ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2k16 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC_STRT2 (Q5M2F6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 32.0 bits (71), Expect = 1.7 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = -1 Query: 601 DDWGGARAQEGFED---RVLSRNKTRHGRCRCCYG-GIITSEHAEIGK 470 +D A G E+ R + KTRHG CR CYG + T + E+G+ Sbjct: 871 EDMAAAIVNAGVEEVTIRSVFTCKTRHGVCRHCYGINLATGDAVEVGE 918
>RPOC_STRT1 (Q5LXV4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 32.0 bits (71), Expect = 1.7 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Frame = -1 Query: 601 DDWGGARAQEGFED---RVLSRNKTRHGRCRCCYG-GIITSEHAEIGK 470 +D A G E+ R + KTRHG CR CYG + T + E+G+ Sbjct: 871 EDMAAAIVNAGVEEVTIRSVFTCKTRHGVCRHCYGINLATGDAVEVGE 918
>GLYA_BACSK (Q5WB66) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 417 Score = 30.0 bits (66), Expect = 6.5 Identities = 16/60 (26%), Positives = 30/60 (50%) Frame = +2 Query: 113 YININKLKPQ*PQSSTLVKLYTLFKTGNTYSHTRFSNSIHQISHGDPPNFGGVMRLFVSH 292 Y+N+ +P + + +T+ + G+T S+ H ++HG P NF G+ FV + Sbjct: 86 YVNV---QPHSGAQANMGVYFTILEHGDTVLGMNLSHGGH-LTHGSPVNFSGIQYRFVEY 141
>GLYA_BACSU (P39148) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 415 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +2 Query: 131 LKPQ*PQSSTLVKLYTLFKTGNTYSHTRFSNSIHQISHGDPPNFGGVMRLFVSH 292 ++P + + +T+ + G+T S+ H ++HG P NF GV FV + Sbjct: 89 VQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGH-LTHGSPVNFSGVQYNFVEY 141
>GLYA_BACHK (Q6HAW9) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 414 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +2 Query: 131 LKPQ*PQSSTLVKLYTLFKTGNTYSHTRFSNSIHQISHGDPPNFGGVMRLFVSH 292 ++P + + +T+ + G+T S+ H ++HG P NF GV FV + Sbjct: 90 VQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGH-LTHGSPVNFSGVQYNFVEY 142
>GLYA_BACCZ (Q630T3) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 414 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +2 Query: 131 LKPQ*PQSSTLVKLYTLFKTGNTYSHTRFSNSIHQISHGDPPNFGGVMRLFVSH 292 ++P + + +T+ + G+T S+ H ++HG P NF GV FV + Sbjct: 90 VQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGH-LTHGSPVNFSGVQYNFVEY 142
>GLYA_BACCR (Q814V2) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 414 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +2 Query: 131 LKPQ*PQSSTLVKLYTLFKTGNTYSHTRFSNSIHQISHGDPPNFGGVMRLFVSH 292 ++P + + +T+ + G+T S+ H ++HG P NF GV FV + Sbjct: 90 VQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGH-LTHGSPVNFSGVQYNFVEY 142
>GLYA_LISMO (Q8Y4B2) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 413 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +2 Query: 131 LKPQ*PQSSTLVKLYTLFKTGNTYSHTRFSNSIHQISHGDPPNFGGVMRLFVSH 292 ++P + + +T+ + G+T S+ H ++HG P NF GV+ FV + Sbjct: 89 VQPHSGAQANMAVYHTVLEPGDTVLGMNLSHGGH-LTHGSPVNFSGVLYNFVEY 141
>GLYA_LISMF (Q71WN9) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 413 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +2 Query: 131 LKPQ*PQSSTLVKLYTLFKTGNTYSHTRFSNSIHQISHGDPPNFGGVMRLFVSH 292 ++P + + +T+ + G+T S+ H ++HG P NF GV+ FV + Sbjct: 89 VQPHSGAQANMAVYHTVLEPGDTVLGMNLSHGGH-LTHGSPVNFSGVLYNFVEY 141
>GLYA_LISIN (Q927V4) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 413 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/54 (27%), Positives = 28/54 (51%) Frame = +2 Query: 131 LKPQ*PQSSTLVKLYTLFKTGNTYSHTRFSNSIHQISHGDPPNFGGVMRLFVSH 292 ++P + + +T+ + G+T S+ H ++HG P NF GV+ FV + Sbjct: 89 VQPHSGAQANMAVYHTVLEPGDTVLGMNLSHGGH-LTHGSPVNFSGVLYNFVEY 141
