ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2k24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY312461.1| Accipiter gentilis clone Age-11 microsatellite se... 42 1.6
2gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 42 1.6
3gb|AC102104.17| Mus musculus chromosome 15, clone RP23-85P16, co... 42 1.6
4gb|AC159963.7| Mus musculus chromosome 15, clone RP23-338F23, co... 42 1.6
5gb|AC100845.2| Homo sapiens chromosome 18, clone RP11-680N20, co... 42 1.6
6emb|AL772277.13| Mouse DNA sequence from clone RP23-416H4 on chr... 42 1.6
7gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
8gb|AC149232.2| Pan troglodytes BAC clone CH251-38H5 from 7, comp... 40 6.5
9gb|AC161020.2| Pan troglodytes BAC clone CH251-19C5 from chromos... 40 6.5
10gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, comp... 40 6.5
11gb|AC102639.5| Mus musculus chromosome 3, clone RP23-461I15, com... 40 6.5
12gb|AC121563.3| Mus musculus BAC clone RP23-198C23 from chromosom... 40 6.5
13gb|AC087427.3| Homo sapiens chromosome 3 clone RP11-176P14 map 3... 40 6.5
14gb|AC091685.4| Homo sapiens BAC clone RP11-165H4 from 7, complet... 40 6.5
15emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on ch... 40 6.5
16emb|AL354683.12| Human DNA sequence from clone RP11-259K11 on ch... 40 6.5
17emb|CR450833.5| Zebrafish DNA sequence from clone DKEY-31J12 in ... 40 6.5
18emb|BX927378.12| Zebrafish DNA sequence from clone CH211-116K3 i... 40 6.5
19emb|AL049378.1|HSM800163 Homo sapiens mRNA; cDNA DKFZp586I1518 (... 40 6.5
20dbj|AK124768.1| Homo sapiens cDNA FLJ42778 fis, clone BRAWH3005146 40 6.5
21dbj|AK055669.1| Homo sapiens cDNA FLJ31107 fis, clone IMR322000152 40 6.5
22gb|AC093284.3| Homo sapiens chromosome 5 clone RP11-436A5, compl... 40 6.5
23gb|AC008972.8| Homo sapiens chromosome 5 clone CTD-2376I4, compl... 40 6.5
24gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, compl... 40 6.5
25emb|AL954715.13| Zebrafish DNA sequence from clone DKEY-23I12, c... 40 6.5
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
27dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
28gb|AC087083.2|AC087083 Homo sapiens chromosome 3 clone 138a17 ma... 40 6.5
29gb|AC010907.10| Homo sapiens BAC clone RP11-568H24 from 2, compl... 40 6.5
30gb|AC150280.2| Pan troglodytes BAC clone CH251-20M5 from chromos... 40 6.5
31dbj|AB166862.1| Influenza A virus (A/chicken/Yamaguchi/7/2004(H5... 40 6.5
32gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, comp... 40 6.5
33dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
34dbj|BS000114.1| Pan troglodytes chromosome 22 clone:RP43-168A22,... 40 6.5
35dbj|BS000113.1| Pan troglodytes chromosome 22 clone:RP43-098E13,... 40 6.5
36gb|AC101935.10| Mus musculus chromosome 15, clone RP24-76H22, co... 40 6.5
37gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
38emb|BX000446.6| Zebrafish DNA sequence from clone CH211-284N24, ... 40 6.5
39gb|AC069509.16| Homo sapiens 3 BAC RP11-406M8 (Roswell Park Canc... 40 6.5 
>gb|AY312461.1| Accipiter gentilis clone Age-11 microsatellite sequence
          Length = 482

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 50  tttcttttttccatgcaccaaacac 74
           |||||||||||||||| ||||||||
Sbjct: 182 tttcttttttccatgctccaaacac 206
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 40      aaatgttgtgtttcttttttc 60
               |||||||||||||||||||||
Sbjct: 2551166 aaatgttgtgtttcttttttc 2551146
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>gb|AC102104.17| Mus musculus chromosome 15, clone RP23-85P16, complete sequence
          Length = 180310

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    ttttccaaacccaataaaaca 140
              |||||||||||||||||||||
Sbjct: 105390 ttttccaaacccaataaaaca 105370
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>gb|AC159963.7| Mus musculus chromosome 15, clone RP23-338F23, complete sequence
          Length = 228337

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 120    ttttccaaacccaataaaaca 140
              |||||||||||||||||||||
Sbjct: 198962 ttttccaaacccaataaaaca 198982
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>gb|AC100845.2| Homo sapiens chromosome 18, clone RP11-680N20, complete sequence
          Length = 174328

