Clone Name | rbasd2k24 |
---|---|
Clone Library Name | barley_pub |
>gb|AY312461.1| Accipiter gentilis clone Age-11 microsatellite sequence Length = 482 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 50 tttcttttttccatgcaccaaacac 74 |||||||||||||||| |||||||| Sbjct: 182 tttcttttttccatgctccaaacac 206
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 aaatgttgtgtttcttttttc 60 ||||||||||||||||||||| Sbjct: 2551166 aaatgttgtgtttcttttttc 2551146
>gb|AC102104.17| Mus musculus chromosome 15, clone RP23-85P16, complete sequence Length = 180310 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 ttttccaaacccaataaaaca 140 ||||||||||||||||||||| Sbjct: 105390 ttttccaaacccaataaaaca 105370
>gb|AC159963.7| Mus musculus chromosome 15, clone RP23-338F23, complete sequence Length = 228337 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 ttttccaaacccaataaaaca 140 ||||||||||||||||||||| Sbjct: 198962 ttttccaaacccaataaaaca 198982
>gb|AC100845.2| Homo sapiens chromosome 18, clone RP11-680N20, complete sequence Length = 174328 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 429 tttcttttcccagtttttcctttta 453 |||||||| |||||||||||||||| Sbjct: 72114 tttctttttccagtttttcctttta 72138
>emb|AL772277.13| Mouse DNA sequence from clone RP23-416H4 on chromosome 4, complete sequence Length = 167123 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 aaaccaggttaaaacaatgtt 425 ||||||||||||||||||||| Sbjct: 66821 aaaccaggttaaaacaatgtt 66801
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aatgttgtgtttcttttttc 60 |||||||||||||||||||| Sbjct: 22482 aatgttgtgtttcttttttc 22501
>gb|AC149232.2| Pan troglodytes BAC clone CH251-38H5 from 7, complete sequence Length = 184062 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 ttttcccagtttttccttttattg 456 ||||||||||||||| |||||||| Sbjct: 79298 ttttcccagtttttcattttattg 79275
>gb|AC161020.2| Pan troglodytes BAC clone CH251-19C5 from chromosome 7, complete sequence Length = 200756 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 ttttcccagtttttccttttattg 456 ||||||||||||||| |||||||| Sbjct: 124824 ttttcccagtttttcattttattg 124801
>gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence Length = 196843 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 423 gtttactttcttttcccagtttttcctt 450 |||||||||||| |||| |||||||||| Sbjct: 54205 gtttactttcttatccctgtttttcctt 54178
>gb|AC102639.5| Mus musculus chromosome 3, clone RP23-461I15, complete sequence Length = 199243 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tgttgtgtttcttttttcca 62 |||||||||||||||||||| Sbjct: 190877 tgttgtgtttcttttttcca 190896
>gb|AC121563.3| Mus musculus BAC clone RP23-198C23 from chromosome 3, complete sequence Length = 208350 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tgttgtgtttcttttttcca 62 |||||||||||||||||||| Sbjct: 96363 tgttgtgtttcttttttcca 96344
>gb|AC087427.3| Homo sapiens chromosome 3 clone RP11-176P14 map 3p, complete sequence Length = 171965 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agtttttccttttattgcat 459 |||||||||||||||||||| Sbjct: 118046 agtttttccttttattgcat 118065
>gb|AC091685.4| Homo sapiens BAC clone RP11-165H4 from 7, complete sequence Length = 68299 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 433 ttttcccagtttttccttttattg 456 ||||||||||||||| |||||||| Sbjct: 55550 ttttcccagtttttcattttattg 55573
>emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains part of the PARD3 gene for par-3 partitioning defective 3 homolog (C.elegans), complete sequence Length = 193131 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 423 gtttactttcttttcccagtttttcctt 450 |||||||||||| |||| |||||||||| Sbjct: 52408 gtttactttcttatccctgtttttcctt 52381
>emb|AL354683.12| Human DNA sequence from clone RP11-259K11 on chromosome 20, complete sequence Length = 11882 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 atatcttttccaaacccaat 134 |||||||||||||||||||| Sbjct: 2305 atatcttttccaaacccaat 2324
>emb|CR450833.5| Zebrafish DNA sequence from clone DKEY-31J12 in linkage group 8, complete sequence Length = 213777 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 aaacccaataaaacaactgt 145 |||||||||||||||||||| Sbjct: 61213 aaacccaataaaacaactgt 61194
>emb|BX927378.12| Zebrafish DNA sequence from clone CH211-116K3 in linkage group 5, complete sequence Length = 123661 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 gttgtgtttcttttttccat 63 |||||||||||||||||||| Sbjct: 69630 gttgtgtttcttttttccat 69649
>emb|AL049378.1|HSM800163 Homo sapiens mRNA; cDNA DKFZp586I1518 (from clone DKFZp586I1518) Length = 1769 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 cagtttttccttttattgca 458 |||||||||||||||||||| Sbjct: 266 cagtttttccttttattgca 285
>dbj|AK124768.1| Homo sapiens cDNA FLJ42778 fis, clone BRAWH3005146 Length = 4794 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 cagtttttccttttattgca 458 |||||||||||||||||||| Sbjct: 3984 cagtttttccttttattgca 4003
