ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2k13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT008978.1| Triticum aestivum clone wdk2c.pk005.h13:fis, full... 139 1e-29
2dbj|AK099302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 5e-23
3dbj|AK063765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 5e-23
4gb|BT018881.1| Zea mays clone EL01T0203E10.d mRNA sequence 105 2e-19
5gb|AY103979.1| Zea mays PCO072809 mRNA sequence 105 2e-19
6emb|AJ299251.1|NTA299251 Nicotiana tabacum partial mRNA for lysy... 98 5e-17
7ref|NM_112003.2| Arabidopsis thaliana ATP binding / aspartate-tR... 82 3e-12
8gb|AY099551.1| Arabidopsis thaliana lysyl-tRNA synthetase (At3g1... 82 3e-12
9gb|BT002123.1| Arabidopsis thaliana lysyl-tRNA synthetase (At3g1... 82 3e-12
10gb|AF125574.1|AF125574 Arabidopsis thaliana lysyl-tRNA synthetas... 82 3e-12
11emb|AJ639767.1| Psidium guajava microsatellite DNA, clone mPgCIR18 78 5e-11
12gb|AC009918.5|ATAC009918 Arabidopsis thaliana chromosome III BAC... 70 1e-08
13gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC... 70 1e-08
14gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete s... 70 1e-08
15gb|AC125475.11| Medicago truncatula clone mth2-5j2, complete seq... 70 1e-08
16gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 58 4e-05
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 4e-05
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
19gb|AC148970.3| Medicago truncatula chromosome 2 BAC clone mth2-7... 56 2e-04
20dbj|AK114863.1| Ciona intestinalis cDNA, clone:cieg020g13, full ... 56 2e-04
21emb|X94451.1|LELYSRSGN L.esculentum mRNA for lysyl-tRNA syntheta... 52 0.003
22dbj|AP000411.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 52 0.003
23gb|AY618159.1| Sterkiella histriomuscorum clone UGC1O0006_L10_R ... 50 0.011
24gb|BC102322.1| Bos taurus similar to Lysyl-tRNA synthetase (Lysi... 50 0.011
25ref|NM_001034356.1| Bos taurus similar to Lysyl-tRNA synthetase ... 50 0.011
26gb|AY871281.1| Gekko japonicus GekBS062P mRNA, complete cds 50 0.011
27ref|XM_963119.1| PREDICTED: Tribolium castaneum similar to CG121... 46 0.16
28ref|XM_511115.1| PREDICTED: Pan troglodytes similar to lysyl-tRN... 42 2.6
29gb|BC076028.1| Danio rerio lysyl-tRNA synthetase, mRNA (cDNA clo... 42 2.6
30gb|AC161581.3| Mus musculus chromosome 15, clone RP24-75A19, com... 42 2.6
31gb|AY648786.1| Danio rerio lysyl-tRNA synthetase mRNA, complete cds 42 2.6
32ref|XM_413700.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 42 2.6
33ref|XM_805362.1| Trypanosoma cruzi strain CL Brener lysyl-tRNA s... 42 2.6
34gb|AC092590.2| Homo sapiens BAC clone RP11-45K3 from 7, complete... 42 2.6
35ref|XM_788370.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.6
36emb|Z31711.1|CLLYTRSY C.longicaudatus mRNA for lysyl tRNA synthe... 42 2.6
37emb|CR857191.1| Pongo pygmaeus mRNA; cDNA DKFZp468A0216 (from cl... 42 2.6
38gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complet... 42 2.6
39emb|CR407172.1| Gallus gallus finished cDNA, clone ChEST745g19 42 2.6
40ref|NM_001002386.1| Danio rerio lysyl-tRNA synthetase (kars), mRNA 42 2.6
41gb|AC007040.2|AC007040 Homo sapiens BAC clone RP11-298H3 from 2,... 42 2.6 
>gb|BT008978.1| Triticum aestivum clone wdk2c.pk005.h13:fis, full insert mRNA
           sequence
          Length = 702

 Score =  139 bits (70), Expect = 1e-29
 Identities = 292/366 (79%)
 Strand = Plus / Minus

                                                                       
Query: 113 ttggggcttcattgttgggaatagaagaacctccttgatgttctgtgagtccgtcagaag 172
           |||||||||||| |  ||||| |  ||||| |||||||||||||| || || ||||| | 
Sbjct: 407 ttggggcttcatggccgggaacaagagaacttccttgatgttctgggaatctgtcagcat 348

                                                                       
Query: 173 cattgcgatccgatcaattcccatcccccaaccgcccgttggtggcaaagcatactcgag 232
           |||||  |  |||||||||||||  |||||||| || || || ||||   ||||||||||
Sbjct: 347 cattgtaaggcgatcaattcccaaaccccaaccacctgtcggaggcagcccatactcgag 288

