ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2j01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
2dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
3dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
4dbj|AK060239.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
5gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece 82 2e-12
6gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC... 76 1e-10
7ref|NM_116336.2| Arabidopsis thaliana DNA binding / transcriptio... 52 0.002
8ref|NM_001036490.1| Arabidopsis thaliana DNA binding / transcrip... 52 0.002
9ref|NM_202764.1| Arabidopsis thaliana DNA binding / transcriptio... 52 0.002
10gb|AY519522.1| Arabidopsis thaliana MYB transcription factor (At... 52 0.002
11emb|BX828755.1|CNS0A2LX Arabidopsis thaliana Full-length cDNA Co... 52 0.002
12gb|BT005611.1| Arabidopsis thaliana clone U50786 putative myb fa... 52 0.002
13dbj|AK118043.1| Arabidopsis thaliana mRNA for unknown protein, c... 52 0.002
14emb|BX826597.1|CNS0A37B Arabidopsis thaliana Full-length cDNA Co... 48 0.027
15gb|AC104203.11| Mus musculus chromosome 5, clone RP24-301M6, com... 44 0.42
16emb|AL161491.2|ATCHRIV3 Arabidopsis thaliana DNA chromosome 4, c... 44 0.42
17gb|AF007269.1|IG002N01 Arabidopsis thaliana BAC IG002N01 44 0.42
18ref|NM_025729.3| Mus musculus RIKEN cDNA 4921526G09 gene (492152... 42 1.7
19ref|XM_390467.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 42 1.7
20gb|AC158747.3| Mus musculus chromosome 15, clone RP24-248P22, co... 42 1.7
21dbj|AK220185.1| Mus musculus mRNA for mKIAA4135 protein 42 1.7
22emb|BX470157.6| Zebrafish DNA sequence from clone CH211-119P14 i... 42 1.7
23emb|BX530085.3| Zebrafish DNA sequence from clone DKEY-18A21 in ... 42 1.7
24ref|XM_696979.1| PREDICTED: Danio rerio hypothetical protein LOC... 42 1.7
25dbj|AK041800.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 42 1.7
26dbj|AK048222.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 1.7
27gb|BC044423.1| Danio rerio Nedd4 family interacting protein 1, m... 42 1.7
28gb|AC105969.17| Mus musculus chromosome 15, clone RP23-477B23, c... 42 1.7
29ref|NM_199666.1| Danio rerio Nedd4 family interacting protein 1 ... 42 1.7
30emb|AL645567.7| Mouse DNA sequence from clone RP23-181A7 on chro... 42 1.7
31ref|XM_642468.1| Dictyostelium discoideum hypothetical protein (... 40 6.5
32emb|AL032649.1|CEY55D9A Caenorhabditis elegans YAC Y55D9A, compl... 40 6.5
33emb|Z92542.2|HS245G19 Human DNA sequence from clone RP1-245G19 o... 40 6.5
34emb|AL357123.11| Human DNA sequence from clone RP11-287E6 on chr... 40 6.5
35emb|AL137026.21| Human DNA sequence from clone RP11-20J15 on chr... 40 6.5
36emb|X65054.1|CEPGPAG C.elegans cepgpA gene for P-glycoprotein A 40 6.5
37emb|X57841.1|SSSPAGEN S.sobrinus spaA gene for antigen I/II 40 6.5
38emb|BX294164.13| Zebrafish DNA sequence from clone CH211-266D19 ... 40 6.5
39emb|BX821764.1|CNS0AA9S Arabidopsis thaliana Full-length cDNA Co... 40 6.5
40emb|AL133502.4|CNS01DVA Human chromosome 14 DNA sequence BAC R-1... 40 6.5
41emb|CT025634.2| Pan troglodytes chromosome X clone PTB-037N22 ma... 40 6.5 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  109 bits (55), Expect = 8e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                            
Query: 189      ctggtgcttttttgcccagaacatctctacttcttctgctgttcttccggggattcttcc 248
                ||||||||||  |||||||||||| ||||| |||| |||||||||||| |||||||||||
Sbjct: 24692830 ctggtgctttactgcccagaacatttctacctcttttgctgttcttccagggattcttcc 24692889

                                   
Query: 249      agctataagttcccacctg 267
                |||||||||||||||||||
Sbjct: 24692890 agctataagttcccacctg 24692908



 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                            
Query: 204      ccagaacatctctacttcttctgctgttcttccggggattcttccagctataagttccca 263
                ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 24666397 ccagaacttctctacttcttctgctgtccttccgggtattcttccagctataagttccca 24666456

                   
Query: 264      cct 266
                |||
Sbjct: 24666457 cct 24666459



 Score =  101 bits (51), Expect = 2e-18
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                            
Query: 200      ttgcccagaacatctctacttcttctgctgttcttccggggattcttccagctataagtt 259
                ||||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 24639355 ttgcccagaacttctctacttcttctgctgtccttcccggtattcttccagctataagtt 24639414

                       
Query: 260      cccacct 266
                |||||||
Sbjct: 24639415 cccacct 24639421



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                            
Query: 263      acctgttcccgacaagtctgtgcattctgaaaacaagatcttcctctgcctccgtgaaat 322
                |||||||||| ||||| ||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 24693096 acctgttcccaacaagcctgtgcattctgaaaacgagatcttcctcttcttccgtgaaat 24693155

