ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2k03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC073027.1| Xenopus laevis cDNA clone IMAGE:5048869, partial cds 153 1e-34
2emb|CT027939.1| Xenopus tropicalis finished cDNA, clone TGas066o19 86 2e-14
3gb|AC150004.3| Mus musculus chromosome 7, clone RP24-368P9, comp... 38 5.1
4emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chr... 38 5.1
5gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, com... 38 5.1
6emb|AL935169.6| Zebrafish DNA sequence from clone CH211-227E15, ... 38 5.1
7gb|AC146978.7| Mus musculus chromosome 7, clone RP24-217F6, comp... 38 5.1
8gb|AC167161.10| Mus musculus chromosome 7, clone RP23-367H8, com... 38 5.1

>gb|BC073027.1| Xenopus laevis cDNA clone IMAGE:5048869, partial cds
          Length = 1910

 Score =  153 bits (77), Expect = 1e-34
 Identities = 103/113 (91%), Gaps = 1/113 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccggataccaacgatgctnggtngngtaaaacatttatgctaagctcttctatcgttg 60
           |||||||||||||||||| | ||| | ||||||||||| |||||||||||||||||||||
Sbjct: 428 caccggataccaacgatgtttggttgtgtaaaacattt-tgctaagctcttctatcgttg 370

                                                                
Query: 61  ncncaggtttagctntaacatcattaagtctgncctttaggacaagcncatgt 113
            | ||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 369 gctcaggtttagctttaacatcattaagtctggcctttaggacaagctcatgt 317



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>emb|CT027939.1| Xenopus tropicalis finished cDNA, clone TGas066o19
          Length = 559

 Score = 85.7 bits (43), Expect = 2e-14
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                       
Query: 40  tgctaagctcttctatcgttgncncaggtttagctntaacatcattaagtctgnccttta 99
           |||||||||||||| | |||| | ||||||||||| |||| |||||||| ||| ||||||
Sbjct: 371 tgctaagctcttcttttgttggctcaggtttagctttaacttcattaagcctggccttta 312

                         
Query: 100 ggacaagcncatgt 113
           |||||||| |||||
Sbjct: 311 ggacaagctcatgt 298



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>gb|AC150004.3| Mus musculus chromosome 7, clone RP24-368P9, complete sequence
          Length = 176113

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    acatttatgctaagctctt 51
             |||||||||||||||||||
Sbjct: 49775 acatttatgctaagctctt 49793



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>emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chromosome 17, complete
             sequence
          Length = 154367

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    acatttatgctaagctctt 51
             |||||||||||||||||||
Sbjct: 30191 acatttatgctaagctctt 30209



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>gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, complete sequence
          Length = 195549

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    acatttatgctaagctctt 51
             |||||||||||||||||||
Sbjct: 69687 acatttatgctaagctctt 69669



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>emb|AL935169.6| Zebrafish DNA sequence from clone CH211-227E15, complete sequence
          Length = 158122

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     aaaacatttatgctaagct 48
              |||||||||||||||||||
Sbjct: 138690 aaaacatttatgctaagct 138708



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>gb|AC146978.7| Mus musculus chromosome 7, clone RP24-217F6, complete sequence
          Length = 152682

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     acatttatgctaagctctt 51
              |||||||||||||||||||
Sbjct: 112459 acatttatgctaagctctt 112441



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>gb|AC167161.10| Mus musculus chromosome 7, clone RP23-367H8, complete sequence
          Length = 193612

 Score = 38.2 bits (19), Expect = 5.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     acatttatgctaagctctt 51
              |||||||||||||||||||
Sbjct: 136440 acatttatgctaagctctt 136422


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 435,847
Number of Sequences: 3902068
Number of extensions: 435847
Number of successful extensions: 28661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28652
Number of HSP's gapped (non-prelim): 8
length of query: 113
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 92
effective length of database: 17,151,101,840
effective search space: 1577901369280
effective search space used: 1577901369280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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