ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2k11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WIR1A_WHEAT (Q01482) WIR1A protein 32 0.003
2DNAJ_BRUOV (Q05980) Chaperone protein dnaJ 32 1.5
3ZAN_RABIT (P57999) Zonadhesin (Fragment) 30 7.5
4RS3_LISMO (P66548) 30S ribosomal protein S3 30 7.5
5RS3_LISMF (Q71WF2) 30S ribosomal protein S3 30 7.5
6RS3_LISIN (P66549) 30S ribosomal protein S3 30 7.5
7COFD_MYCPA (Q73UJ4) LPPG:FO 2-phopspho-L-lactate transferase (EC... 30 7.5

>WIR1A_WHEAT (Q01482) WIR1A protein|
          Length = 88

 Score = 31.6 bits (70), Expect(2) = 0.003
 Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -1

Query: 569 SMGXFARAARFLVLLQIALF-VISAVIISGPVC 474
           S+G  A   R  VLLQIALF V++A+II+  VC
Sbjct: 3   SLGSSAGGRRPTVLLQIALFVVVAAIIINSSVC 35



 Score = 28.9 bits (63), Expect(2) = 0.003
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 394 SGQPYTRPGCGTVYKC 347
           +GQPYT  GC TVY C
Sbjct: 65  AGQPYTGRGCRTVYGC 80



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>DNAJ_BRUOV (Q05980) Chaperone protein dnaJ|
          Length = 375

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +1

Query: 250 RTRQSHASTPWECDYSIVGEAGSAGARAEHLVGTCTRCRTQGECRAGQMVRTVHR 414
           +T Q    T   CD     E   +GA+      TCT C   G CRA Q   +V R
Sbjct: 134 KTAQIRVPTSITCD-----ECSGSGAKPGSQPTTCTMCSGSGRCRAAQGFFSVER 183



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>ZAN_RABIT (P57999) Zonadhesin (Fragment)|
          Length = 2282

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
 Frame = -3

Query: 444  CSGPRVVLCASVDGAHHLASPTLALGAAPCTS-------AHQ-VLSPSARRPRLPNNGVI 289
            C GP V  CAS+ G     + +L L    CTS        H  V +  ++R    ++GV+
Sbjct: 2102 CEGPCVEGCASLPGYAFSGAQSLPLANCGCTSNGIYYQLGHSFVTADCSQRCTCASSGVL 2161

Query: 288  ALPRRGCM-ALSCSQYQLLSGSYTEPNIIPCGRTD-MNDG 175
                  C    SC+   L  G + E    PC R    NDG
Sbjct: 2162 LCEPFSCRPGESCTLGNLTRGCFRES---PCLRNPCQNDG 2198



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>RS3_LISMO (P66548) 30S ribosomal protein S3|
          Length = 218

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 191 VRPHGMILGSV*DPDSNWYCEQDRA 265
           V P GM +G + D DS WY E+D A
Sbjct: 5   VHPIGMRIGVIRDWDSKWYAEKDYA 29



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>RS3_LISMF (Q71WF2) 30S ribosomal protein S3|
          Length = 218

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 191 VRPHGMILGSV*DPDSNWYCEQDRA 265
           V P GM +G + D DS WY E+D A
Sbjct: 5   VHPIGMRIGVIRDWDSKWYAEKDYA 29



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>RS3_LISIN (P66549) 30S ribosomal protein S3|
          Length = 218

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 191 VRPHGMILGSV*DPDSNWYCEQDRA 265
           V P GM +G + D DS WY E+D A
Sbjct: 5   VHPIGMRIGVIRDWDSKWYAEKDYA 29



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>COFD_MYCPA (Q73UJ4) LPPG:FO 2-phopspho-L-lactate transferase (EC 2.7.1.-)|
          Length = 337

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 371 WVRHRVQVPTRCSALAPADPASPTME 294
           WVR+R QVPT   A   A+ A+ T E
Sbjct: 179 WVRYRAQVPTHSFAFVGAEKAAATTE 204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,268,947
Number of Sequences: 219361
Number of extensions: 1854370
Number of successful extensions: 4873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4873
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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