ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd3a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_476693.1| Oryza sativa (japonica cultivar-group), mRNA 248 2e-62
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 248 2e-62
3dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 248 2e-62
4dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 248 2e-62
5dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 248 2e-62
6ref|XM_550510.1| Oryza sativa (japonica cultivar-group), mRNA 242 1e-60
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
8dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 242 1e-60
9dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 1e-60
10dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 238 2e-59
11emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) 234 3e-58
12gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, comple... 200 4e-48
13gb|AF192975.1|AF192975 Oryza sativa unknown gene 190 4e-45
14gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Canc... 42 2.0
15gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D1... 42 2.0
16gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co... 40 8.0
17gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 8.0
18gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 8.0
19gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete... 40 8.0
20gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence 40 8.0
21emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chro... 40 8.0

>ref|XM_476693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1700

 Score =  248 bits (125), Expect = 2e-62
 Identities = 236/273 (86%)
 Strand = Plus / Minus

                                                                        
Query: 315  gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 374
            |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 1290 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1231

                                                                        
Query: 375  gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 434
             |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 1230 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1171

                                                                        
Query: 435  cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 494
            ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 1170 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 1111

                                                                        
Query: 495  cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 554
            |||||||||||||||||||||||||||||||| |||||||||||| || ||||  || ||
Sbjct: 1110 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 1051

                                             
Query: 555  ggctaccatctttgcaggtaggggctgtggacg 587
            |||||||||||||||||| |||||||| |||||
Sbjct: 1050 ggctaccatctttgcaggcaggggctggggacg 1018



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  248 bits (125), Expect = 2e-62
 Identities = 236/273 (86%)
 Strand = Plus / Plus

                                                                           
Query: 315     gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 374
               |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 3215904 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 3215963

                                                                           
Query: 375     gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 434
                |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 3215964 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 3216023

                                                                           
Query: 435     cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 494
               ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 3216024 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 3216083

                                                                           
Query: 495     cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 554
               |||||||||||||||||||||||||||||||| |||||||||||| || ||||  || ||
Sbjct: 3216084 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 3216143

                                                
Query: 555     ggctaccatctttgcaggtaggggctgtggacg 587
               |||||||||||||||||| |||||||| |||||
Sbjct: 3216144 ggctaccatctttgcaggcaggggctggggacg 3216176



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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score =  248 bits (125), Expect = 2e-62
 Identities = 236/273 (86%)
 Strand = Plus / Plus

                                                                          
Query: 315    gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 374
              |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 130894 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 130953

                                                                          
Query: 375    gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 434
               |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 130954 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 131013

                                                                          
Query: 435    cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 494
              ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 131014 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 131073

                                                                          
Query: 495    cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 554
              |||||||||||||||||||||||||||||||| |||||||||||| || ||||  || ||
Sbjct: 131074 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 131133

                                               
Query: 555    ggctaccatctttgcaggtaggggctgtggacg 587
              |||||||||||||||||| |||||||| |||||
Sbjct: 131134 ggctaccatctttgcaggcaggggctggggacg 131166



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>dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full
            insert sequence
          Length = 1699

 Score =  248 bits (125), Expect = 2e-62
 Identities = 236/273 (86%)
 Strand = Plus / Minus

                                                                        
Query: 315  gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 374
            |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 1289 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1230

                                                                        
Query: 375  gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 434
             |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 1229 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1170

                                                                        
Query: 435  cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 494
            ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 1169 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 1110

                                                                        
Query: 495  cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 554
            |||||||||||||||||||||||||||||||| |||||||||||| || ||||  || ||
Sbjct: 1109 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 1050

                                             
Query: 555  ggctaccatctttgcaggtaggggctgtggacg 587
            |||||||||||||||||| |||||||| |||||
Sbjct: 1049 ggctaccatctttgcaggcaggggctggggacg 1017



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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score =  248 bits (125), Expect = 2e-62
 Identities = 236/273 (86%)
 Strand = Plus / Plus

                                                                         
Query: 315   gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 374
             |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 25597 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 25656

                                                                         
Query: 375   gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 434
              |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 25657 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 25716

                                                                         
Query: 435   cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 494
             ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 25717 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 25776

                                                                         
Query: 495   cttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgat 554
             |||||||||||||||||||||||||||||||| |||||||||||| || ||||  || ||
Sbjct: 25777 cttggtgtgctcacgccacaccccgagagggatgtttgctgccattccaagcaacgcaat 25836

                                              
Query: 555   ggctaccatctttgcaggtaggggctgtggacg 587
             |||||||||||||||||| |||||||| |||||
Sbjct: 25837 ggctaccatctttgcaggcaggggctggggacg 25869



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>ref|XM_550510.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1116

 Score =  242 bits (122), Expect = 1e-60
 Identities = 233/270 (86%)
 Strand = Plus / Minus

                                                                       
Query: 318 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 377
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 957 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 898

                                                                       
Query: 378 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 437
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 897 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 838

                                                                       
Query: 438 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 497
           |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 837 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 778

