ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2j22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POF13_SCHPO (O94334) F-box protein pof13 32 1.6
2YPAH_PSELE (P52089) UPF0178 protein in pahZ1 5'region 32 2.1

>POF13_SCHPO (O94334) F-box protein pof13|
          Length = 396

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 322 TLTPVIFGSYLVFRVCLDLVPLAQPAPKQCFTPRCPVNCC 441
           TLT       ++F+  LD +P     P +C   RCP+N C
Sbjct: 223 TLTSNWHSRVILFQNALDALPTTHGNPVECDISRCPLNAC 262



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>YPAH_PSELE (P52089) UPF0178 protein in pahZ1 5'region|
          Length = 154

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -3

Query: 521 ISXXVVVRGEMPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASG 381
           ++  V+ +G +PL PR  W++   + AQQLT    ++   G+G  +G
Sbjct: 78  LASLVLEKGGLPLNPRGEWYTKDTI-AQQLTMRAFMEELRGSGVDTG 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,848,049
Number of Sequences: 219361
Number of extensions: 1646360
Number of successful extensions: 3555
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3555
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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