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 429   tttcttttcccagtttttcctttta 453
             |||||||| ||||||||||||||||
Sbjct: 72114 tttctttttccagtttttcctttta 72138
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>emb|AL772277.13| Mouse DNA sequence from clone RP23-416H4 on chromosome 4, complete
             sequence
          Length = 167123

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 405   aaaccaggttaaaacaatgtt 425
             |||||||||||||||||||||
Sbjct: 66821 aaaccaggttaaaacaatgtt 66801
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>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    aatgttgtgtttcttttttc 60
             ||||||||||||||||||||
Sbjct: 22482 aatgttgtgtttcttttttc 22501
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>gb|AC149232.2| Pan troglodytes BAC clone CH251-38H5 from 7, complete sequence
          Length = 184062

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 433   ttttcccagtttttccttttattg 456
             ||||||||||||||| ||||||||
Sbjct: 79298 ttttcccagtttttcattttattg 79275
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>gb|AC161020.2| Pan troglodytes BAC clone CH251-19C5 from chromosome 7, complete sequence
          Length = 200756

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 433    ttttcccagtttttccttttattg 456
              ||||||||||||||| ||||||||
Sbjct: 124824 ttttcccagtttttcattttattg 124801
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>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence
          Length = 196843

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 423   gtttactttcttttcccagtttttcctt 450
             |||||||||||| |||| ||||||||||
Sbjct: 54205 gtttactttcttatccctgtttttcctt 54178
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>gb|AC102639.5| Mus musculus chromosome 3, clone RP23-461I15, complete sequence
          Length = 199243

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     tgttgtgtttcttttttcca 62
              ||||||||||||||||||||
Sbjct: 190877 tgttgtgtttcttttttcca 190896
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>gb|AC121563.3| Mus musculus BAC clone RP23-198C23 from chromosome 3, complete sequence
          Length = 208350

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    tgttgtgtttcttttttcca 62
             ||||||||||||||||||||
Sbjct: 96363 tgttgtgtttcttttttcca 96344
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>gb|AC087427.3| Homo sapiens chromosome 3 clone RP11-176P14 map 3p, complete sequence
          Length = 171965

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 440    agtttttccttttattgcat 459
              ||||||||||||||||||||
Sbjct: 118046 agtttttccttttattgcat 118065
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>gb|AC091685.4| Homo sapiens BAC clone RP11-165H4 from 7, complete sequence
          Length = 68299

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 433   ttttcccagtttttccttttattg 456
             ||||||||||||||| ||||||||
Sbjct: 55550 ttttcccagtttttcattttattg 55573
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>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains
             part of the PARD3 gene for par-3 partitioning defective 3
             homolog (C.elegans), complete sequence
          Length = 193131

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 423   gtttactttcttttcccagtttttcctt 450
             |||||||||||| |||| ||||||||||
Sbjct: 52408 gtttactttcttatccctgtttttcctt 52381
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>emb|AL354683.12| Human DNA sequence from clone RP11-259K11 on chromosome 20, complete
            sequence
          Length = 11882

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  atatcttttccaaacccaat 134
            ||||||||||||||||||||
Sbjct: 2305 atatcttttccaaacccaat 2324
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>emb|CR450833.5| Zebrafish DNA sequence from clone DKEY-31J12 in linkage group 8,
             complete sequence
          Length = 213777

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   aaacccaataaaacaactgt 145
             ||||||||||||||||||||
Sbjct: 61213 aaacccaataaaacaactgt 61194
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>emb|BX927378.12| Zebrafish DNA sequence from clone CH211-116K3 in linkage group 5,
             complete sequence
          Length = 123661

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    gttgtgtttcttttttccat 63
             ||||||||||||||||||||
Sbjct: 69630 gttgtgtttcttttttccat 69649
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>emb|AL049378.1|HSM800163 Homo sapiens mRNA; cDNA DKFZp586I1518 (from clone DKFZp586I1518)
          Length = 1769

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 439 cagtttttccttttattgca 458
           ||||||||||||||||||||
Sbjct: 266 cagtttttccttttattgca 285
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>dbj|AK124768.1| Homo sapiens cDNA FLJ42778 fis, clone BRAWH3005146
          Length = 4794

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  cagtttttccttttattgca 458
            ||||||||||||||||||||
Sbjct: 3984 cagtttttccttttattgca 4003
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>dbj|AK055669.1| Homo sapiens cDNA FLJ31107 fis, clone IMR322000152
          Length = 2250

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 439  cagtttttccttttattgca 458
            ||||||||||||||||||||
Sbjct: 1440 cagtttttccttttattgca 1459
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>gb|AC093284.3| Homo sapiens chromosome 5 clone RP11-436A5, complete sequence
          Length = 91874