                                                                       
Query: 233 agcagtgcagaacgcttcatcgagggccatcgcttcatcgtctcccgattgacgactcct 292
            ||||||||||| | ||| || |  ||||| |||||||| || || |||||||||  | |
Sbjct: 287 ggcagtgcagaatgtttcgtccaaagccatagcttcatcatcaccagattgacgatcctt 228

                                                                       
Query: 293 cagctgatcttcaaaccgttgtctttgcaccaatggatcattcaactcggtgtaggcatt 352
            || || || ||||||||||| |||||||| |  ||||| |||||||| |||||||||||
Sbjct: 227 tagttgttcctcaaaccgttgcctttgcacaacaggatcgttcaactcagtgtaggcatt 168

                                                                       
Query: 353 gcacacctcatgcttgttgatgaacaactcaaatctttctgtcagtcctgactgagtcct 412
           ||||||||| || ||||| |  || | |||||| ||||||||||  || |   | | |||
Sbjct: 167 gcacacctcgtgtttgttaacaaagagctcaaacctttctgtcaacccaggtcgggacct 108

                                                                       
Query: 413 gtgccatttggccagtgggctcattatctctggatggttaatgataaaagttgggttcac 472
            ||||| || |||| ||| |||||||||||||| ||||| || ||||| |||||||||||
Sbjct: 107 atgccactttgccaatggactcattatctctgggtggttgataataaatgttgggttcac 48

                 
Query: 473 acatgt 478
           ||||||
Sbjct: 47  acatgt 42
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>dbj|AK099302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143D06, full
            insert sequence
          Length = 2164

 Score =  117 bits (59), Expect = 5e-23
 Identities = 308/391 (78%)
 Strand = Plus / Minus

                                                                        
Query: 129  gggaatagaagaacctccttgatgttctgtgagtccgtcagaagcattgcgatccgatca 188
            |||||||||||||| |||||||| ||||| || || ||||| | |||||  |  ||||||
Sbjct: 1898 gggaatagaagaacttccttgatattctgagaatcagtcagcaacattgtaaggcgatca 1839

                                                                        
Query: 189  attcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgcagaacgct 248
            |||||||  |||||||| || || ||||| |   ||||||| || || |||||||| | |
Sbjct: 1838 attcccaatccccaaccaccagtcggtggtaggccatactcaagggctgtgcagaatgtt 1779

                                                                        
Query: 249  tcatcgagggccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaac 308
            ||||| |  ||||| |||||||| || || |||||||||  | | || || || ||||||
Sbjct: 1778 tcatccaatgccatagcttcatcatcaccagattgacgatcctttagttgttcctcaaac 1719

                                                                        
Query: 309  cgttgtctttgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttg 368
            ||||| || || || |  |||||||| ||||| || || |||||||||||||||||||||
Sbjct: 1718 cgttgcctctgaacaacaggatcatttaactctgtatatgcattgcacacctcatgcttg 1659

                                                                        
Query: 369  ttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagt 428
            || |  || | |||||| || || |||| ||| |   ||| ||| ||||| || |||| |
Sbjct: 1658 ttaacaaagagctcaaacctctcagtcaatccaggtcgagacctatgccactttgccaat 1599

                                                                        
Query: 429  gggctcattatctctggatggttaatgataaaagttgggttcacacatgtggcctccaga 488
            || |||||||||||||||||||| || ||||| || || |||||||||||  ||||||  
Sbjct: 1598 ggactcattatctctggatggttgataataaacgtgggattcacacatgtctcctccaag 1539

                                           
Query: 489  aaatgcccagtaatcttgtcaagcaaccgtg 519
            ||||| |||   | ||| |||||||||||||
Sbjct: 1538 aaatggccaactagcttatcaagcaaccgtg 1508
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>dbj|AK063765.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B05, full
            insert sequence
          Length = 2215

 Score =  117 bits (59), Expect = 5e-23
 Identities = 308/391 (78%)
 Strand = Plus / Minus

                                                                        
Query: 129  gggaatagaagaacctccttgatgttctgtgagtccgtcagaagcattgcgatccgatca 188
            |||||||||||||| |||||||| ||||| || || ||||| | |||||  |  ||||||
Sbjct: 1898 gggaatagaagaacttccttgatattctgagaatcagtcagcaacattgtaaggcgatca 1839

                                                                        
Query: 189  attcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgcagaacgct 248
            |||||||  |||||||| || || ||||| |   ||||||| || || |||||||| | |
Sbjct: 1838 attcccaatccccaaccaccagtcggtggtaggccatactcaagggctgtgcagaatgtt 1779

                                                                        
Query: 249  tcatcgagggccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaac 308
            ||||| |  ||||| |||||||| || || |||||||||  | | || || || ||||||
Sbjct: 1778 tcatccaatgccatagcttcatcatcaccagattgacgatcctttagttgttcctcaaac 1719

                                                                        
Query: 309  cgttgtctttgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttg 368
            ||||| || || || |  |||||||| ||||| || || |||||||||||||||||||||
Sbjct: 1718 cgttgcctctgaacaacaggatcatttaactctgtatatgcattgcacacctcatgcttg 1659

