ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2j06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_550510.1| Oryza sativa (japonica cultivar-group), mRNA 161 3e-36
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
3emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5) 161 3e-36
4dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
5dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
6gb|AF192975.1|AF192975 Oryza sativa unknown gene 161 3e-36
7dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
8ref|XM_476693.1| Oryza sativa (japonica cultivar-group), mRNA 159 1e-35
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
10dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
11dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 159 1e-35
12dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
13gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, comple... 133 7e-28
14gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Canc... 42 1.9
15gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D1... 42 1.9
16gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, co... 40 7.4
17gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.4
18gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 7.4
19gb|AC102462.19| Mus musculus chromosome 1, clone RP24-327F2, com... 40 7.4
20gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete... 40 7.4
21gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence 40 7.4
22emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chro... 40 7.4

>ref|XM_550510.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1116

 Score =  161 bits (81), Expect = 3e-36
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                       
Query: 347 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 406
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 957 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 898

                                                                       
Query: 407 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 466
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 897 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 838

                                                                       
Query: 467 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 526
           |||  | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||| |
Sbjct: 837 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttc-t 779

                                
Query: 527 tggtgtgctcacgccacaccc 547
           |||||||||||||||||||||
Sbjct: 778 tggtgtgctcacgccacaccc 758



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 243  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 302
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 1058 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 999

                        
Query: 303  tctggatacatg 314
            | ||||||||||
Sbjct: 998  tttggatacatg 987



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  161 bits (81), Expect = 3e-36
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Plus

                                                                          
Query: 347    ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 406
              ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 876372 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 876431

                                                                          
Query: 407    gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 466
               ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 876432 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 876491

                                                                          
Query: 467    catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 526
              |||  | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||| |
Sbjct: 876492 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttc-t 876550

                                   
Query: 527    tggtgtgctcacgccacaccc 547
              |||||||||||||||||||||
Sbjct: 876551 tggtgtgctcacgccacaccc 876571



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                          
Query: 243    atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 302
              ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 876271 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 876330

                          
Query: 303    tctggatacatg 314
              | ||||||||||
Sbjct: 876331 tttggatacatg 876342



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 99     cttattccacttgtctcaccc 119
              |||||||||||||||||||||
Sbjct: 876066 cttattccacttgtctcaccc 876086



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>emb|AJ315902.1|OSA315902 Oryza sativa DNA, clone F10 (C5)
          Length = 11618

 Score =  161 bits (81), Expect = 3e-36
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Plus

                                                                        
Query: 347  ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 406
            ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 8460 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 8519

                                                                        
Query: 407  gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 466
             ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 8520 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 8579

                                                                        
Query: 467  catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 526
            |||  | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||| |
Sbjct: 8580 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttc-t 8638

                                 
Query: 527  tggtgtgctcacgccacaccc 547
            |||||||||||||||||||||
Sbjct: 8639 tggtgtgctcacgccacaccc 8659



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                        
Query: 243  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 302
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 8359 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 8418

                        
Query: 303  tctggatacatg 314
            | ||||||||||
Sbjct: 8419 tttggatacatg 8430



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 99   cttattccacttgtctcaccc 119
            |||||||||||||||||||||
Sbjct: 8154 cttattccacttgtctcaccc 8174



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>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0019F11
          Length = 123673

 Score =  161 bits (81), Expect = 3e-36
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Plus

                                                                         
Query: 347   ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 406
             ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 57267 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 57326

                                                                         
Query: 407   gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 466
              ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 57327 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 57386

                                                                         
Query: 467   catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 526
             |||  | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||| |
Sbjct: 57387 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttc-t 57445

                                  
Query: 527   tggtgtgctcacgccacaccc 547
             |||||||||||||||||||||
Sbjct: 57446 tggtgtgctcacgccacaccc 57466



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                         
Query: 243   atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 302
             ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 57166 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 57225

                         
Query: 303   tctggatacatg 314
             | ||||||||||
Sbjct: 57226 tttggatacatg 57237



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 99    cttattccacttgtctcaccc 119
             |||||||||||||||||||||
Sbjct: 56961 cttattccacttgtctcaccc 56981



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>dbj|AK069560.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020P18, full
            insert sequence
          Length = 3418

 Score =  161 bits (81), Expect = 3e-36
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                        
Query: 347  ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 406
            ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 3071 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 3012

                                                                        
Query: 407  gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 466
             ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 3011 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 2952

                                                                        
Query: 467  catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 526
            |||  | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||| |
Sbjct: 2951 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttc-t 2893

                                 
Query: 527  tggtgtgctcacgccacaccc 547
            |||||||||||||||||||||
Sbjct: 2892 tggtgtgctcacgccacaccc 2872



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                        
Query: 243  atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 302
            ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 3172 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 3113

                        
Query: 303  tctggatacatg 314
            | ||||||||||
Sbjct: 3112 tttggatacatg 3101



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 99   cttattccacttgtctcaccc 119
            |||||||||||||||||||||
Sbjct: 3377 cttattccacttgtctcaccc 3357