>dbj|AK055669.1| Homo sapiens cDNA FLJ31107 fis, clone IMR322000152 Length = 2250 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 cagtttttccttttattgca 458 |||||||||||||||||||| Sbjct: 1440 cagtttttccttttattgca 1459
>gb|AC093284.3| Homo sapiens chromosome 5 clone RP11-436A5, complete sequence Length = 91874 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 ttcccagtttttccttttat 454 |||||||||||||||||||| Sbjct: 33210 ttcccagtttttccttttat 33191
>gb|AC008972.8| Homo sapiens chromosome 5 clone CTD-2376I4, complete sequence Length = 98842 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 439 cagtttttccttttattgca 458 |||||||||||||||||||| Sbjct: 82916 cagtttttccttttattgca 82897
>gb|AC093532.2| Homo sapiens chromosome 5 clone RP11-407N4, complete sequence Length = 182564 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 ttcccagtttttccttttat 454 |||||||||||||||||||| Sbjct: 22719 ttcccagtttttccttttat 22738
>emb|AL954715.13| Zebrafish DNA sequence from clone DKEY-23I12, complete sequence Length = 195884 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 cttttcccagtttttccttt 451 |||||||||||||||||||| Sbjct: 48121 cttttcccagtttttccttt 48102
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aatgttgtgtttcttttttc 60 |||||||||||||||||||| Sbjct: 3428527 aatgttgtgtttcttttttc 3428546
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 428 ctttcttttcccagtttttccttttatt 455 |||||||||| | ||||||||||||||| Sbjct: 13718618 ctttcttttcgccgtttttccttttatt 13718591
>gb|AC087083.2|AC087083 Homo sapiens chromosome 3 clone 138a17 map 3p, complete sequence Length = 176368 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agtttttccttttattgcat 459 |||||||||||||||||||| Sbjct: 24977 agtttttccttttattgcat 24996
>gb|AC010907.10| Homo sapiens BAC clone RP11-568H24 from 2, complete sequence Length = 139357 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 429 tttcttttcccagtttttcc 448 |||||||||||||||||||| Sbjct: 50820 tttcttttcccagtttttcc 50839
>gb|AC150280.2| Pan troglodytes BAC clone CH251-20M5 from chromosome 7, complete sequence Length = 191966 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 ttttcccagtttttccttttattg 456 ||||||||||||||| |||||||| Sbjct: 136631 ttttcccagtttttcattttattg 136608
>dbj|AB166862.1| Influenza A virus (A/chicken/Yamaguchi/7/2004(H5N1)) HA gene for hemagglutinin, complete cds Length = 1704 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 atgtcccaacggaaatatat 118 |||||||||||||||||||| Sbjct: 655 atgtcccaacggaaatatat 636
>gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, complete sequence Length = 186972 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 ttcccagtttttccttttat 454 |||||||||||||||||||| Sbjct: 55846 ttcccagtttttccttttat 55827
>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1040D06 Length = 155034 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 428 ctttcttttcccagtttttccttttatt 455 |||||||||| | ||||||||||||||| Sbjct: 116732 ctttcttttcgccgtttttccttttatt 116705
>dbj|BS000114.1| Pan troglodytes chromosome 22 clone:RP43-168A22, map 22, complete sequences Length = 173403 Score = 40.1 bits (20), Expect = 6.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 33 aaatngaaaatgttgtgtttctttttt 59 |||| ||||||||||||||| |||||| Sbjct: 15557 aaatagaaaatgttgtgtttgtttttt 15531
>dbj|BS000113.1| Pan troglodytes chromosome 22 clone:RP43-098E13, map 22, complete sequences Length = 172432 Score = 40.1 bits (20), Expect = 6.5 Identities = 25/27 (92%) Strand = Plus / Minus Query: 33 aaatngaaaatgttgtgtttctttttt 59 |||| ||||||||||||||| |||||| Sbjct: 145697 aaatagaaaatgttgtgtttgtttttt 145671
>gb|AC101935.10| Mus musculus chromosome 15, clone RP24-76H22, complete sequence Length = 216277 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 gaaaatgttgtgtttcttttttcc 61 ||||||||||| |||||||||||| Sbjct: 155370 gaaaatgttgtttttcttttttcc 155393
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 aatgttgtgtttcttttttc 60 |||||||||||||||||||| Sbjct: 3437231 aatgttgtgtttcttttttc 3437250
>emb|BX000446.6| Zebrafish DNA sequence from clone CH211-284N24, complete sequence Length = 160002 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 cttttcccagtttttccttt 451 |||||||||||||||||||| Sbjct: 40071 cttttcccagtttttccttt 40052
>gb|AC069509.16| Homo sapiens 3 BAC RP11-406M8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152832 Score = 40.1 bits (20), Expect = 6.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 442 tttttccttttattgcattnaaa 464 ||||||||||||||||||| ||| Sbjct: 47454 tttttccttttattgcattgaaa 47432 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,013,524 Number of Sequences: 3902068 Number of extensions: 4013524 Number of successful extensions: 87691 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87513 Number of HSP's gapped (non-prelim): 178 length of query: 481 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 459 effective length of database: 17,147,199,772 effective search space: 7870564695348 effective search space used: 7870564695348 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)