                                                                        
Query: 369  ttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagt 428
            || |  || | |||||| || || |||| ||| |   ||| ||| ||||| || |||| |
Sbjct: 1658 ttaacaaagagctcaaacctctcagtcaatccaggtcgagacctatgccactttgccaat 1599

                                                                        
Query: 429  gggctcattatctctggatggttaatgataaaagttgggttcacacatgtggcctccaga 488
            || |||||||||||||||||||| || ||||| || || |||||||||||  ||||||  
Sbjct: 1598 ggactcattatctctggatggttgataataaacgtgggattcacacatgtctcctccaag 1539

                                           
Query: 489  aaatgcccagtaatcttgtcaagcaaccgtg 519
            ||||| |||   | ||| |||||||||||||
Sbjct: 1538 aaatggccaactagcttatcaagcaaccgtg 1508



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/45 (91%), Gaps = 1/45 (2%)
 Strand = Plus / Minus

                                                         
Query: 645  atcatgtctatccttctgtaanggaggtgtgaaatcgatctctat 689
            |||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 1382 atcatgtctatctttctg-aagggaggtgtgaaatcaatctctat 1339
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>gb|BT018881.1| Zea mays clone EL01T0203E10.d mRNA sequence
          Length = 2292

 Score =  105 bits (53), Expect = 2e-19
 Identities = 305/389 (78%)
 Strand = Plus / Minus

                                                                        
Query: 129  gggaatagaagaacctccttgatgttctgtgagtccgtcagaagcattgcgatccgatca 188
            ||||||||||| || ||||| |||||||| || || || || | ||| | ||  ||||||
Sbjct: 1865 gggaatagaagtacttccttaatgttctgagaatctgttagcaacatcgtgaggcgatca 1806

                                                                        
Query: 189  attcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgcagaacgct 248
            |||||||  |||||||| || ||||||| |||| ||||||| || ||||| ||||| | |
Sbjct: 1805 attcccaagccccaaccacctgttggtgccaaaccatactcaagggcagtacagaatgtt 1746

                                                                        
Query: 249  tcatcgagggccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaac 308
            || || |  ||||| ||||| || || || ||||||||   | | || || || ||||||
Sbjct: 1745 tcgtccaaagccatagcttcgtcatcaccagattgacggtcctttagttgttcctcaaac 1686

                                                                        
Query: 309  cgttgtctttgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttg 368
            ||||| || ||||| |  ||||| |||||||| ||||| || |||||||||||||| |||
Sbjct: 1685 cgttgcctctgcacaacaggatcgttcaactctgtgtatgcgttgcacacctcatgtttg 1626

                                                                        
Query: 369  ttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagt 428
            || |  |||||||| || || || |||| ||| |   | | ||| ||||| || || | |
Sbjct: 1625 ttaacaaacaactcgaacctctcagtcaatccaggtcgggacctatgccactttgctaat 1566

                                                                        
Query: 429  gggctcattatctctggatggttaatgataaaagttgggttcacacatgtggcctccaga 488
            || ||||||||||||||||| || |||||||| ||||| |||||||||||  ||||||  
Sbjct: 1565 ggactcattatctctggatgattgatgataaatgttggattcacacatgtctcctccaag 1506

                                         
Query: 489  aaatgcccagtaatcttgtcaagcaaccg 517
            ||||| |||   | |||||||||||||||
Sbjct: 1505 aaatggccaaccaacttgtcaagcaaccg 1477
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>gb|AY103979.1| Zea mays PCO072809 mRNA sequence
          Length = 2220

 Score =  105 bits (53), Expect = 2e-19
 Identities = 305/389 (78%)
 Strand = Plus / Minus

                                                                        
Query: 129  gggaatagaagaacctccttgatgttctgtgagtccgtcagaagcattgcgatccgatca 188
            ||||||||||| || ||||| |||||||| || || || || | ||| | ||  ||||||
Sbjct: 1885 gggaatagaagtacttccttaatgttctgagaatctgttagcaacatcgtgaggcgatca 1826

                                                                        
Query: 189  attcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgcagaacgct 248
            |||||||  |||||||| || ||||||| |||| ||||||| || ||||| ||||| | |
Sbjct: 1825 attcccaagccccaaccacctgttggtgccaaaccatactcaagggcagtacagaatgtt 1766

                                                                        
Query: 249  tcatcgagggccatcgcttcatcgtctcccgattgacgactcctcagctgatcttcaaac 308
            || || |  ||||| ||||| || || || ||||||||   | | || || || ||||||
Sbjct: 1765 tcgtccaaagccatagcttcgtcatcaccagattgacggtcctttagttgttcctcaaac 1706

                                                                        
Query: 309  cgttgtctttgcaccaatggatcattcaactcggtgtaggcattgcacacctcatgcttg 368
            ||||| || ||||| |  ||||| |||||||| ||||| || |||||||||||||| |||
Sbjct: 1705 cgttgcctctgcacaacaggatcgttcaactctgtgtatgcgttgcacacctcatgtttg 1646