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>gb|AF192975.1|AF192975 Oryza sativa unknown gene
          Length = 673

 Score =  161 bits (81), Expect = 3e-36
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                       
Query: 347 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 406
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 239 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 180

                                                                       
Query: 407 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 466
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 179 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 120

                                                                       
Query: 467 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 526
           |||  | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||| |
Sbjct: 119 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttc-t 61

                                
Query: 527 tggtgtgctcacgccacaccc 547
           |||||||||||||||||||||
Sbjct: 60  tggtgtgctcacgccacaccc 40



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 243 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgca 289
           ||||||| ||| || |||||||| ||||||||||||| ||| |||||
Sbjct: 340 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgca 294



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>dbj|AK062240.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E07, full
           insert sequence
          Length = 1116

 Score =  161 bits (81), Expect = 3e-36
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                       
Query: 347 ctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccgag 406
           ||||||||| || | ||||||||| |||||||| ||||| |||||||| || || || | 
Sbjct: 693 ctttgcagccagtgccttcagacgaatgcgctccgccctcgacccgattgtctgaccaac 634

                                                                       
Query: 407 gatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctcag 466
            ||||||||||||||||||||  |||| || ||  ||||||||||||| || ||||||||
Sbjct: 633 aatggaggctgctatggtgaatgccatggcagtcttgggcatgttgacagatttcctcag 574

                                                                       
Query: 467 catcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttctt 526
           |||  | ||||| ||||| ||||||||||| ||||| |||||||| |||||||||||| |
Sbjct: 573 cattccaatgaatggaacagcggcatggacagctgcaaaccactgaggggagaatttc-t 515

                                
Query: 527 tggtgtgctcacgccacaccc 547
           |||||||||||||||||||||
Sbjct: 514 tggtgtgctcacgccacaccc 494



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 243 atcttcagcgcaagaggatcccacgccttgccctcggcgtcgctgcagctgccgctcttg 302
           ||||||| ||| || |||||||| ||||||||||||| ||| |||||  | ||  |||||
Sbjct: 794 atcttcatcgcgagcggatcccatgccttgccctcggtgtcactgcaatttccagtcttg 735

                       
Query: 303 tctggatacatg 314
           | ||||||||||
Sbjct: 734 tttggatacatg 723



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 99  cttattccacttgtctcaccc 119
           |||||||||||||||||||||
Sbjct: 999 cttattccacttgtctcaccc 979



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>ref|XM_476693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1700

 Score =  159 bits (80), Expect = 1e-35
 Identities = 174/204 (85%), Gaps = 1/204 (0%)
 Strand = Plus / Minus

                                                                        
Query: 344  gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 403
            |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 1290 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1231

                                                                        
Query: 404  gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 463
             |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 1230 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1171

                                                                        
Query: 464  cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 523
            ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 1170 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 1111

                                    
Query: 524  ctttggtgtgctcacgccacaccc 547
            | ||||||||||||||||||||||
Sbjct: 1110 c-ttggtgtgctcacgccacaccc 1088



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  159 bits (80), Expect = 1e-35
 Identities = 174/204 (85%), Gaps = 1/204 (0%)
 Strand = Plus / Plus

                                                                           
Query: 344     gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 403
               |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 3215904 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 3215963

                                                                           
Query: 404     gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 463
                |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 3215964 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 3216023

                                                                           
Query: 464     cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 523
               ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 3216024 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 3216083

                                       
Query: 524     ctttggtgtgctcacgccacaccc 547
               | ||||||||||||||||||||||
Sbjct: 3216084 c-ttggtgtgctcacgccacaccc 3216106



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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score =  159 bits (80), Expect = 1e-35
 Identities = 174/204 (85%), Gaps = 1/204 (0%)
 Strand = Plus / Plus

                                                                          
Query: 344    gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 403
              |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 130894 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 130953

                                                                          
Query: 404    gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 463
               |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 130954 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 131013

                                                                          
Query: 464    cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 523
              ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 131014 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 131073

                                      
Query: 524    ctttggtgtgctcacgccacaccc 547
              | ||||||||||||||||||||||
Sbjct: 131074 c-ttggtgtgctcacgccacaccc 131096



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>dbj|AK065419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013021B09, full
            insert sequence
          Length = 1699

 Score =  159 bits (80), Expect = 1e-35
 Identities = 174/204 (85%), Gaps = 1/204 (0%)
 Strand = Plus / Minus

                                                                        
Query: 344  gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 403
            |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 1289 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 1230

                                                                        
Query: 404  gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 463
             |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 1229 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 1170

                                                                        
Query: 464  cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 523
            ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 1169 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 1110

                                    
Query: 524  ctttggtgtgctcacgccacaccc 547
            | ||||||||||||||||||||||
Sbjct: 1109 c-ttggtgtgctcacgccacaccc 1087



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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score =  159 bits (80), Expect = 1e-35
 Identities = 174/204 (85%), Gaps = 1/204 (0%)
 Strand = Plus / Plus

