ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2l03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RAB36_HUMAN (O95755) Ras-related protein Rab-36 30 1.9
2LRC47_HUMAN (Q8N1G4) Leucine-rich repeat-containing protein 47 28 9.4
3LRC47_MOUSE (Q505F5) Leucine-rich repeat-containing protein 47 28 9.4

>RAB36_HUMAN (O95755) Ras-related protein Rab-36|
          Length = 333

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 135 SWTLGRVGRSASRRAPTYSTLRPASRS 55
           SW LGR   S ++  PT ST+R A RS
Sbjct: 7   SWMLGRAAASPTQTPPTTSTIRVARRS 33



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>LRC47_HUMAN (Q8N1G4) Leucine-rich repeat-containing protein 47|
          Length = 583

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 298 HYLPVSGLGNLRACGP 345
           HYL VSG G+LRA GP
Sbjct: 53  HYLEVSGCGSLRAPGP 68



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>LRC47_MOUSE (Q505F5) Leucine-rich repeat-containing protein 47|
          Length = 581

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 298 HYLPVSGLGNLRACGP 345
           HYL VSG G+LRA GP
Sbjct: 55  HYLEVSGCGSLRAPGP 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,460,320
Number of Sequences: 219361
Number of extensions: 1103943
Number of successful extensions: 2597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2597
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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