ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2j19 |
|---|---|
| Clone Library Name | barley_pub |
>PLDA1_BRAOC (O82549) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 810 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/18 (94%), Positives = 18/18 (100%) Frame = -2 Query: 299 RARILGTKSDYLPPILTT 246 +ARILGTKSDYLPPILTT Sbjct: 793 KARILGTKSDYLPPILTT 810
>PLDA1_ARATH (Q38882) Phospholipase D alpha 1 (EC 3.1.4.4) (AtPLDalpha1) (PLD| alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (PLDalpha) Length = 810 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/18 (94%), Positives = 18/18 (100%) Frame = -2 Query: 299 RARILGTKSDYLPPILTT 246 +ARILGTKSDYLPPILTT Sbjct: 793 KARILGTKSDYLPPILTT 810
>PLDA1_TOBAC (P93400) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 38.1 bits (87), Expect = 0.006 Identities = 16/18 (88%), Positives = 18/18 (100%) Frame = -2 Query: 299 RARILGTKSDYLPPILTT 246 +AR+LGTKSDYLPPILTT Sbjct: 791 KARVLGTKSDYLPPILTT 808
>PLDA1_MAIZE (Q43270) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 812 Score = 37.4 bits (85), Expect = 0.010 Identities = 16/18 (88%), Positives = 17/18 (94%) Frame = -2 Query: 299 RARILGTKSDYLPPILTT 246 RAR+LG KSDYLPPILTT Sbjct: 795 RARVLGNKSDYLPPILTT 812
>PLDA1_RICCO (Q41142) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 36.2 bits (82), Expect = 0.022 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -2 Query: 299 RARILGTKSDYLPPILTT 246 +AR+LG KSDYLPPILTT Sbjct: 791 KARVLGAKSDYLPPILTT 808
>PLDA2_ARATH (Q9SSQ9) Phospholipase D alpha 2 (EC 3.1.4.4) (AtPLDalpha2) (PLD| alpha 2) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 810 Score = 35.8 bits (81), Expect = 0.028 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -2 Query: 299 RARILGTKSDYLPPILTT 246 +ARILG KSDY+PPILTT Sbjct: 793 KARILGVKSDYMPPILTT 810
>PLDA1_VIGUN (O04865) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 809 Score = 35.4 bits (80), Expect = 0.037 Identities = 15/18 (83%), Positives = 17/18 (94%) Frame = -2 Query: 299 RARILGTKSDYLPPILTT 246 +ARILG K+DYLPPILTT Sbjct: 792 KARILGAKADYLPPILTT 809
>PLDA1_ORYSA (Q43007) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha| 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 812 Score = 35.0 bits (79), Expect = 0.048 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -2 Query: 299 RARILGTKSDYLPPILTT 246 RAR+LG KSDY+PPILT+ Sbjct: 795 RARVLGAKSDYMPPILTS 812
>PLDA1_PIMBR (O04883) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 34.7 bits (78), Expect = 0.063 Identities = 14/18 (77%), Positives = 17/18 (94%) Frame = -2 Query: 299 RARILGTKSDYLPPILTT 246 +AR+LG KSD+LPPILTT Sbjct: 791 KARVLGAKSDFLPPILTT 808
>PLDA2_BRAOC (P55939) Phospholipase D alpha 2 precursor (EC 3.1.4.4) (PLD 2)| (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 812 Score = 34.3 bits (77), Expect = 0.083 Identities = 15/18 (83%), Positives = 16/18 (88%) Frame = -2 Query: 299 RARILGTKSDYLPPILTT 246 +ARILG K DYLPPILTT Sbjct: 795 KARILGNKVDYLPPILTT 812
>HNF3B_MOUSE (P35583) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 459 Score = 32.0 bits (71), Expect = 0.41 Identities = 21/63 (33%), Positives = 27/63 (42%) Frame = +2 Query: 86 PPIVTTAFLNHAHHCAY*LSHNYNNLLFSETQVLNHQRNHQTEATHRKCRTQSMW*GWGE 265 P + A L HH A+ + NNL+ SE Q + +HQ K Q M G Sbjct: 357 PGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKAYEQVMHYPGGY 416 Query: 266 GSP 274 GSP Sbjct: 417 GSP 419
>HNF3B_RAT (P32182) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 458 Score = 31.6 bits (70), Expect = 0.54 Identities = 21/63 (33%), Positives = 27/63 (42%) Frame = +2 Query: 86 PPIVTTAFLNHAHHCAY*LSHNYNNLLFSETQVLNHQRNHQTEATHRKCRTQSMW*GWGE 265 P + A L HH A+ + NNL+ SE Q + +HQ K Q M G Sbjct: 356 PGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKTYEQVMHYPGGY 415 Query: 266 GSP 274 GSP Sbjct: 416 GSP 418