                                                                         
Query: 344   gccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgccc 403
             |||||||||||| |  | ||||||||| |||||||| ||||| |||||||| || || ||
Sbjct: 25597 gccctttgcagccaatgccttcagacgaatgcgctcggccctcgacccgattgtctggcc 25656

                                                                         
Query: 404   gaggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcct 463
              |  ||||||||||||||||||||  |||| || ||  |||||||||| || || |||||
Sbjct: 25657 aataatggaggctgctatggtgaatgccatggcagtcttgggcatgttcacagatttcct 25716

                                                                         
Query: 464   cagcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaattt 523
             ||||||  ||||||| ||||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct: 25717 cagcattccgatgaatggaacagcggcatggacagctgcaaaccactgcggggagaattt 25776

                                     
Query: 524   ctttggtgtgctcacgccacaccc 547
             | ||||||||||||||||||||||
Sbjct: 25777 c-ttggtgtgctcacgccacaccc 25799



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>gb|AY596575.1| Saccharum officinarum clone SCCCLR1067F01, complete sequence
          Length = 1457

 Score =  133 bits (67), Expect = 7e-28
 Identities = 170/203 (83%), Gaps = 1/203 (0%)
 Strand = Plus / Minus

                                                                        
Query: 345  ccctttgcagcaagagtcttcagacggatgcgctcagccctagacccgatggtttgcccg 404
            |||||||||||  || || | |||||||||||||| ||||| ||||| || || || || 
Sbjct: 1028 ccctttgcagcctgattccttagacggatgcgctcggcccttgacccaatagtctggcca 969

                                                                        
Query: 405  aggatggaggctgctatggtgaacaccatcgcggttctgggcatgttgacggacttcctc 464
            |  ||||||||||||||||||||  ||||||| || ||||||||    || |||||||||
Sbjct: 968  acaatggaggctgctatggtgaatgccatcgcagtcctgggcatcacaacagacttcctc 909

                                                                        
Query: 465  agcatcgcgatgaacggaacggcggcatggactgctgcgaaccactggggggagaatttc 524
            ||||| || ||||||||||| ||||||||||| ||||| |||||||| || ||||| |||
Sbjct: 908  agcattgcaatgaacggaacagcggcatggacagctgcaaaccactgaggagagaacttc 849

                                   
Query: 525  tttggtgtgctcacgccacaccc 547
             ||||||||||| ||||||||||
Sbjct: 848  -ttggtgtgctcccgccacaccc 827



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>gb|AC068631.16| Homo sapiens 3 BAC RP11-134F2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167137

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 234    gagccaggtatcttcagcgca 254
              |||||||||||||||||||||
Sbjct: 138713 gagccaggtatcttcagcgca 138693



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>gb|AC010251.3|AC010251 Homo sapiens chromosome 5 clone CTC-426D19, complete sequence
          Length = 175191

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 71     ttcacagcaggacgtggtact 91
              |||||||||||||||||||||
Sbjct: 159317 ttcacagcaggacgtggtact 159337



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>gb|AC116375.11| Mus musculus chromosome 5, clone RP24-197K18, complete sequence
          Length = 150306

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     atgcatggactgacaacaca 58
              ||||||||||||||||||||
Sbjct: 115683 atgcatggactgacaacaca 115664



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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 207     gtcggtgcaggagcgccggc 226
               ||||||||||||||||||||
Sbjct: 2881007 gtcggtgcaggagcgccggc 2881026



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 464    cagcatcgcgatgaacggaa 483
              ||||||||||||||||||||
Sbjct: 159362 cagcatcgcgatgaacggaa 159343



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>gb|AC102462.19| Mus musculus chromosome 1, clone RP24-327F2, complete sequence
          Length = 141794

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 512   gggggagaatttctttggtg 531
             ||||||||||||||||||||
Sbjct: 48045 gggggagaatttctttggtg 48064



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>gb|AC148877.2| Chlamydomonas reinhardtii clone cr-11B1, complete sequence
          Length = 52591

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 317   ggtgactgtggcggcgggaccggcggtg 344
             |||| |||||||||||||| ||||||||
Sbjct: 30448 ggtggctgtggcggcgggagcggcggtg 30475



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>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence
          Length = 317137

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    cacaaccacgacaagtttca 74
             ||||||||||||||||||||
Sbjct: 49823 cacaaccacgacaagtttca 49804



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>emb|CT025583.7| Mouse DNA sequence from clone RP24-68O11 on chromosome 14, complete
              sequence
          Length = 201727

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 403    cgaggatggaggctgctatg 422
              ||||||||||||||||||||
Sbjct: 162615 cgaggatggaggctgctatg 162596


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,389,613
Number of Sequences: 3902068
Number of extensions: 3389613
Number of successful extensions: 55539
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55382
Number of HSP's gapped (non-prelim): 142
length of query: 547
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 524
effective length of database: 17,143,297,704
effective search space: 8983087996896
effective search space used: 8983087996896
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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