                                                                        
Query: 369  ttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgccatttggccagt 428
            || |  |||||||| || || || |||| ||| |   | | ||| ||||| || || | |
Sbjct: 1645 ttaacaaacaactcgaacctctcagtcaatccaggtcgggacctatgccactttgctaat 1586

                                                                        
Query: 429  gggctcattatctctggatggttaatgataaaagttgggttcacacatgtggcctccaga 488
            || ||||||||||||||||| || |||||||| ||||| |||||||||||  ||||||  
Sbjct: 1585 ggactcattatctctggatgattgatgataaatgttggattcacacatgtctcctccaag 1526

                                         
Query: 489  aaatgcccagtaatcttgtcaagcaaccg 517
            ||||| |||   | |||||||||||||||
Sbjct: 1525 aaatggccaaccaacttgtcaagcaaccg 1497
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>emb|AJ299251.1|NTA299251 Nicotiana tabacum partial mRNA for lysyl-tRNA synthetase (lysRS
           gene)
          Length = 702

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 124/149 (83%)
 Strand = Plus / Minus

                                                                       
Query: 330 tcattcaactcggtgtaggcattgcacacctcatgcttgttgatgaacaactcaaatctt 389
           |||||||| || ||||| |||||||| |  ||||||||||| |||||||| ||||| | |
Sbjct: 155 tcattcaattcagtgtatgcattgcaaagttcatgcttgttaatgaacaattcaaaacgt 96

                                                                       
Query: 390 tctgtcagtcctgactgagtcctgtgccatttggccagtgggctcattatctctggatgg 449
           |||||||| ||||  | ||  |||||||| || ||||  || ||||||||||| ||||||
Sbjct: 95  tctgtcaggcctggtttagatctgtgccactttgccaaaggactcattatctcgggatgg 36

                                        
Query: 450 ttaatgataaaagttgggttcacacatgt 478
           || ||||||||||| ||||| ||||||||
Sbjct: 35  ttgatgataaaagtagggttaacacatgt 7
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>ref|NM_112003.2| Arabidopsis thaliana ATP binding / aspartate-tRNA ligase/ lysine-tRNA
            ligase/ nucleic acid binding / tRNA ligase AT3G11710
            mRNA, complete cds
          Length = 2155

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 113/137 (82%)
 Strand = Plus / Minus

                                                                        
Query: 342  gtgtaggcattgcacacctcatgcttgttgatgaacaactcaaatctttctgtcagtcct 401
            |||||||||||||| |  ||||| ||||||||||||| ||| ||||| ||||||| ||| 
Sbjct: 1689 gtgtaggcattgcagagttcatgtttgttgatgaacagctcgaatctctctgtcaatcca 1630

                                                                        
Query: 402  gactgagtcctgtgccatttggccagtgggctcattatctctggatggttaatgataaaa 461
              ||  |  ||||||||||| ||||  || ||||| ||||| || ||||| ||||| |||
Sbjct: 1629 ctcttcgatctgtgccatttagccaaaggactcatgatctcgggctggttgatgatgaaa 1570

                             
Query: 462  gttgggttcacacatgt 478
            |||||||||||||||||
Sbjct: 1569 gttgggttcacacatgt 1553



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 137  aagaacctccttgatgttctgtgagtccgtcagaagcat 175
            ||||||||||||||||||| ||||||| |||| ||||||
Sbjct: 1894 aagaacctccttgatgttcagtgagtcggtcaaaagcat 1856
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>gb|AY099551.1| Arabidopsis thaliana lysyl-tRNA synthetase (At3g11710) mRNA, complete
            cds
          Length = 2083

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 113/137 (82%)
 Strand = Plus / Minus

                                                                        
Query: 342  gtgtaggcattgcacacctcatgcttgttgatgaacaactcaaatctttctgtcagtcct 401
            |||||||||||||| |  ||||| ||||||||||||| ||| ||||| ||||||| ||| 
Sbjct: 1665 gtgtaggcattgcagagttcatgtttgttgatgaacagctcgaatctctctgtcaatcca 1606

                                                                        
Query: 402  gactgagtcctgtgccatttggccagtgggctcattatctctggatggttaatgataaaa 461
              ||  |  ||||||||||| ||||  || ||||| ||||| || ||||| ||||| |||
Sbjct: 1605 ctcttcgatctgtgccatttagccaaaggactcatgatctcgggctggttgatgatgaaa 1546

                             
Query: 462  gttgggttcacacatgt 478
            |||||||||||||||||
Sbjct: 1545 gttgggttcacacatgt 1529



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 137  aagaacctccttgatgttctgtgagtccgtcagaagcat 175
            ||||||||||||||||||| ||||||| |||| ||||||
Sbjct: 1870 aagaacctccttgatgttcagtgagtcggtcaaaagcat 1832
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>gb|BT002123.1| Arabidopsis thaliana lysyl-tRNA synthetase (At3g11710) mRNA, complete
            cds
          Length = 1938