>PLDZ1_ARATH (P58766) Phospholipase D zeta (EC 3.1.4.4) (AtPLDzeta) (PLD zeta)| Length = 820 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/17 (64%), Positives = 16/17 (94%) Frame = -2 Query: 296 ARILGTKSDYLPPILTT 246 A+++G KS+YLPPILT+ Sbjct: 804 AKVVGEKSNYLPPILTS 820
>HNF3B_HUMAN (Q9Y261) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box| protein A2) Length = 457 Score = 29.3 bits (64), Expect = 2.7 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = +2 Query: 86 PPIVTTAFLNHAHHCAY*LSHNYNNLLFSETQVLNHQRNHQTEATHRKCRTQSM-W*GWG 262 P + A L HH A+ + NNL+ SE Q + +HQ K Q M + G+G Sbjct: 356 PGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHSHHHHQPHKMDLKAYEQVMHYPGYG 415 Query: 263 EGSP 274 P Sbjct: 416 SPMP 419
>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3| Length = 622 Score = 28.9 bits (63), Expect = 3.5 Identities = 10/18 (55%), Positives = 11/18 (61%) Frame = -1 Query: 300 PGPHPRHQVGLPSPHPHH 247 P PHP+ L SPHP H Sbjct: 400 PAPHPQQHSQLQSPHPQH 417
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 28.5 bits (62), Expect = 4.5 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Frame = +1 Query: 70 VATHQSSYSHYRVSQPCTPLRL----LTVPQL*QPAIF*NTSSESPKEPPNRGHTP 225 V+ Q S S V+ P P + PQL QPA+ N+ S P P HTP Sbjct: 791 VSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPALHQNSPSPVPSRTPTPHHTP 846
>BGLX_ERWCH (Q46684) Periplasmic beta-glucosidase/beta-xylosidase precursor| [Includes: Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase); Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan xylohydrolase) (Xylan 1,4-beta-xylosidase)] Length = 654 Score = 28.1 bits (61), Expect = 5.9 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -2 Query: 218 WPRFGGSFGDSELVFQKIAGCYSCGTVNKRSGVH 117 WPR G+FG+ + +K+ Y G N ++G++ Sbjct: 225 WPRIDGTFGEDPDLTKKMVRGYVTGMQNGKNGLN 258
>O51V1_HUMAN (Q9H2C8) Olfactory receptor 51V1 (Odorant receptor HOR3'beta1)| (Olfactory receptor OR11-36) Length = 321 Score = 28.1 bits (61), Expect = 5.9 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +2 Query: 38 VKYPSLILQRSWQHISPPIVTTAFLNHAHHCAY*LSHNY 154 +K I+ RS+ I+PPI+ F N+ H + LSH++ Sbjct: 151 IKIGLTIIGRSFFFITPPIICLKFFNYCHF--HILSHSF 187
>F118A_HUMAN (Q9NWS6) Protein FAM118A| Length = 357 Score = 27.7 bits (60), Expect = 7.7 Identities = 19/65 (29%), Positives = 31/65 (47%) Frame = +2 Query: 74 QHISPPIVTTAFLNHAHHCAY*LSHNYNNLLFSETQVLNHQRNHQTEATHRKCRTQSMW* 253 QHI P+V + L+ A L+ NY+NLL + ++N E+ K +T+ + Sbjct: 123 QHIRSPLVLQSILSLMDRGAMVLTTNYDNLL----EAFGRRQNKPMESLDLKDKTKVL-- 176 Query: 254 GWGEG 268 W G Sbjct: 177 EWARG 181
>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog| Length = 1812 Score = 27.7 bits (60), Expect = 7.7 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Frame = +1 Query: 28 QKPCKVSKSHITKVVATHQSSYSHYRVSQPCTPLRLLT-VPQL*QPAIF*NT---SSESP 195 QK S+ + + + SS H + C P R L P L ++ SESP Sbjct: 1475 QKRNSPSQEELLQPAGSEASSEPHNSTGESCLPRRELEGTPYLGSGISLFSSRDPESESP 1534 Query: 196 KEPPNRGHTP 225 KEP + G TP Sbjct: 1535 KEPAHIGTTP 1544
>NQRA_RHOBA (Q7UWS5) Na(+)-translocating NADH-quinone reductase subunit A (EC| 1.6.5.-) (Na(+)-translocating NQR subunit A) (Na(+)-NQR subunit A) (NQR complex subunit A) (NQR-1 subunit A) Length = 456 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -1 Query: 297 GPHPRHQVGLPSPHPHHIDCV 235 GPHP GLP H HH+D V Sbjct: 222 GPHP---AGLPGTHIHHLDPV 239 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,490,709 Number of Sequences: 219361 Number of extensions: 975842 Number of successful extensions: 2686 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2586 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2683 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
