ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2j03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CTND2_MOUSE (O35927) Catenin delta-2 (Neural plakophilin-related... 30 3.9
2CSCA_ECOLI (P40714) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) ... 29 8.6

>CTND2_MOUSE (O35927) Catenin delta-2 (Neural plakophilin-related ARM-repeat|
           protein) (NPRAP) (Neurojungin)
          Length = 1247

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 536 PPSTPFLPHVSTNFDLCTSPPHHSLLHM*SNPLPCHP 426
           PP  PF P + + F L  +PP  + L+  S+ LP  P
Sbjct: 224 PPREPFAPSLGSAFHLPDAPPAAAALYYSSSTLPAPP 260



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>CSCA_ECOLI (P40714) Sucrose-6-phosphate hydrolase (EC 3.2.1.26) (Sucrase)|
           (Invertase)
          Length = 477

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +1

Query: 16  RSTHEANKXKQQHLLIRWNTTSSKV*TTSQADITYKETV*LKLRCSLTTKETSN*IYWKL 195
           R  HEA   +QQH  I   T S+K      A     + V ++L+ +L   +  +    +L
Sbjct: 329 RPVHEAESLRQQHQSISPRTISNKYVLQENA-----QAVEIQLQWALKNSDAEH-YGLQL 382

Query: 196 GSEHQRYVRHE----VHWRSQPYYGLSARRSL 279
           G+  + Y+ ++    V WR  P+  L   RS+
Sbjct: 383 GAGMRLYIDNQSERLVLWRYYPHENLDGYRSI 414


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,500,093
Number of Sequences: 219361
Number of extensions: 2165992
Number of successful extensions: 5028
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5026
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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