ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd2j05 |
|---|---|
| Clone Library Name | barley_pub |
>CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 751 Score = 158 bits (399), Expect = 2e-38 Identities = 77/151 (50%), Positives = 97/151 (64%) Frame = -1 Query: 612 DHLYNLQMLEAAYHRLPQPKDSERAKTYIPRHPSVTPASYPQIQAPIVTNPAFWERLGSD 433 + LY M EAA+H +P P DSER + Y+PR+P TP + Q+ P F++RL Sbjct: 608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRL--- 664 Query: 432 TLSTDMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSY 253 ST+ LFF FYY + + QYLAAK LKKQSWRFH KY WFQRH EP+ TDE+E+G+Y Sbjct: 665 --STETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 722 Query: 252 VYFDFHLADDGNGWCQRIKNDFTFEYNFLED 160 +YFD+ W QR K FTFEY +LED Sbjct: 723 IYFDY------EKWGQRKKEGFTFEYRYLED 747
>CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 753 Score = 158 bits (399), Expect = 2e-38 Identities = 77/151 (50%), Positives = 97/151 (64%) Frame = -1 Query: 612 DHLYNLQMLEAAYHRLPQPKDSERAKTYIPRHPSVTPASYPQIQAPIVTNPAFWERLGSD 433 + LY M EAA+H +P P DSER + Y+PR+P TP + Q+ P F++RL Sbjct: 610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRL--- 666 Query: 432 TLSTDMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSY 253 ST+ LFF FYY + + QYLAAK LKKQSWRFH KY WFQRH EP+ TDE+E+G+Y Sbjct: 667 --STETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTY 724 Query: 252 VYFDFHLADDGNGWCQRIKNDFTFEYNFLED 160 +YFD+ W QR K FTFEY +LED Sbjct: 725 IYFDY------EKWGQRKKEGFTFEYRYLED 749
>CNOT2_MOUSE (Q8C5L3) CCR4-NOT transcription complex subunit 2 (CCR4-associated| factor 2) Length = 540 Score = 60.1 bits (144), Expect = 7e-09 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Frame = -1 Query: 420 DMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQR--HVEPQVTTDEYERGSYVY 247 D+LF+ +Y Q LAA EL + WR+H++ W R +EP + T+ YERG+Y + Sbjct: 442 DLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYF 501 Query: 246 FDFHLADDGNGWCQRIKNDFTFEYNFLED 160 FD W +++ +F EY+ LE+ Sbjct: 502 FDC------LNW-RKVAKEFHLEYDKLEE 523
>CNOT2_HUMAN (Q9NZN8) CCR4-NOT transcription complex subunit 2 (CCR4-associated| factor 2) Length = 540 Score = 60.1 bits (144), Expect = 7e-09 Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Frame = -1 Query: 420 DMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQR--HVEPQVTTDEYERGSYVY 247 D+LF+ +Y Q LAA EL + WR+H++ W R +EP + T+ YERG+Y + Sbjct: 442 DLLFYLYYMNGGDVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYF 501 Query: 246 FDFHLADDGNGWCQRIKNDFTFEYNFLED 160 FD W +++ +F EY+ LE+ Sbjct: 502 FDC------LNW-RKVAKEFHLEYDKLEE 523
>NOT5_YEAST (Q12514) General negative regulator of transcription subunit 5| Length = 560 Score = 53.9 bits (128), Expect = 5e-07 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 5/85 (5%) Frame = -1 Query: 420 DMLFFAFYYQQNSYQQYLAAKEL-KKQSWRFHRKYNTWFQRHVE---PQVTTDEYERGSY 253 D LFF FY+ Q SY+Q+LAA+EL K ++W F++ W+ + +E P + E E S+ Sbjct: 475 DTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKEIEKLPPGMGKSEEE--SW 532 Query: 252 VYFDFHLADDGNGW-CQRIKNDFTF 181 YFD+ W +R NDF + Sbjct: 533 RYFDYK-----KSWLARRCGNDFVY 552
>NOT2_YEAST (P06100) General negative regulator of transcription subunit 2| Length = 191 Score = 53.5 bits (127), Expect = 6e-07 Identities = 40/123 (32%), Positives = 58/123 (47%), Gaps = 11/123 (8%) Frame = -1 Query: 507 TPASY---PQIQAPIVTNPAFWERLGSDT-----LSTDMLFFAFYYQQNSYQQYLAAKEL 352 TP S+ P + VT P F + +D + LFF FY + Q L EL Sbjct: 74 TPESFTNIPGVLQSTVTPPCF-NSIQNDQQRVALFQDETLFFLFYKHPGTVIQELTYLEL 132 Query: 351 KKQSWRFHRKYNTWFQRH--VEPQVTTDEY-ERGSYVYFDFHLADDGNGWCQRIKNDFTF 181 +K++WR+H+ W + +EP V+ D ERGSYV+F D W ++ + DF Sbjct: 133 RKRNWRYHKTLKAWLTKDPMMEPIVSADGLSERGSYVFF------DPQRW-EKCQRDFLL 185 Query: 180 EYN 172 YN Sbjct: 186 FYN 188