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 113/137 (82%)
 Strand = Plus / Minus

                                                                        
Query: 342  gtgtaggcattgcacacctcatgcttgttgatgaacaactcaaatctttctgtcagtcct 401
            |||||||||||||| |  ||||| ||||||||||||| ||| ||||| ||||||| ||| 
Sbjct: 1601 gtgtaggcattgcagagttcatgtttgttgatgaacagctcgaatctctctgtcaatcca 1542

                                                                        
Query: 402  gactgagtcctgtgccatttggccagtgggctcattatctctggatggttaatgataaaa 461
              ||  |  ||||||||||| ||||  || ||||| ||||| || ||||| ||||| |||
Sbjct: 1541 ctcttcgatctgtgccatttagccaaaggactcatgatctcgggctggttgatgatgaaa 1482

                             
Query: 462  gttgggttcacacatgt 478
            |||||||||||||||||
Sbjct: 1481 gttgggttcacacatgt 1465



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 137  aagaacctccttgatgttctgtgagtccgtcagaagcat 175
            ||||||||||||||||||| ||||||| |||| ||||||
Sbjct: 1806 aagaacctccttgatgttcagtgagtcggtcaaaagcat 1768
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>gb|AF125574.1|AF125574 Arabidopsis thaliana lysyl-tRNA synthetase mRNA, complete cds
          Length = 2193

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 113/137 (82%)
 Strand = Plus / Minus

                                                                        
Query: 342  gtgtaggcattgcacacctcatgcttgttgatgaacaactcaaatctttctgtcagtcct 401
            |||||||||||||| |  ||||| ||||||||||||| ||| ||||| ||||||| ||| 
Sbjct: 1687 gtgtaggcattgcagagttcatgtttgttgatgaacagctcgaatctctctgtcaatcca 1628

                                                                        
Query: 402  gactgagtcctgtgccatttggccagtgggctcattatctctggatggttaatgataaaa 461
              ||  |  ||||||||||| ||||  || ||||| ||||| || ||||| ||||| |||
Sbjct: 1627 ctcttcgatctgtgccatttagccaaaggactcatgatctcgggctggttgatgatgaaa 1568

                             
Query: 462  gttgggttcacacatgt 478
            |||||||||||||||||
Sbjct: 1567 gttgggttcacacatgt 1551



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 137  aagaacctccttgatgttctgtgagtccgtcagaagcat 175
            ||||||||||||||||||| ||||||| |||| ||||||
Sbjct: 1892 aagaacctccttgatgttcagtgagtcggtcaaaagcat 1854
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>emb|AJ639767.1| Psidium guajava microsatellite DNA, clone mPgCIR18
          Length = 356

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 108/131 (82%)
 Strand = Plus / Plus

                                                                       
Query: 153 ttctgtgagtccgtcagaagcattgcgatccgatcaattcccatcccccaaccgcccgtt 212
           ||||||||||| |||| |||||| || | || |||||| ||||||||||| || || |||
Sbjct: 114 ttctgtgagtctgtcaaaagcatggcaagcctatcaatacccatcccccagcctccagtt 173

                                                                       
Query: 213 ggtggcaaagcatactcgagagcagtgcagaacgcttcatcgagggccatcgcttcatcg 272
           || |||||| ||||||| || || |  ||||||| |||||| |  ||||| |||||||| 
Sbjct: 174 ggaggcaaaccatactcaagtgcggaacagaacgtttcatccaaagccatggcttcatca 233

                      
Query: 273 tctcccgattg 283
           |||||||||||
Sbjct: 234 tctcccgattg 244
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>gb|AC009918.5|ATAC009918 Arabidopsis thaliana chromosome III BAC T19F11 genomic sequence,
             complete sequence
          Length = 45173

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 98/119 (82%)
 Strand = Plus / Plus

                                                                         
Query: 360   tcatgcttgttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgccat 419
             ||||| ||||||||||||| ||| ||||| ||||||| |||   ||  |  |||||||||
Sbjct: 39609 tcatgtttgttgatgaacagctcgaatctctctgtcaatccactcttcgatctgtgccat 39668

                                                                        
Query: 420   ttggccagtgggctcattatctctggatggttaatgataaaagttgggttcacacatgt 478
             || ||||  || ||||| ||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 39669 ttagccaaaggactcatgatctcgggctggttgatgatgaaagttgggttcacacatgt 39727
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>gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC F26K24 genomic sequence,
            complete sequence
          Length = 100835

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 98/119 (82%)
 Strand = Plus / Plus

                                                                        
Query: 360  tcatgcttgttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgccat 419
            ||||| ||||||||||||| ||| ||||| ||||||| |||   ||  |  |||||||||
Sbjct: 3441 tcatgtttgttgatgaacagctcgaatctctctgtcaatccactcttcgatctgtgccat 3500