                                                                       
Query: 498 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 557
           ||||||||||||||||||||| ||||||| |||||||||||| |||||||  || |||||
Sbjct: 777 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 718

                                         
Query: 558 taccatctttgcaggtaggggctgtggacg 587
           ||||||||||||||| || ||||| |||||
Sbjct: 717 taccatctttgcaggcagaggctggggacg 688



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 214  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 273
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 1058 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 999

                        
Query: 274  tctggatacatg 285
            | ||||||||||
Sbjct: 998  tttggatacatg 987



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  242 bits (122), Expect = 1e-60
 Identities = 233/270 (86%)
 Strand = Plus / Plus

                                                                          
Query: 318    ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 377
              ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 876372 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 876431

                                                                          
Query: 378    gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 437
               ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 876432 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 876491

                                                                          
Query: 438    catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 497
              |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 876492 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 876551

                                                                          
Query: 498    ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 557
              ||||||||||||||||||||| ||||||| |||||||||||| |||||||  || |||||
Sbjct: 876552 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 876611

                                            
Query: 558    taccatctttgcaggtaggggctgtggacg 587
              ||||||||||||||| || ||||| |||||
Sbjct: 876612 taccatctttgcaggcagaggctggggacg 876641



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                          
Query: 214    atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 273
              ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 876271 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 876330

                          
Query: 274    tctggatacatg 285
              | ||||||||||
Sbjct: 876331 tttggatacatg 876342



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     cttattccacttgtctcaccc 90
              |||||||||||||||||||||
Sbjct: 876066 cttattccacttgtctcaccc 876086



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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score =  242 bits (122), Expect = 1e-60
 Identities = 233/270 (86%)
 Strand = Plus / Plus

                                                                         
Query: 318   ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 377
             ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 57267 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 57326

                                                                         
Query: 378   gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 437
              ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 57327 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 57386

                                                                         
Query: 438   catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 497
             |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 57387 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 57446

                                                                         
Query: 498   ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 557
             ||||||||||||||||||||| ||||||| |||||||||||| |||||||  || |||||
Sbjct: 57447 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 57506

                                           
Query: 558   taccatctttgcaggtaggggctgtggacg 587
             ||||||||||||||| || ||||| |||||
Sbjct: 57507 taccatctttgcaggcagaggctggggacg 57536



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 214   atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 273
             ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 57166 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 57225

                         
Query: 274   tctggatacatg 285
             | ||||||||||
Sbjct: 57226 tttggatacatg 57237



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 70    cttattccacttgtctcaccc 90
             |||||||||||||||||||||
Sbjct: 56961 cttattccacttgtctcaccc 56981



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>dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full
           insert sequence
          Length = 1116

 Score =  242 bits (122), Expect = 1e-60
 Identities = 233/270 (86%)
 Strand = Plus / Minus

                                                                       
Query: 318 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 377
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 693 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 634

                                                                       
Query: 378 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 437
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 633 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 574

                                                                       
Query: 438 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 497
           |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 573 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 514

                                                                       
Query: 498 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 557
           ||||||||||||||||||||| ||||||| |||||||||||| |||||||  || |||||
Sbjct: 513 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 454

                                         
Query: 558 taccatctttgcaggtaggggctgtggacg 587
           ||||||||||||||| || ||||| |||||
Sbjct: 453 taccatctttgcaggcagaggctggggacg 424



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 214 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 273
           ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 794 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 735

                       
Query: 274 tctggatacatg 285
           | ||||||||||
Sbjct: 734 tttggatacatg 723



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 70  cttattccacttgtctcaccc 90
           |||||||||||||||||||||
Sbjct: 999 cttattccacttgtctcaccc 979



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>dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P18, full
            insert sequence
          Length = 3418

 Score =  238 bits (120), Expect = 2e-59
 Identities = 228/264 (86%)
 Strand = Plus / Minus

                                                                        
Query: 318  ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 377
            ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 3071 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 3012

                                                                        
Query: 378  gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 437
             ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 3011 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 2952

                                                                        
Query: 438  catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 497
            |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 2951 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 2892

                                                                        
Query: 498  ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 557
            ||||||||||||||||||||| ||||||| |||||||||||| |||||||  || |||||
Sbjct: 2891 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccgagcaacgcaatggc 2832

                                    
Query: 558  taccatctttgcaggtaggggctg 581
            ||||||||||||||| || |||||
Sbjct: 2831 taccatctttgcaggcagaggctg 2808



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 214  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 273
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 3172 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 3113

                        
Query: 274  tctggatacatg 285
            | ||||||||||
Sbjct: 3112 tttggatacatg 3101



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 70   cttattccacttgtctcaccc 90
            |||||||||||||||||||||
Sbjct: 3377 cttattccacttgtctcaccc 3357



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>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5)
          Length = 11618

 Score =  234 bits (118), Expect = 3e-58
 Identities = 232/270 (85%)
 Strand = Plus / Plus

                                                                        
Query: 318  ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 377
            ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 8460 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 8519

                                                                        
Query: 378  gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 437
             ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 8520 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 8579

