query: 201
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 179
effective length of database: 17,147,199,772
effective search space: 3069348759188
effective search space used: 3069348759188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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