ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2j06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-a... 31 2.6
2ZN533_BRARE (Q6PBT9) Zinc finger protein 533 30 3.4
3ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 ant... 30 3.4
4LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late en... 30 3.4
5MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP) 30 4.4
6PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (... 30 4.4
7SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in... 30 4.4
8SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in... 30 5.8
9SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in... 30 5.8
10AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Iso... 30 5.8
11AGI3_WHEAT (P10969) Agglutinin isolectin 3 precursor (WGA3) (Fra... 29 7.6
12SINA_DROVI (P29304) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in... 29 7.6
13SYV_WIGBR (Q8D294) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 29 7.6
14AGI1_WHEAT (P10968) Agglutinin isolectin 1 precursor (WGA1) (Iso... 29 7.6
15NEU2_CAVPO (P10769) Vasopressin-neurophysin 2-copeptin precursor... 29 9.9
16TBX18_HUMAN (O95935) T-box transcription factor TBX18 (T-box pro... 29 9.9
17TREZ_ARTRM (Q9AJN6) Malto-oligosyltrehalose trehalohydrolase (EC... 29 9.9
18KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-as... 29 9.9

>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated|
           protein 10.11) (High sulfur keratin-associated protein
           10.11) (Keratin-associated protein 18-11)
           (Keratin-associated protein 18.11)
          Length = 298

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
 Frame = -1

Query: 289 CSDAEGKAWD----PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLP 122
           CS A   +W     P +   P  +     AP PS+      +  P +     C   AC P
Sbjct: 9   CSSAYSDSWQVDDCPESCCEPPCSAPSCCAPAPSLSL----VCTPVSCVSSPCCQAACEP 64

Query: 121 LGETSGIRCYSTTSCCE--TCRG--CVVSPC 41
               SG     T SCC+  +C+   C  SPC
Sbjct: 65  SACQSGCTSSCTPSCCQQSSCQPACCTSSPC 95



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>ZN533_BRARE (Q6PBT9) Zinc finger protein 533|
          Length = 492

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -1

Query: 364 KTLAAKGTAGPAATVTVMYPDK-SGSCSDAEGKAWDPLAL-KIPGSANAGAPAP 209
           KT+ +  T     T T       + SCSD   K+ +PLA  K+P S  A  PAP
Sbjct: 192 KTITSTSTNTTTTTTTTSSCTAVTASCSDQTEKSTEPLAAHKVPASPQAFVPAP 245



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>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)|
          Length = 1822

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 223 GAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRGCVVSP 44
           GAP P  ++         PG+ ++L  + L  LPL     + C+   +CC+ C    + P
Sbjct: 690 GAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKAC--LALLP 747

Query: 43  CICN 32
           C CN
Sbjct: 748 C-CN 750



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>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein|
           18) (Small proline-rich-like epidermal differentiation
           complex protein 5A)
          Length = 118

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
 Frame = +2

Query: 404 EDGGCYGEHHRGSGHVDGLPQHRD-------ERNGGMDCCEPLGGEFLWCAHAT 544
           E GGC   HHR    +   PQ          +++GG  CC   GG    C H++
Sbjct: 63  EGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGS--GCCHSS 114



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>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)|
          Length = 642

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 301 KSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPS 200
           +SG   DA G  + PL    P  A A APAP P+
Sbjct: 277 RSGEAIDALGAHFAPLPAPTPAPAPAPAPAPAPA 310



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>PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)|
           (FGAM synthase) (FGAMS) (Formylglycinamide ribotide
           amidotransferase) (FGARAT) (Formylglycinamide ribotide
           synthetase)
          Length = 1338

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 372 MRSALDPMVCPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTA 500
           ++S LDP V  R+  A   T  V  ++TD   +  +G   W A
Sbjct: 730 VKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAA 772



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>SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia|
           protein)
          Length = 331

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 30/129 (23%), Positives = 46/129 (35%)
 Frame = -1

Query: 445 PRTAMVFTIAASILGQTIGSRAERIRLKTLAAKGTAGPAATVTVMYPDKSGSCSDAEGKA 266
           P  A    +AA + G  +G  A  +        G++    +        +G+ S A   +
Sbjct: 12  PTAAAAAAVAAGV-GGGVGGGASGVATANTNTTGSSSTGGS------SSAGTTSSANTSS 64

Query: 265 WDPLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYST 86
               +L   G  +AG  A   S+         P    Y+    L C   G    + C S 
Sbjct: 65  SSSSSLSSAGGGDAGMSADLTSL------FECPVCFDYVLPPILQCSS-GHLVCVSCRSK 117

Query: 85  TSCCETCRG 59
            +CC TCRG
Sbjct: 118 LTCCPTCRG 126



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>SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia|
           protein)
          Length = 314

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
 Frame = -1

Query: 355 AAKGTAGPAA-TVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWN 179
           A  G  G A  T T      +G+ S A   +    +L   G  +AG  A   S+      
Sbjct: 17  AGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------ 70

Query: 178 LAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 59
              P    Y+    L C   G    + C S  +CC TCRG
Sbjct: 71  FECPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109