                                                                        
Query: 438  catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 497
            |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 8580 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 8639

                                                                        
Query: 498  ggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatggc 557
            ||||||||||||||||||||| ||||||| |||||||||||| || ||||  || |||||
Sbjct: 8640 ggtgtgctcacgccacaccccaagagggatgtttgctgccattccaagcaacgcaatggc 8699

                                          
Query: 558  taccatctttgcaggtaggggctgtggacg 587
            ||||||||||||||| || ||||| |||||
Sbjct: 8700 taccatctttgcaggcagaggctggggacg 8729



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                        
Query: 214  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 273
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 8359 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 8418

                        
Query: 274  tctggatacatg 285
            | ||||||||||
Sbjct: 8419 tttggatacatg 8430



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 70   cttattccacttgtctcaccc 90
            |||||||||||||||||||||
Sbjct: 8154 cttattccacttgtctcaccc 8174



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>gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence
          Length = 1457

 Score =  200 bits (101), Expect = 4e-48
 Identities = 227/269 (84%)
 Strand = Plus / Minus

                                                                        
Query: 316  ccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccg 375
            |||||||||||  || || | |||||||||||||| ||||| ||||| || || || || 
Sbjct: 1028 ccctttgcagcctgattccttagacggatgcgctcggcccttgacccaatagtctggcca 969

                                                                        
Query: 376  aggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctc 435
            |  ||||||||||||||||||||  ||||||| || ||||||||    || |||||||||
Sbjct: 968  acaatggaggctgctatggtgaatgccatcgcagtcctgggcatcacaacagacttcctc 909

                                                                        
Query: 436  agcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttc 495
            ||||| || ||||||||||| ||||||||||| ||||| |||||||| || ||||| |||
Sbjct: 908  agcattgcaatgaacggaacagcggcatggacagctgcaaaccactgaggagagaacttc 849

                                                                        
Query: 496  ttggtgtgctcacgccacaccccgagagggacgtttgctgccatcccgagcattgcgatg 555
            ||||||||||| ||||||||||| ||||||| |||||| |||||||| || | ||| |||
Sbjct: 848  ttggtgtgctcccgccacaccccaagagggatgtttgccgccatccccagtagtgcaatg 789

                                         
Query: 556  gctaccatctttgcaggtaggggctgtgg 584
            |||||||||||||  || |||||||||||
Sbjct: 788  gctaccatctttgagggcaggggctgtgg 760



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>gb|AF192975.1|AF192975 Oryza sativa unknown gene
          Length = 673

 Score =  190 bits (96), Expect = 4e-45
 Identities = 193/224 (86%), Gaps = 1/224 (0%)
 Strand = Plus / Minus

                                                                       
Query: 318 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 377
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 239 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 180

                                                                       
Query: 378 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 437
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 179 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 120

                                                                       
Query: 438 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 497
           |||  | ||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 119 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttctt 60

                                                       
Query: 498 ggtgtgctcacgccacaccccgagagggacgtttgctgccatcc 541
           ||||||||||||||||||||| ||| ||| ||||||||||||||
Sbjct: 59  ggtgtgctcacgccacaccccaagatgga-gtttgctgccatcc 17



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 214 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgca 260
           ||||||| ||| || |||||||| ||||||||||||| ||| |||||
Sbjct: 340 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgca 294



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>gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167137

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 205    gagccaggtatcttcagcgca 225
              |||||||||||||||||||||
Sbjct: 138713 gagccaggtatcttcagcgca 138693



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>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence
          Length = 175191

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 42     ttcacagcaggacgtggtact 62
              |||||||||||||||||||||
Sbjct: 159317 ttcacagcaggacgtggtact 159337



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>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence
          Length = 150306

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     atgcatggactgacaacaca 29
              ||||||||||||||||||||
Sbjct: 115683 atgcatggactgacaacaca 115664



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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 178     gtcggtgcaggagcgccggc 197
               ||||||||||||||||||||
Sbjct: 2881007 gtcggtgcaggagcgccggc 2881026



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 435    cagcatcgcgatgaacggaa 454
              ||||||||||||||||||||
Sbjct: 159362 cagcatcgcgatgaacggaa 159343



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>gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete sequence
          Length = 52591

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 288   ggtgactgtggcggcgggaccggcggtg 315
             |||| |||||||||||||| ||||||||
Sbjct: 30448 ggtggctgtggcggcgggagcggcggtg 30475



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>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence
          Length = 317137

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    cacaaccacgacaagtttca 45
             ||||||||||||||||||||
Sbjct: 49823 cacaaccacgacaagtttca 49804



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>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete
              sequence
          Length = 201727

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 374    cgaggatggaggctgctatg 393
              ||||||||||||||||||||
Sbjct: 162615 cgaggatggaggctgctatg 162596


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,634,353
Number of Sequences: 3902068
Number of extensions: 3634353
Number of successful extensions: 63066
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62915
Number of HSP's gapped (non-prelim): 148
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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