                                                                       
Query: 420  ttggccagtgggctcattatctctggatggttaatgataaaagttgggttcacacatgt 478
            || ||||  || ||||| ||||| || ||||| ||||| ||||||||||||||||||||
Sbjct: 3501 ttagccaaaggactcatgatctcgggctggttgatgatgaaagttgggttcacacatgt 3559
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>gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete sequence
          Length = 129948

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 83/99 (83%)
 Strand = Plus / Minus

                                                                         
Query: 185   atcaattcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgcagaa 244
             |||||| ||||| ||||||||||| |||||||||| | ||||||| | ||||||||| ||
Sbjct: 97817 atcaatacccataccccaaccgccagttggtggcataccatactccaaagcagtgcaaaa 97758

                                                    
Query: 245   cgcttcatcgagggccatcgcttcatcgtctcccgattg 283
               | || || | ||||||||||||||| || ||||||||
Sbjct: 97757 ttcctcgtctaaggccatcgcttcatcatcccccgattg 97719
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>gb|AC125475.11| Medicago truncatula clone mth2-5j2, complete sequence
          Length = 165679

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 83/99 (83%)
 Strand = Plus / Plus

                                                                         
Query: 185   atcaattcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgcagaa 244
             |||||| ||||| ||||||||||| |||||||||| | ||||||| | ||||||||| ||
Sbjct: 97026 atcaatacccataccccaaccgccagttggtggcataccatactccaaagcagtgcaaaa 97085

                                                    
Query: 245   cgcttcatcgagggccatcgcttcatcgtctcccgattg 283
               | || || | ||||||||||||||| || ||||||||
Sbjct: 97086 ttcctcgtctaaggccatcgcttcatcatcccccgattg 97124
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                          
Query: 414    tgccatttggccagtgggctcattatctctggatggttaatgataaaagttgggttcaca 473
              ||||| || |||| ||| |||||||||||||||||||| || ||||| || || ||||||
Sbjct: 167865 tgccactttgccaatggactcattatctctggatggttgataataaacgtgggattcaca 167924

                   
Query: 474    catgt 478
              |||||
Sbjct: 167925 catgt 167929



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 84/105 (80%)
 Strand = Plus / Plus

                                                                          
Query: 183    cgatcaattcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgcag 242
              |||||||||||||  |||||||| || || ||||| |   ||||||| || || ||||||
Sbjct: 167141 cgatcaattcccaatccccaaccaccagtcggtggtaggccatactcaagggctgtgcag 167200

                                                           
Query: 243    aacgcttcatcgagggccatcgcttcatcgtctcccgattgacga 287
              || | |||||| |  ||||| |||||||| || || |||||||||
Sbjct: 167201 aatgtttcatccaatgccatagcttcatcatcaccagattgacga 167245
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 414      tgccatttggccagtgggctcattatctctggatggttaatgataaaagttgggttcaca 473
                ||||| || |||| ||| |||||||||||||||||||| || ||||| || || ||||||
Sbjct: 21474954 tgccactttgccaatggactcattatctctggatggttgataataaacgtgggattcaca 21475013

                     
Query: 474      catgt 478
                |||||
Sbjct: 21475014 catgt 21475018



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 84/105 (80%)
 Strand = Plus / Plus

                                                                            
Query: 183      cgatcaattcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgcag 242
                |||||||||||||  |||||||| || || ||||| |   ||||||| || || ||||||
Sbjct: 21474230 cgatcaattcccaatccccaaccaccagtcggtggtaggccatactcaagggctgtgcag 21474289

                                                             
Query: 243      aacgcttcatcgagggccatcgcttcatcgtctcccgattgacga 287
                || | |||||| |  ||||| |||||||| || || |||||||||
Sbjct: 21474290 aatgtttcatccaatgccatagcttcatcatcaccagattgacga 21474334
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                            
Query: 414      tgccatttggccagtgggctcattatctctggatggttaatgataaaagttgggttcaca 473
                ||||| || |||| ||| |||||||||||||||||||| || ||||| || || ||||||
Sbjct: 21467983 tgccactttgccaatggactcattatctctggatggttgataataaacgtgggattcaca 21468042

                     
Query: 474      catgt 478
                |||||
Sbjct: 21468043 catgt 21468047



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 84/105 (80%)
 Strand = Plus / Plus

                                                                            
Query: 183      cgatcaattcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgcag 242
                |||||||||||||  |||||||| || || ||||| |   ||||||| || || ||||||
Sbjct: 21467259 cgatcaattcccaatccccaaccaccagtcggtggtaggccatactcaagggctgtgcag 21467318

                                                             
Query: 243      aacgcttcatcgagggccatcgcttcatcgtctcccgattgacga 287
                || | |||||| |  ||||| |||||||| || || |||||||||
Sbjct: 21467319 aatgtttcatccaatgccatagcttcatcatcaccagattgacga 21467363
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>gb|AC148970.3| Medicago truncatula chromosome 2 BAC clone mth2-74j13, complete
             sequence
          Length = 83100

