ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2k15 |
|---|---|
| Clone Library Name | barley_pub |
>PLZ12_LUPPO (P16148) Protein PPLZ12| Length = 184 Score = 128 bits (321), Expect = 1e-29 Identities = 59/94 (62%), Positives = 78/94 (82%) Frame = -2 Query: 538 EAKYLSGLGIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLITQYFDTMKEIGASS 359 EAKYL G+G+ARQRQAI DGLR+++L F+ V GT+AK+VMD+++ITQYFDT+K++G SS Sbjct: 83 EAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSS 142 Query: 358 KSSAVFIPHGPGAVRDIATQIRDGLLQGQSASDN 257 K++ VFIPHGPG VRDI QIR+GL++ A N Sbjct: 143 KNTTVFIPHGPGHVRDIGEQIRNGLMESARAGIN 176
>INT2_SALTI (P62592) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 2.5 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Frame = -1 Query: 479 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 321 PE P LR Q AW +GR G + R Y R G PW W Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232 Query: 320 SARHRH-TDPR 291 A+H H TDPR Sbjct: 233 FAQHTHSTDPR 243
>INT2_PSEAE (P62591) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 2.5 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Frame = -1 Query: 479 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 321 PE P LR Q AW +GR G + R Y R G PW W Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232 Query: 320 SARHRH-TDPR 291 A+H H TDPR Sbjct: 233 FAQHTHSTDPR 243
>INT2_ECOLI (P62590) Integrase/recombinase (E2 protein)| Length = 337 Score = 30.8 bits (68), Expect = 2.5 Identities = 25/71 (35%), Positives = 28/71 (39%), Gaps = 8/71 (11%) Frame = -1 Query: 479 PEGQRPGLRSQC----AW---HHCKGRDGHGADHPILRYYERDRRVLQVLGGVHPPWPWR 321 PE P LR Q AW +GR G + R Y R G PW W Sbjct: 181 PESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPR--------AGHSWPWFWV 232 Query: 320 SARHRH-TDPR 291 A+H H TDPR Sbjct: 233 FAQHTHSTDPR 243
>DHSO_BACHD (Q9Z9U1) Sorbitol dehydrogenase (EC 1.1.1.14) (L-iditol| 2-dehydrogenase) (Glucitol dehydrogenase) Length = 343 Score = 30.4 bits (67), Expect = 3.3 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Frame = +2 Query: 266 GRLALKKTVADLCGDVAHCARAMGD----EHRRGLGGRADLFHSIEVLGDQHHVHHV 424 G +T +CG ++C GD HR+GLG + D + V+ Q +HH+ Sbjct: 79 GDRVTSETTYSICGKCSYCTS--GDYNLCSHRKGLGNQQDGSFAKYVIARQESLHHL 133
>APAH_BORPE (Q7W041) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 277 Score = 30.0 bits (66), Expect = 4.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 Query: 11 TLIXHCIPTGLMGFVTAHQPKAWHATIHIWFHI 109 T I C P+G M F T P AW A + WF + Sbjct: 182 TRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDV 214
>APAH_BORPA (Q7W3V0) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 277 Score = 30.0 bits (66), Expect = 4.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 Query: 11 TLIXHCIPTGLMGFVTAHQPKAWHATIHIWFHI 109 T I C P+G M F T P AW A + WF + Sbjct: 182 TRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDV 214
>APAH_BORBR (Q7WF80) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 277 Score = 30.0 bits (66), Expect = 4.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 Query: 11 TLIXHCIPTGLMGFVTAHQPKAWHATIHIWFHI 109 T I C P+G M F T P AW A + WF + Sbjct: 182 TRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDV 214
>PUR5_PSEPK (Q88MA9) Phosphoribosylformylglycinamidine cyclo-ligase (EC| 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) Length = 352 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +2 Query: 401 DQHHVHHVLCSGARHIDCEAQDAVPQAIHNGLALAGD 511 D+H +H VL G + C AQD V A+ N L AG+ Sbjct: 291 DEHEMHRVLNCGVGMVICVAQDQVEAAL-NELRAAGE 326
>ZBP1_RAT (Q8VDA5) Z-DNA-binding protein 1 (Tumor stroma and activated| macrophage protein DLM-1) Length = 409 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/34 (35%), Positives = 23/34 (67%) Frame = +3 Query: 84 PRSTYGSI*VLNNKACIILDSTVGNS*QTTNHRQ 185 P G+ +++ K+C++ D+TVGN+ + T HR+ Sbjct: 300 PHPEGGTTQIVHIKSCLLEDTTVGNNNKMTIHRR 333
>OPPD_BACSU (P24136) Oligopeptide transport ATP-binding protein oppD| Length = 358 Score = 28.9 bits (63), Expect = 9.6 Identities = 19/73 (26%), Positives = 33/73 (45%) Frame = -2 Query: 514 GIARQRQAIVDGLRDSVLGFAVNVPGTTAKDVMDMVLITQYFDTMKEIGASSKSSAVFIP 335 G RQR I L + + P T +D+ + Q + MK++ +S +FI Sbjct: 161 GGMRQRVVIAMALAANPKLLIADEPTTA----LDVTIQAQILELMKDLQKKIDTSIIFIT 216 Query: 334 HGPGAVRDIATQI 296 H G V ++A ++ Sbjct: 217 HDLGVVANVADRV 229 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,855,237 Number of Sequences: 219361 Number of extensions: 1821067 Number of successful extensions: 4874 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4751 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4865 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
