ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2k18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HCYB_SCUCO (Q8IFJ8) Hemocyanin subunit B precursor 33 0.45
2SYC_SULSO (Q97WE6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst... 31 1.7
3TCPE_SCHPO (Q9UTM4) T-complex protein 1 subunit epsilon (TCP-1-e... 30 2.9
4OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid) 29 5.0
5ORN_TROW8 (Q83HW9) Oligoribonuclease (EC 3.1.-.-) 28 8.6
6GA2L1_HUMAN (Q99501) GAS2-like protein 1 (Growth arrest-specific... 28 8.6

>HCYB_SCUCO (Q8IFJ8) Hemocyanin subunit B precursor|
          Length = 659

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
 Frame = +2

Query: 2   EYVRHRYMVCIYTQPHSGGRVHQDITSVFQIPVVQSSSESRF------QELYNEVEDGQE 163
           E VRHR    ++    S   VH+D T    +P +      +F       E+ N +  GQE
Sbjct: 106 EIVRHRINEDMFYYAFSVAAVHRDDTRGINLPRIHEIYPDKFLKHKVIVEVKNSINSGQE 165

Query: 164 EP--NLNHVLVQIIRPRKELRGISQGVRIN 247
           +P  +  H    +  P  +L    + V +N
Sbjct: 166 DPLIDATHEFTDLRDPNSKLHYFLEDVGLN 195



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>SYC_SULSO (Q97WE6) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 470

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = -1

Query: 370 PLAQAYFWFSRRVYSTVEAGKDTIEAAKGVASRLNKDDNLEVYPDPLGDPTKFFTRPDDL 191
           P    Y++ +    S ++  ++ +E AK    R+   D++ +  D + +  KF+ + DD+
Sbjct: 286 PSVLRYWYLTSHYRSPIDFSEEALEQAKSALQRIK--DSMAIIRDVISEGPKFYVKDDDI 343



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>TCPE_SCHPO (Q9UTM4) T-complex protein 1 subunit epsilon (TCP-1-epsilon)|
           (CCT-epsilon)
          Length = 546

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
 Frame = +2

Query: 23  MVCIYTQPHSGGRVHQDITSVFQIPVVQSSSESRFQELYNEVEDGQE---------EPNL 175
           + C +  P    +   DITSV +   +Q+  + +FQE+   V+D            +   
Sbjct: 253 LTCPFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKHVKDAGANLVICQWGFDDEA 312

Query: 176 NHVLVQ 193
           NH+L+Q
Sbjct: 313 NHLLLQ 318



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>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 154 RPGRAQSEPRPGSDHPAS*RTSWDLPGGQDKPPDCRPCSAG 276
           RP    S P PGS HP    +   +P  Q +PP     SAG
Sbjct: 409 RPWPGGSSPSPGSGHPLPPASPHHVPPLQQQPPPPPHVSAG 449



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>ORN_TROW8 (Q83HW9) Oligoribonuclease (EC 3.1.-.-)|
          Length = 184

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 188 VQIIRPRKELRGISQGVRINLQIVVLVQPGCHALGGLDRVLAGLHR 325
           V +I   K+L  + +GV       V+V P   ALG +D  +A +HR
Sbjct: 30  VAVIVTDKDLLPLDEGVN------VVVSPSSEALGAMDNYVARMHR 69



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>GA2L1_HUMAN (Q99501) GAS2-like protein 1 (Growth arrest-specific 2-like 1)|
           (GAS2-related protein on chromosome 22) (GAR22 protein)
          Length = 681

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 275 PAEQGRQSGGLS*PPGRSHEVLYEAG*SEPGRGSDWALPGRPLLHCTVP 129
           P + GR + GL  P  ++     + G   PG G     PG PL  CT P
Sbjct: 580 PGDSGRTANGLPGPRSQALSSSSDEGSPCPGMGGPLDAPGSPLA-CTEP 627


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,851,698
Number of Sequences: 219361
Number of extensions: 1239400
Number of successful extensions: 4642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4641
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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