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 112/140 (80%)
 Strand = Plus / Minus

                                                                         
Query: 357   acctcatgcttgttgatgaacaactcaaatctttctgtcagtcctgactgagtcctgtgc 416
             |||||||| |||||||| ||||| ||||| | ||| ||||| ||||  |  || ||||||
Sbjct: 64304 acctcatgtttgttgataaacaattcaaaacgttcagtcaggcctggttttgttctgtgc 64245

                                                                         
Query: 417   catttggccagtgggctcattatctctggatggttaatgataaaagttgggttcacacat 476
             || || ||||  || |||||||||||||| ||||| ||||| || || || || ||||||
Sbjct: 64244 cacttcgccaaaggactcattatctctgggtggtttatgatgaatgtaggattgacacat 64185

                                 
Query: 477   gtggcctccagaaaatgccc 496
             ||  |||||| ||| |||||
Sbjct: 64184 gtttcctccaaaaagtgccc 64165



 Score = 44.1 bits (22), Expect = 0.65
 Identities = 82/102 (80%)
 Strand = Plus / Minus

                                                                         
Query: 182   ccgatcaattcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgca 241
             ||||||||| ||||  ||||||||  | |||||||||||| ||||||| | ||| |||||
Sbjct: 64677 ccgatcaatacccaaaccccaaccagcagttggtggcaaaccatactccaaagccgtgca 64618

                                                       
Query: 242   gaacgcttcatcgagggccatcgcttcatcgtctcccgattg 283
              || | ||| || | |||||| ||||| ||||| || |||||
Sbjct: 64617 aaatgtttcgtccaaggccattgcttcgtcgtcacctgattg 64576
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>dbj|AK114863.1| Ciona intestinalis cDNA, clone:cieg020g13, full insert sequence
          Length = 2205

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 185  atcaattcccatcccccaaccgcccgttggtggcaaagcatactcgagagcagtgcagaa 244
            |||||| ||||| |||||||| || |||||||||||| |||| || ||||| ||||||||
Sbjct: 1670 atcaatgcccataccccaaccaccagttggtggcaaaccatattcaagagctgtgcagaa 1611
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>emb|X94451.1|LELYSRSGN L.esculentum mRNA for lysyl-tRNA synthetase (LysRS)
          Length = 2075

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 418  atttggccagtgggctcattatctctggatggttaatgataaaagt 463
            |||| |||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 1548 atttagccagtgggctcatgatctcaggatggttgataataaaagt 1503
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>dbj|AP000411.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K11J14
          Length = 90627

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 327   ggatcattcaactcggtgtaggcatt 352
             ||||||||||||||||||||||||||
Sbjct: 15373 ggatcattcaactcggtgtaggcatt 15398
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>gb|AY618159.1| Sterkiella histriomuscorum clone UGC1O0006_L10_R genomic sequence
          Length = 664

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 82/101 (81%)
 Strand = Plus / Plus

                                                                       
Query: 117 ggcttcattgttgggaatagaagaacctccttgatgttctgtgagtccgtcagaagcatt 176
           |||||||| | |||||| |||||||||||||||||| | | |||||| | || |||||| 
Sbjct: 129 ggcttcatggctgggaagagaagaacctccttgatgctgtttgagtcagacataagcatg 188

                                                    
Query: 177 gcgatccgatcaattcccatcccccaaccgcccgttggtgg 217
           ||||  | ||| || || || |||||||| || ||||||||
Sbjct: 189 gcgagtctatcgataccaataccccaacctccagttggtgg 229
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>gb|BC102322.1| Bos taurus similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
            (LysRS), mRNA (cDNA clone MGC:127504 IMAGE:7950855),
            complete cds
          Length = 2262

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 413  gtgccatttggccagtgggctcattatct 441
            ||||||||||||||| |||||||||||||
Sbjct: 1624 gtgccatttggccagagggctcattatct 1596
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>ref|NM_001034356.1| Bos taurus similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
            (LysRS) (MGC127504), mRNA
          Length = 2262

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 413  gtgccatttggccagtgggctcattatct 441
            ||||||||||||||| |||||||||||||
Sbjct: 1624 gtgccatttggccagagggctcattatct 1596
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>gb|AY871281.1| Gekko japonicus GekBS062P mRNA, complete cds
          Length = 2019

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 413  gtgccatttggccagtgggctcattatct 441
            ||||||||||||||| |||||||||||||
Sbjct: 1444 gtgccatttggccagagggctcattatct 1416
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>ref|XM_963119.1| PREDICTED: Tribolium castaneum similar to CG12141-PA, isoform A
            (LOC656600), mRNA
          Length = 1754

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 300  tcttcaaaccgttgtctttgcaccaatggatcatt 334
            ||||||||||| |||||||||||||  ||||||||
Sbjct: 1484 tcttcaaaccgctgtctttgcaccatcggatcatt 1450
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>ref|XM_511115.1| PREDICTED: Pan troglodytes similar to lysyl-tRNA synthetase
            (LOC454252), mRNA
          Length = 1878