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>SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia|
           protein)
          Length = 314

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 1/100 (1%)
 Frame = -1

Query: 355 AAKGTAGPAA-TVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWN 179
           A  G  G A  T T      +G+ S A   +    +L   G  +AG  A   S+      
Sbjct: 17  AGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------ 70

Query: 178 LAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 59
              P    Y+    L C   G    + C S  +CC TCRG
Sbjct: 71  FECPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109



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>AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Isolectin D)|
          Length = 213

 Score = 29.6 bits (65), Expect = 5.8
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
 Frame = -1

Query: 238 GSANAGAPAPTPSMCF*PWNLAAPGTDFYLS-CM*LACL---PLGETSGIRCYSTTSCCE 71
           GS + G   P  ++C   W     G++F    C   AC    P G+ +G R  +   CC 
Sbjct: 117 GSQSGGKLCPN-NLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCS 175

Query: 70  TCRGCVVSPCIC 35
               C + P  C
Sbjct: 176 KWGSCGIGPGYC 187



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>AGI3_WHEAT (P10969) Agglutinin isolectin 3 precursor (WGA3) (Fragment)|
          Length = 186

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
 Frame = -1

Query: 259 PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFY-LSCM*LACL---PLGETSGIRCY 92
           P    I   + AG      ++C   W     G++F    C   AC    P G+ +G R  
Sbjct: 82  PCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVC 141

Query: 91  STTSCCETCRGCVVSPCIC 35
           +   CC     C + P  C
Sbjct: 142 TNNYCCSKWGSCGIGPGYC 160



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>SINA_DROVI (P29304) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia|
           protein)
          Length = 314

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 26/98 (26%), Positives = 36/98 (36%)
 Frame = -1

Query: 352 AKGTAGPAATVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWNLA 173
           A  TA  A   +      +G+ S A   +    +L   G  +AG  A   S+        
Sbjct: 19  AAATAVVATNTSSSTGSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------FE 72

Query: 172 APGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 59
            P    Y+    L C   G    + C S  +CC TCRG
Sbjct: 73  CPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109



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>SYV_WIGBR (Q8D294) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 881

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +1

Query: 133 PITYTINRNQYPGRLNSTVR 192
           PI Y +N+NQYPG   S VR
Sbjct: 436 PIWYDVNKNQYPGISESDVR 455



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>AGI1_WHEAT (P10968) Agglutinin isolectin 1 precursor (WGA1) (Isolectin A)|
          Length = 212

 Score = 29.3 bits (64), Expect = 7.6
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
 Frame = -1

Query: 259 PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLS-CM*LACL---PLGETSGIRCY 92
           P    I   + AG      ++C   W     G++F    C   AC    P G+ +G R  
Sbjct: 108 PCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVC 167

Query: 91  STTSCCETCRGCVVSPCIC 35
           +   CC     C + P  C
Sbjct: 168 TNNYCCSKWGSCGIGPGYC 186



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>NEU2_CAVPO (P10769) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)|
           [Contains: Arg-vasopressin; Neurophysin 2
           (Neurophysin-II); Copeptin]
          Length = 144

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 130 CLPLGETSGIRCYSTTSCCETCRGCVV 50
           CLP G     RC+  + CC    GC V
Sbjct: 22  CLPCGPGGQGRCFGPSICCADALGCFV 48



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>TBX18_HUMAN (O95935) T-box transcription factor TBX18 (T-box protein 18)|
          Length = 607

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = -1

Query: 352 AKGTAGPAATVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWNLA 173
           A  T+GPA +   +    +G C D   +   PLA   PG +  G+PA          +LA
Sbjct: 79  AGATSGPARSGADLERGAAGGCEDGFQQGASPLA--SPGGSPKGSPAR---------SLA 127

Query: 172 APGT 161
            PGT
Sbjct: 128 RPGT 131



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>TREZ_ARTRM (Q9AJN6) Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)|
           (MTHase) (4-alpha-D-((1->4)-alpha-D-glucano)trehalose
           trehalohydrolase) (Maltooligosyl trehalose
           trehalohydrolase)
          Length = 575

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = +2

Query: 368 TDALSPRPDGLPEDGG---CYGEHHRGSG--HVDG 457
           T AL P P G+PE GG    YGE   G+   H+DG
Sbjct: 532 TVALRPGPVGVPEHGGLVLAYGEVRAGAAGLHLDG 566



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>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
           protein 10.8) (High sulfur keratin-associated protein
           10.8) (Keratin-associated protein 18-8)
           (Keratin-associated protein 18.8)
          Length = 259

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = -1

Query: 208 TPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCE--TCRG--CVVSPC 41
           TPS C       AP     L C  ++C P    SG     T SCC+  +C+   C  SPC
Sbjct: 62  TPSCC-------APAPCLALVCAPVSCEPSPCQSGCTDSCTPSCCQQSSCQPACCTSSPC 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,824,946
Number of Sequences: 219361
Number of extensions: 1449024
Number of successful extensions: 4484
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4458
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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