ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2j21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full... 64 3e-08
2dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 36 6.6

>gb|BT009573.1| Triticum aestivum clone wre1n.pk0027.d4:fis, full insert mRNA
           sequence
          Length = 1042

 Score = 63.9 bits (32), Expect = 3e-08
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 1   ttttctgacgntgctggcatagactgtaggancctgcttttgttgctcag 50
           |||||||||| || ||||||||||| ||||| ||||||||| ||||||||
Sbjct: 676 ttttctgacgttgttggcatagactctaggatcctgcttttcttgctcag 627



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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 36.2 bits (18), Expect = 6.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 14     ctggcatagactgtagga 31
              ||||||||||||||||||
Sbjct: 805694 ctggcatagactgtagga 805711


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 231,713
Number of Sequences: 3902068
Number of extensions: 231713
Number of successful extensions: 57992
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57989
Number of HSP's gapped (non-prelim): 3
length of query: 50
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 30
effective length of database: 17,155,003,908
effective search space: 514650117240
effective search space used: 514650117240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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