>RGA_DROME (Q94547) Regulator of gene activity (Protein regena)| Length = 585 Score = 47.4 bits (111), Expect = 5e-05 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = -1 Query: 429 LSTDMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQR--HVEPQVTTDEYERGS 256 L D+LFF FY Q +AA EL + WR+H + W R ++ ERG+ Sbjct: 488 LQEDLLFFLFYTNIGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGT 547 Query: 255 YVYFD 241 + YFD Sbjct: 548 FYYFD 552
>NOT3_YEAST (P06102) General negative regulator of transcription subunit 3| Length = 836 Score = 39.7 bits (91), Expect = 0.010 Identities = 25/90 (27%), Positives = 41/90 (45%) Frame = -1 Query: 432 TLSTDMLFFAFYYQQNSYQQYLAAKELKKQSWRFHRKYNTWFQRHVEPQVTTDEYERGSY 253 TL LF+ +Y+ ++ +A K L ++ W+ + WF R E + + E G Y Sbjct: 702 TLEMFSLFYNYYFAITPLEREIAYKILNERDWKVSKDGTMWFLRQGEVKFFNEICEVGDY 761 Query: 252 VYFDFHLADDGNGWCQRIKNDFTFEYNFLE 163 F DD W K +F +Y+FL+ Sbjct: 762 KIFKL---DD---WTVIDKINFRLDYSFLQ 785
>LEPA_XYLFT (Q87C09) GTP-binding protein lepA| Length = 602 Score = 31.2 bits (69), Expect = 3.4 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = -1 Query: 654 IGDNLSGASVVSGHDHLYNLQMLEAAYHRL--PQPKDSERAKTYI 526 IG + S A VS LY Q+LEA R+ PQP+D+E+ + I Sbjct: 156 IGIDASEAVAVSAKTGLYVEQVLEAIVQRIPAPQPRDTEKLQALI 200
>LEPA_XYLFA (Q9PBA1) GTP-binding protein lepA| Length = 602 Score = 31.2 bits (69), Expect = 3.4 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Frame = -1 Query: 654 IGDNLSGASVVSGHDHLYNLQMLEAAYHRL--PQPKDSERAKTYI 526 IG + S A VS LY Q+LEA R+ PQP+D+E+ + I Sbjct: 156 IGIDASEAVAVSAKTGLYVEQVLEAIVQRIPAPQPRDTEKLQALI 200
>KP58_DROME (Q9VPC0) Serine/threonine-protein kinase PITSLRE (EC 2.7.11.22)| (Cell division cycle 2-like) Length = 952 Score = 31.2 bits (69), Expect = 3.4 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Frame = -1 Query: 648 DNLSGASVVSGHDHLYNLQMLEAAYHRLPQPKDSERAKTYIPRHPSVT---PASYPQIQA 478 D++ GA++ DH Y+ + E YH + + S A Y H P Q Q Sbjct: 69 DDVGGAALALERDHRYDYRSREEHYHHHQRERSSNAAAAYAKHHLGHAYHYPQPPQQQQQ 128 Query: 477 PIVTNPAF 454 P+ P++ Sbjct: 129 PLPPAPSY 136
>RMT2_NEUCR (Q7SCW9) Arginine N-methyltransferase 2 (EC 2.1.1.-)| Length = 429 Score = 30.0 bits (66), Expect = 7.6 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Frame = -1 Query: 300 HVEPQVTTDEYERGSYVYFDFHLADD-GNG 214 ++E QVT+D+Y R + Y D L DD GNG Sbjct: 189 NLEEQVTSDKYLRSTVAYSDGKLVDDAGNG 218
>Y568_RICPR (Q9ZCY3) Hypothetical protein RP568| Length = 129 Score = 29.6 bits (65), Expect = 9.9 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Frame = +1 Query: 22 IXHKVTTYNWGICSRFQQFHSENYMSRN*ANIF-------LSPSALVWLY*QFILKEVVF 180 I +V+T N+ + S +Q +SEN N NI L P+ L L ++ E+V Sbjct: 24 IKDRVSTLNYQLRSVIKQINSEN----NNINILKAEQAYLLLPTRLEKLAAAYLKLEIVK 79 Query: 181 KCEVVLDPLAPPI 219 +++ DPLAP I Sbjct: 80 SYQMINDPLAPNI 92
>MSRA_XANCP (Q8PCA6) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 216 Score = 29.6 bits (65), Expect = 9.9 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 5/47 (10%) Frame = -1 Query: 489 QIQAPIVTNPAFWERL---GSDTLSTDMLFFA--FYYQQNSYQQYLA 364 Q A I + A+ ++L G ++T++L+ A FYY ++ +QQYLA Sbjct: 148 QYDAAIASRDAYQQQLTAAGYGDITTEILYPAPTFYYAEDDHQQYLA 194
>CTR4_HUMAN (O43246) Cationic amino acid transporter 4 (CAT-4) (CAT4)| Length = 635 Score = 29.6 bits (65), Expect = 9.9 Identities = 18/52 (34%), Positives = 23/52 (44%) Frame = +2 Query: 173 LYSNVKSFLILWHHPFPSSAR*KSKYTYDPRSYSSVVTCGSTCRWNQVLYFL 328 L S V + ++ WH P SA + Y R +V GS C N VL L Sbjct: 285 LVSTVLTLMVPWHSLDPDSALADAFYQRGYRWAGFIVAAGSICAMNTVLLSL 336 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 108,077,561 Number of Sequences: 219361 Number of extensions: 2352447 Number of successful extensions: 6030 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5816 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6019 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7479594804 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
