Clone Name | rbasd2j06 |
---|---|
Clone Library Name | barley_pub |
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 30.8 bits (68), Expect = 2.6 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 8/91 (8%) Frame = -1 Query: 289 CSDAEGKAWD----PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLP 122 CS A +W P + P + AP PS+ + P + C AC P Sbjct: 9 CSSAYSDSWQVDDCPESCCEPPCSAPSCCAPAPSLSL----VCTPVSCVSSPCCQAACEP 64 Query: 121 LGETSGIRCYSTTSCCE--TCRG--CVVSPC 41 SG T SCC+ +C+ C SPC Sbjct: 65 SACQSGCTSSCTPSCCQQSSCQPACCTSSPC 95
>ZN533_BRARE (Q6PBT9) Zinc finger protein 533| Length = 492 Score = 30.4 bits (67), Expect = 3.4 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%) Frame = -1 Query: 364 KTLAAKGTAGPAATVTVMYPDK-SGSCSDAEGKAWDPLAL-KIPGSANAGAPAP 209 KT+ + T T T + SCSD K+ +PLA K+P S A PAP Sbjct: 192 KTITSTSTNTTTTTTTTSSCTAVTASCSDQTEKSTEPLAAHKVPASPQAFVPAP 245
>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)| Length = 1822 Score = 30.4 bits (67), Expect = 3.4 Identities = 19/64 (29%), Positives = 30/64 (46%) Frame = -1 Query: 223 GAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRGCVVSP 44 GAP P ++ PG+ ++L + L LPL + C+ +CC+ C + P Sbjct: 690 GAPGPNSTVLVHKKKDCPPGSFWWLIPLLLLLLPLLALLLLLCWKYCACCKAC--LALLP 747 Query: 43 CICN 32 C CN Sbjct: 748 C-CN 750
>LCE5A_HUMAN (Q5TCM9) Late cornified envelope protein 5A (Late envelope protein| 18) (Small proline-rich-like epidermal differentiation complex protein 5A) Length = 118 Score = 30.4 bits (67), Expect = 3.4 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%) Frame = +2 Query: 404 EDGGCYGEHHRGSGHVDGLPQHRD-------ERNGGMDCCEPLGGEFLWCAHAT 544 E GGC HHR + PQ +++GG CC GG C H++ Sbjct: 63 EGGGCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGS--GCCHSS 114
>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)| Length = 642 Score = 30.0 bits (66), Expect = 4.4 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -1 Query: 301 KSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPS 200 +SG DA G + PL P A A APAP P+ Sbjct: 277 RSGEAIDALGAHFAPLPAPTPAPAPAPAPAPAPA 310
>PUR4_HUMAN (O15067) Phosphoribosylformylglycinamidine synthase (EC 6.3.5.3)| (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1338 Score = 30.0 bits (66), Expect = 4.4 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = +3 Query: 372 MRSALDPMVCPRMEAAMVNTIAVLGMLTDFLSIAMNGTAAWTA 500 ++S LDP V R+ A T V ++TD + +G W A Sbjct: 730 VKSLLDPKVAARLAVAEALTNLVFALVTDLRDVKCSGNWMWAA 772
>SINA_DROWI (Q8I147) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 331 Score = 30.0 bits (66), Expect = 4.4 Identities = 30/129 (23%), Positives = 46/129 (35%) Frame = -1 Query: 445 PRTAMVFTIAASILGQTIGSRAERIRLKTLAAKGTAGPAATVTVMYPDKSGSCSDAEGKA 266 P A +AA + G +G A + G++ + +G+ S A + Sbjct: 12 PTAAAAAAVAAGV-GGGVGGGASGVATANTNTTGSSSTGGS------SSAGTTSSANTSS 64 Query: 265 WDPLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYST 86 +L G +AG A S+ P Y+ L C G + C S Sbjct: 65 SSSSSLSSAGGGDAGMSADLTSL------FECPVCFDYVLPPILQCSS-GHLVCVSCRSK 117 Query: 85 TSCCETCRG 59 +CC TCRG Sbjct: 118 LTCCPTCRG 126
>SINA_DROME (P21461) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 29.6 bits (65), Expect = 5.8 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Frame = -1 Query: 355 AAKGTAGPAA-TVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWN 179 A G G A T T +G+ S A + +L G +AG A S+ Sbjct: 17 AGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------ 70 Query: 178 LAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 59 P Y+ L C G + C S +CC TCRG Sbjct: 71 FECPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109
>SINA_DROER (P61093) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 29.6 bits (65), Expect = 5.8 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Frame = -1 Query: 355 AAKGTAGPAA-TVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWN 179 A G G A T T +G+ S A + +L G +AG A S+ Sbjct: 17 AGAGATGVATNTSTSTGSSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------ 70 Query: 178 LAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 59 P Y+ L C G + C S +CC TCRG Sbjct: 71 FECPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109
