>DEGP_BUCAI (P57322) Probable serine protease do-like precursor (EC 3.4.21.-)|
          Length = 478

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 403 PFFPGEVPGIYSETCFFNPSGQYKLPERRXLGSGLMGSPVKG 528
           PF  G  P  +S  C  NP    K  + R LGSG++ +  KG
Sbjct: 85  PFCQGNSPFRHSPFCHINPDSDDKKEKFRALGSGVIINADKG 126

>NEF_HV2G1 (P18038) Nef protein (Negative factor) (F-protein) (3'ORF)|
          Length = 254

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 416 PGKKGRVCFTWLWFVIPPDIMKHS 345
           PG +  +CF WLW ++P D+ + +
Sbjct: 161 PGVRYPMCFGWLWKLVPVDVSQEA 184


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,922,508
Number of Sequences: 219361
Number of extensions: 1526079
Number of successful extensions: 2993
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2993
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)