ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd2j15 |
|---|---|
| Clone Library Name | barley_pub |
>A4_CAEEL (Q10651) Beta-amyloid-like protein precursor| Length = 686 Score = 26.9 bits (58), Expect(2) = 1.4 Identities = 9/19 (47%), Positives = 10/19 (52%) Frame = +1 Query: 100 HTNVHDTCTDYTTWESSAG 156 H N D C DY W+ AG Sbjct: 139 HVNSRDQCNDYQHWKDEAG 157 Score = 23.5 bits (49), Expect(2) = 1.4 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Frame = +2 Query: 200 ISCSHDWIYRT--QQTKPDEDIFDDE 271 + C +D +T Q+TK DED DDE Sbjct: 193 VCCPNDQTNKTDVQKTKEDEDDDDDE 218
>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2| Length = 1484 Score = 30.4 bits (67), Expect = 3.7 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -3 Query: 468 FQSPVWRSPREAMPSHP*HAHQLPGHWEQGP-WQAQEGALGQCQRLRREQ 322 FQ + SP A+P H A Q G ++GP ++ QE LG Q + EQ Sbjct: 1378 FQPRAYSSPVAALPPHHPGATQPNGLSQEGPIYRCQEEGLGHFQAVMMEQ 1427
>RPOC_THEFY (Q47LI6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 30.0 bits (66), Expect = 4.8 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = +3 Query: 306 DRARGVVHDVIADTAQEHPLELAKAPAPND---QAADGHVMDGLA 431 +RAR VV DV+ + EHP+ L +AP + QA + +++G A Sbjct: 477 ERARPVVWDVLEEVISEHPVLLNRAPTLHRLGIQAFEPQLVEGKA 521
>ITPK1_ARATH (Q9SBA5) Inositol-tetrakisphosphate 1-kinase 1 (EC 2.7.1.134)| (Inositol-triphosphate 5/6-kinase 1) (EC 2.7.1.-) (Inositol 1,3,4-trisphosphate 5/6-kinase 1) (AtItpk-1) Length = 319 Score = 30.0 bits (66), Expect = 4.8 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Frame = +3 Query: 381 PAPNDQAADGHVM------DGLA*LLAGISKQDFGNHGNLLLLSYGV-EHVQCFSIRLHP 539 P D +A H M +G+ L A I Q+F NHG ++ Y V +HV+C R P Sbjct: 146 PLDADGSAKSHKMFLIYDQEGMKILKAPIVLQEFVNHGGVIFKVYVVGDHVKCVKRRSLP 205
>RPOC_BLOFL (Q7VRP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 30.0 bits (66), Expect = 4.8 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 306 DRARGVVHDVIADTAQEHPLELAKAP 383 DR VV D++ D +EHP+ L +AP Sbjct: 404 DREESVVWDILEDVIKEHPVMLNRAP 429
>RPOC_STRCO (Q8CJT1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 29.6 bits (65), Expect = 6.3 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = +3 Query: 306 DRARGVVHDVIADTAQEHPLELAKAPAPND---QAADGHVMDGLA 431 +R R VV+DV+ + EHP+ L +AP + QA + +++G A Sbjct: 477 ERGRTVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKA 521
>RPOC_STRAW (Q82DQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 29.6 bits (65), Expect = 6.3 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = +3 Query: 306 DRARGVVHDVIADTAQEHPLELAKAPAPND---QAADGHVMDGLA 431 +R R VV+DV+ + EHP+ L +AP + QA + +++G A Sbjct: 477 ERGRTVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKA 521
>ELP3_ARATH (Q93ZR1) Probable histone acetyltransferase ELO3 (EC 2.3.1.48)| (Protein ELONGATA 3) (Elongator component 3) (Elongation protein 3) Length = 565 Score = 29.6 bits (65), Expect = 6.3 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +3 Query: 96 EAHKRTRHMHRLHNLGIIRGLIVNHYYKQ 182 EA + R HR + +G+I G+ HYY++ Sbjct: 522 EAERIARREHRSNKIGVISGVGTRHYYRK 550
>RPOC_LEUPS (P94899) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 989 Score = 29.6 bits (65), Expect = 6.3 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +3 Query: 306 DRARGVVHDVIADTAQEHPLELAKAP 383 D+A G V DV+ D +EHP+ L +AP Sbjct: 325 DKADGDVMDVLEDVIKEHPVLLNRAP 350
>RPOC_LEUME (P94892) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 989 Score = 29.6 bits (65), Expect = 6.3 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = +3 Query: 306 DRARGVVHDVIADTAQEHPLELAKAP 383 D+A G V DV+ D +EHP+ L +AP Sbjct: 325 DKADGDVMDVLEDVIKEHPVLLNRAP 350
>Y531_METJA (Q57951) Hypothetical protein MJ0531| Length = 170 Score = 29.6 bits (65), Expect = 6.3 Identities = 18/76 (23%), Positives = 34/76 (44%) Frame = -1 Query: 521 ETLDMLNTIAKQKEVAVVSKVLFGDPREKLCQAIHDMPISCLVIXXXXXXXXXXXXXXXV 342 E L + +A++ V + +++L G P ++ + +V+ V Sbjct: 90 EALKKVKKMAEEWGVKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLGSV 149 Query: 341 SDYVVNNAACPVTVVK 294 ++ V+ NA CPV VVK Sbjct: 150 AERVIKNAHCPVLVVK 165
>RPOC_PASMU (Q9CK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 29.3 bits (64), Expect = 8.2 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 306 DRARGVVHDVIADTAQEHPLELAKAP 383 +R +V D++AD +EHP+ L +AP Sbjct: 403 EREDAIVWDILADVIREHPILLNRAP 428 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,728,236 Number of Sequences: 219361 Number of extensions: 1666566 Number of successful extensions: 4323 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4168 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4323 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4757699440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