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 327  ggatcattcaactcggtgtaggcattgca 355
            |||||||||| ||| ||||||||||||||
Sbjct: 1598 ggatcattcagctcagtgtaggcattgca 1570
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>gb|BC076028.1| Danio rerio lysyl-tRNA synthetase, mRNA (cDNA clone MGC:92483
            IMAGE:7045855), complete cds
          Length = 2247

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 327  ggatcattcaactcggtgtaggcattgca 355
            ||||| |||||||| ||||||||||||||
Sbjct: 1607 ggatcgttcaactctgtgtaggcattgca 1579
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>gb|AC161581.3| Mus musculus chromosome 15, clone RP24-75A19, complete sequence
          Length = 210059

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 346    aggcattgcacacctcatgct 366
              |||||||||||||||||||||
Sbjct: 107897 aggcattgcacacctcatgct 107917
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>gb|AY648786.1| Danio rerio lysyl-tRNA synthetase mRNA, complete cds
          Length = 2102

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 327  ggatcattcaactcggtgtaggcattgca 355
            ||||| |||||||| ||||||||||||||
Sbjct: 1559 ggatcgttcaactctgtgtaggcattgca 1531
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>ref|XM_413700.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 6030419C18 gene
           (LOC415313), mRNA
          Length = 1147

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 200 ccaaccgcccgttggtggcaa 220
           |||||||||||||||||||||
Sbjct: 859 ccaaccgcccgttggtggcaa 879
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>ref|XM_805362.1| Trypanosoma cruzi strain CL Brener lysyl-tRNA synthetase
            (Tc00.1047053508971.30) partial mRNA
          Length = 1743

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 135  agaagaacctccttgatgttc 155
            |||||||||||||||||||||
Sbjct: 1655 agaagaacctccttgatgttc 1635
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>gb|AC092590.2| Homo sapiens BAC clone RP11-45K3 from 7, complete sequence
          Length = 127836

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 32    ttcttaattatgtacatgtaa 52
             |||||||||||||||||||||
Sbjct: 25189 ttcttaattatgtacatgtaa 25209
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>ref|XM_788370.1| PREDICTED: Strongylocentrotus purpuratus similar to lysyl-tRNA
            synthetase (LOC588700), mRNA
          Length = 1800

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 327  ggatcattcaactcggtgtaggcattgca 355
            |||||||||||||| |||||||| |||||
Sbjct: 1532 ggatcattcaactctgtgtaggcgttgca 1504
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>emb|Z31711.1|CLLYTRSY C.longicaudatus mRNA for lysyl tRNA synthetase
          Length = 1970

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 327  ggatcattcaactcggtgtaggcattgca 355
            |||||||||| ||| ||||||||||||||
Sbjct: 1534 ggatcattcagctcagtgtaggcattgca 1506



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 413  gtgccatttggccagtgggctcattatct 441
            ||||||||||||||| |||||||| ||||
Sbjct: 1448 gtgccatttggccagagggctcataatct 1420
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>emb|CR857191.1| Pongo pygmaeus mRNA; cDNA DKFZp468A0216 (from clone DKFZp468A0216)
          Length = 2168

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 327  ggatcattcaactcggtgtaggcattgca 355
            |||||||||| ||| ||||||||||||||
Sbjct: 1706 ggatcattcagctcagtgtaggcattgca 1678
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>gb|AC113579.3| Tetraodon nigroviridis clone GSTNA-27O10, complete sequence
          Length = 79804

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 386   tctttctgtcagtcctgactg 406
             |||||||||||||||||||||
Sbjct: 18890 tctttctgtcagtcctgactg 18910
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>emb|CR407172.1| Gallus gallus finished cDNA, clone ChEST745g19
          Length = 1149

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 200 ccaaccgcccgttggtggcaa 220
           |||||||||||||||||||||
Sbjct: 859 ccaaccgcccgttggtggcaa 879
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>ref|NM_001002386.1| Danio rerio lysyl-tRNA synthetase (kars), mRNA
          Length = 2247

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 327  ggatcattcaactcggtgtaggcattgca 355
            ||||| |||||||| ||||||||||||||
Sbjct: 1607 ggatcgttcaactctgtgtaggcattgca 1579
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>gb|AC007040.2|AC007040 Homo sapiens BAC clone RP11-298H3 from 2, complete sequence
          Length = 181671

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 413    gtgccatttggccagtgggct 433
              |||||||||||||||||||||
Sbjct: 149081 gtgccatttggccagtgggct 149101


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,828,855
Number of Sequences: 3902068
Number of extensions: 5828855
Number of successful extensions: 105391
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105172
Number of HSP's gapped (non-prelim): 206
length of query: 740
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 717
effective length of database: 17,143,297,704
effective search space: 12291744453768
effective search space used: 12291744453768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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