>AGI2_WHEAT (P02876) Agglutinin isolectin 2 precursor (WGA2) (Isolectin D)| Length = 213 Score = 29.6 bits (65), Expect = 5.8 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 4/72 (5%) Frame = -1 Query: 238 GSANAGAPAPTPSMCF*PWNLAAPGTDFYLS-CM*LACL---PLGETSGIRCYSTTSCCE 71 GS + G P ++C W G++F C AC P G+ +G R + CC Sbjct: 117 GSQSGGKLCPN-NLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVCTNNYCCS 175 Query: 70 TCRGCVVSPCIC 35 C + P C Sbjct: 176 KWGSCGIGPGYC 187
>AGI3_WHEAT (P10969) Agglutinin isolectin 3 precursor (WGA3) (Fragment)| Length = 186 Score = 29.3 bits (64), Expect = 7.6 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%) Frame = -1 Query: 259 PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFY-LSCM*LACL---PLGETSGIRCY 92 P I + AG ++C W G++F C AC P G+ +G R Sbjct: 82 PCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVC 141 Query: 91 STTSCCETCRGCVVSPCIC 35 + CC C + P C Sbjct: 142 TNNYCCSKWGSCGIGPGYC 160
>SINA_DROVI (P29304) Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia| protein) Length = 314 Score = 29.3 bits (64), Expect = 7.6 Identities = 26/98 (26%), Positives = 36/98 (36%) Frame = -1 Query: 352 AKGTAGPAATVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWNLA 173 A TA A + +G+ S A + +L G +AG A S+ Sbjct: 19 AAATAVVATNTSSSTGSSAGNTSSANTSSSSSSSLSSAGGGDAGMSADLTSL------FE 72 Query: 172 APGTDFYLSCM*LACLPLGETSGIRCYSTTSCCETCRG 59 P Y+ L C G + C S +CC TCRG Sbjct: 73 CPVCFDYVLPPILQCSS-GHLVCVSCRSKLTCCPTCRG 109
>SYV_WIGBR (Q8D294) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 881 Score = 29.3 bits (64), Expect = 7.6 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = +1 Query: 133 PITYTINRNQYPGRLNSTVR 192 PI Y +N+NQYPG S VR Sbjct: 436 PIWYDVNKNQYPGISESDVR 455
>AGI1_WHEAT (P10968) Agglutinin isolectin 1 precursor (WGA1) (Isolectin A)| Length = 212 Score = 29.3 bits (64), Expect = 7.6 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%) Frame = -1 Query: 259 PLALKIPGSANAGAPAPTPSMCF*PWNLAAPGTDFYLS-CM*LACL---PLGETSGIRCY 92 P I + AG ++C W G++F C AC P G+ +G R Sbjct: 108 PCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKDAGGRVC 167 Query: 91 STTSCCETCRGCVVSPCIC 35 + CC C + P C Sbjct: 168 TNNYCCSKWGSCGIGPGYC 186
>NEU2_CAVPO (P10769) Vasopressin-neurophysin 2-copeptin precursor (AVP-NPII)| [Contains: Arg-vasopressin; Neurophysin 2 (Neurophysin-II); Copeptin] Length = 144 Score = 28.9 bits (63), Expect = 9.9 Identities = 11/27 (40%), Positives = 13/27 (48%) Frame = -1 Query: 130 CLPLGETSGIRCYSTTSCCETCRGCVV 50 CLP G RC+ + CC GC V Sbjct: 22 CLPCGPGGQGRCFGPSICCADALGCFV 48
>TBX18_HUMAN (O95935) T-box transcription factor TBX18 (T-box protein 18)| Length = 607 Score = 28.9 bits (63), Expect = 9.9 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = -1 Query: 352 AKGTAGPAATVTVMYPDKSGSCSDAEGKAWDPLALKIPGSANAGAPAPTPSMCF*PWNLA 173 A T+GPA + + +G C D + PLA PG + G+PA +LA Sbjct: 79 AGATSGPARSGADLERGAAGGCEDGFQQGASPLA--SPGGSPKGSPAR---------SLA 127 Query: 172 APGT 161 PGT Sbjct: 128 RPGT 131
>TREZ_ARTRM (Q9AJN6) Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)| (MTHase) (4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase) (Maltooligosyl trehalose trehalohydrolase) Length = 575 Score = 28.9 bits (63), Expect = 9.9 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 5/35 (14%) Frame = +2 Query: 368 TDALSPRPDGLPEDGG---CYGEHHRGSG--HVDG 457 T AL P P G+PE GG YGE G+ H+DG Sbjct: 532 TVALRPGPVGVPEHGGLVLAYGEVRAGAAGLHLDG 566
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated| protein 10.8) (High sulfur keratin-associated protein 10.8) (Keratin-associated protein 18-8) (Keratin-associated protein 18.8) Length = 259 Score = 28.9 bits (63), Expect = 9.9 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Frame = -1 Query: 208 TPSMCF*PWNLAAPGTDFYLSCM*LACLPLGETSGIRCYSTTSCCE--TCRG--CVVSPC 41 TPS C AP L C ++C P SG T SCC+ +C+ C SPC Sbjct: 62 TPSCC-------APAPCLALVCAPVSCEPSPCQSGCTDSCTPSCCQQSSCQPACCTSSPC 114 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,824,946 Number of Sequences: 219361 Number of extensions: 1449024 Number of successful extensions: 4484 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4458 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)