>GLYA_BACC1 (Q72XD7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 413 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +2 Query: 131 LKPQ*PQSSTLVKLYTLFKTGNTYSHTRFSNSIHQISHGDPPNFGGVMRLFVSH 292 ++P + + +T+ + G+T S+ H ++HG P NF GV FV + Sbjct: 89 VQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGH-LTHGSPVNFSGVQYNFVEY 141
>GLYA_BACAN (Q81JY4) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 413 Score = 30.0 bits (66), Expect = 6.5 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +2 Query: 131 LKPQ*PQSSTLVKLYTLFKTGNTYSHTRFSNSIHQISHGDPPNFGGVMRLFVSH 292 ++P + + +T+ + G+T S+ H ++HG P NF GV FV + Sbjct: 89 VQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGH-LTHGSPVNFSGVQYNFVEY 141
>Y410_LISIN (Q7AP31) UPF0365 protein lin0410| Length = 314 Score = 30.0 bits (66), Expect = 6.5 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Frame = -2 Query: 600 TIGVVQEHRKGLKTESCQGIK---QGMGDADVVTEESSPVSTLKLGNAGSSPAEFDHLNI 430 T+G +EH L+ + K QG+GD T S ++ +++G+ + + + N Sbjct: 181 TVGETREHTDVLENPNSISKKVQEQGLGDGTAYTILSIDIAEMRIGDNIKAKLDIEKANA 240 Query: 429 VQQRADALESLLEICAKLLEQE 364 + A A S + A LEQE Sbjct: 241 DMEVAQAAASKRKAEAIALEQE 262
>Y404_LISMF (Q723S2) UPF0365 protein LMOf2365_0404| Length = 314 Score = 30.0 bits (66), Expect = 6.5 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Frame = -2 Query: 600 TIGVVQEHRKGLKTESCQGIK---QGMGDADVVTEESSPVSTLKLGNAGSSPAEFDHLNI 430 T+G +EH L+ + K QG+GD T S ++ +++G+ + + + N Sbjct: 181 TVGETREHTDVLENPNSISKKVQEQGLGDGTAYTILSIDIAEMRIGDNIKAKLDIEKANA 240 Query: 429 VQQRADALESLLEICAKLLEQE 364 + A A S + A LEQE Sbjct: 241 DMEVAQAAASKRKAEAIALEQE 262
>Y392_LISMO (Q92EP8) UPF0365 protein lmo0392| Length = 314 Score = 30.0 bits (66), Expect = 6.5 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Frame = -2 Query: 600 TIGVVQEHRKGLKTESCQGIK---QGMGDADVVTEESSPVSTLKLGNAGSSPAEFDHLNI 430 T+G +EH L+ + K QG+GD T S ++ +++G+ + + + N Sbjct: 181 TVGETREHTDVLENPNSISKKVQEQGLGDGTAYTILSIDIAEMRIGDNIKAKLDIEKANA 240 Query: 429 VQQRADALESLLEICAKLLEQE 364 + A A S + A LEQE Sbjct: 241 DMEVAQAAASKRKAEAIALEQE 262
>BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein homolog| Length = 1849 Score = 29.6 bits (65), Expect = 8.5 Identities = 22/81 (27%), Positives = 38/81 (46%) Frame = -2 Query: 585 QEHRKGLKTESCQGIKQGMGDADVVTEESSPVSTLKLGNAGSSPAEFDHLNIVQQRADAL 406 +E GL+ +SCQ ++ D+D+ S VS L G + + QQR Sbjct: 1339 EERETGLEEDSCQ--EEQSVDSDLGEAVSDHVSETSLSEDGVGLSSQSDILTTQQRDTMQ 1396 Query: 405 ESLLEICAKLLEQERLDELAG 343 ++LL++ ++ E E + E G Sbjct: 1397 DNLLKLQQEMAELEAVLERHG 1417
>SMG7_MOUSE (Q5RJH6) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)| Length = 1138 Score = 29.6 bits (65), Expect = 8.5 Identities = 11/42 (26%), Positives = 25/42 (59%) Frame = +1 Query: 178 TLQNREHLLTHKILKFYPPDQSWGPSQLWWSHETFRQPYRRL 303 +LQ+ ++L ++LK D GP+++W S + + Y+++ Sbjct: 2 SLQSAQYLRQAEVLKAEMTDSKLGPAEVWTSRQALQDLYQKM 43 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,708,795 Number of Sequences: 219361 Number of extensions: 2010136 Number of successful extensions: 5430 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5232 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5429 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