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   ttcccagtttttccttttat 454
             ||||||||||||||||||||
Sbjct: 33210 ttcccagtttttccttttat 33191
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>gb|AC008972.8| Homo sapiens chromosome 5 clone CTD-2376I4, complete sequence
          Length = 98842

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   cagtttttccttttattgca 458
             ||||||||||||||||||||
Sbjct: 82916 cagtttttccttttattgca 82897
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>gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, complete sequence
          Length = 182564

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 435   ttcccagtttttccttttat 454
             ||||||||||||||||||||
Sbjct: 22719 ttcccagtttttccttttat 22738
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>emb|AL954715.13| Zebrafish DNA sequence from clone DKEY-23I12, complete sequence
          Length = 195884

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   cttttcccagtttttccttt 451
             ||||||||||||||||||||
Sbjct: 48121 cttttcccagtttttccttt 48102
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 41      aatgttgtgtttcttttttc 60
               ||||||||||||||||||||
Sbjct: 3428527 aatgttgtgtttcttttttc 3428546
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 428      ctttcttttcccagtttttccttttatt 455
                |||||||||| | |||||||||||||||
Sbjct: 13718618 ctttcttttcgccgtttttccttttatt 13718591
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>gb|AC087083.2|AC087083 Homo sapiens chromosome 3 clone 138a17 map 3p, complete sequence
          Length = 176368

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 440   agtttttccttttattgcat 459
             ||||||||||||||||||||
Sbjct: 24977 agtttttccttttattgcat 24996
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>gb|AC010907.10| Homo sapiens BAC clone RP11-568H24 from 2, complete sequence
          Length = 139357

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 429   tttcttttcccagtttttcc 448
             ||||||||||||||||||||
Sbjct: 50820 tttcttttcccagtttttcc 50839
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>gb|AC150280.2| Pan troglodytes BAC clone CH251-20M5 from chromosome 7, complete sequence
          Length = 191966

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 433    ttttcccagtttttccttttattg 456
              ||||||||||||||| ||||||||
Sbjct: 136631 ttttcccagtttttcattttattg 136608
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>dbj|AB166862.1| Influenza A virus (A/chicken/Yamaguchi/7/2004(H5N1)) HA gene for
           hemagglutinin, complete cds
          Length = 1704

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 99  atgtcccaacggaaatatat 118
           ||||||||||||||||||||
Sbjct: 655 atgtcccaacggaaatatat 636
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>gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, complete sequence
          Length = 186972

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 435   ttcccagtttttccttttat 454
             ||||||||||||||||||||
Sbjct: 55846 ttcccagtttttccttttat 55827
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>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1040D06
          Length = 155034

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 428    ctttcttttcccagtttttccttttatt 455
              |||||||||| | |||||||||||||||
Sbjct: 116732 ctttcttttcgccgtttttccttttatt 116705
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>dbj|BS000114.1| Pan troglodytes chromosome 22 clone:RP43-168A22, map 22, complete
             sequences
          Length = 173403

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 33    aaatngaaaatgttgtgtttctttttt 59
             |||| ||||||||||||||| ||||||
Sbjct: 15557 aaatagaaaatgttgtgtttgtttttt 15531
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>dbj|BS000113.1| Pan troglodytes chromosome 22 clone:RP43-098E13, map 22, complete
              sequences
          Length = 172432

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 33     aaatngaaaatgttgtgtttctttttt 59
              |||| ||||||||||||||| ||||||
Sbjct: 145697 aaatagaaaatgttgtgtttgtttttt 145671
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>gb|AC101935.10| Mus musculus chromosome 15, clone RP24-76H22, complete sequence
          Length = 216277

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 38     gaaaatgttgtgtttcttttttcc 61
              ||||||||||| ||||||||||||
Sbjct: 155370 gaaaatgttgtttttcttttttcc 155393
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 41      aatgttgtgtttcttttttc 60
               ||||||||||||||||||||
Sbjct: 3437231 aatgttgtgtttcttttttc 3437250
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>emb|BX000446.6| Zebrafish DNA sequence from clone CH211-284N24, complete sequence
          Length = 160002

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 432   cttttcccagtttttccttt 451
             ||||||||||||||||||||
Sbjct: 40071 cttttcccagtttttccttt 40052
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>gb|AC069509.16| Homo sapiens 3 BAC RP11-406M8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152832

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 442   tttttccttttattgcattnaaa 464
             ||||||||||||||||||| |||
Sbjct: 47454 tttttccttttattgcattgaaa 47432


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,013,524
Number of Sequences: 3902068
Number of extensions: 4013524
Number of successful extensions: 87691
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87513
Number of HSP's gapped (non-prelim): 178
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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