                                                
Query: 323      caacaaaatgctttgcgttgctattaacttct 354
                 |||||||| || |||  || |||||||||||
Sbjct: 24693156 gaacaaaattctgtgcagtgttattaacttct 24693187



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                            
Query: 263      acctgttcccgacaagtctgtgcattctgaaaacaagatcttcctctgcctccgtgaaat 322
                |||||||||||||||| ||||||||||||||||||| |||||||||| | || |||||||
Sbjct: 24639603 acctgttcccgacaagcctgtgcattctgaaaacaatatcttcctcttcttctgtgaaat 24639662

                         
Query: 323      caacaaaat 331
                 ||||||||
Sbjct: 24639663 gaacaaaat 24639671



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                            
Query: 263      acctgttcccgacaagtctgtgcattctgaaaacaagatcttcctctgcctccgtgaaat 322
                |||||||||| ||||| ||||||||||||| |||||||||||||||| | |  |||||||
Sbjct: 24673803 acctgttcccaacaagcctgtgcattctgataacaagatcttcctcttcttatgtgaaat 24673862

                                                
Query: 323      caacaaaatgctttgcgttgctattaacttct 354
                 |||||||| || |||  ||||||||||||||
Sbjct: 24673863 gaacaaaattctgtgcagtgctattaacttct 24673894
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>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1040D09
          Length = 148102

 Score =  109 bits (55), Expect = 8e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                          
Query: 189    ctggtgcttttttgcccagaacatctctacttcttctgctgttcttccggggattcttcc 248
              ||||||||||  |||||||||||| ||||| |||| |||||||||||| |||||||||||
Sbjct: 118793 ctggtgctttactgcccagaacatttctacctcttttgctgttcttccagggattcttcc 118852

                                 
Query: 249    agctataagttcccacctg 267
              |||||||||||||||||||
Sbjct: 118853 agctataagttcccacctg 118871



 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                         
Query: 204   ccagaacatctctacttcttctgctgttcttccggggattcttccagctataagttccca 263
             ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 92360 ccagaacttctctacttcttctgctgtccttccgggtattcttccagctataagttccca 92419

                
Query: 264   cct 266
             |||
Sbjct: 92420 cct 92422



 Score =  101 bits (51), Expect = 2e-18
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                         
Query: 200   ttgcccagaacatctctacttcttctgctgttcttccggggattcttccagctataagtt 259
             ||||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 65318 ttgcccagaacttctctacttcttctgctgtccttcccggtattcttccagctataagtt 65377

                    
Query: 260   cccacct 266
             |||||||
Sbjct: 65378 cccacct 65384



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                          
Query: 263    acctgttcccgacaagtctgtgcattctgaaaacaagatcttcctctgcctccgtgaaat 322
              |||||||||| ||||| ||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 119059 acctgttcccaacaagcctgtgcattctgaaaacgagatcttcctcttcttccgtgaaat 119118

                                              
Query: 323    caacaaaatgctttgcgttgctattaacttct 354
               |||||||| || |||  || |||||||||||
Sbjct: 119119 gaacaaaattctgtgcagtgttattaacttct 119150



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                         
Query: 263   acctgttcccgacaagtctgtgcattctgaaaacaagatcttcctctgcctccgtgaaat 322
             |||||||||||||||| ||||||||||||||||||| |||||||||| | || |||||||
Sbjct: 65566 acctgttcccgacaagcctgtgcattctgaaaacaatatcttcctcttcttctgtgaaat 65625

                      
Query: 323   caacaaaat 331
              ||||||||
Sbjct: 65626 gaacaaaat 65634



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                         
Query: 263   acctgttcccgacaagtctgtgcattctgaaaacaagatcttcctctgcctccgtgaaat 322
             |||||||||| ||||| ||||||||||||| |||||||||||||||| | |  |||||||
Sbjct: 99766 acctgttcccaacaagcctgtgcattctgataacaagatcttcctcttcttatgtgaaat 99825

                                             
Query: 323   caacaaaatgctttgcgttgctattaacttct 354
              |||||||| || |||  ||||||||||||||
Sbjct: 99826 gaacaaaattctgtgcagtgctattaacttct 99857
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>dbj|AP002843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0407B12
          Length = 148762

 Score =  109 bits (55), Expect = 8e-21
 Identities = 73/79 (92%)
 Strand = Plus / Plus

                                                                         
Query: 189   ctggtgcttttttgcccagaacatctctacttcttctgctgttcttccggggattcttcc 248
             ||||||||||  |||||||||||| ||||| |||| |||||||||||| |||||||||||
Sbjct: 61407 ctggtgctttactgcccagaacatttctacctcttttgctgttcttccagggattcttcc 61466

                                
Query: 249   agctataagttcccacctg 267
             |||||||||||||||||||
Sbjct: 61467 agctataagttcccacctg 61485



 Score =  101 bits (51), Expect = 2e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                         
Query: 204   ccagaacatctctacttcttctgctgttcttccggggattcttccagctataagttccca 263
             ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 34974 ccagaacttctctacttcttctgctgtccttccgggtattcttccagctataagttccca 35033

                
Query: 264   cct 266
             |||
Sbjct: 35034 cct 35036



 Score =  101 bits (51), Expect = 2e-18
 Identities = 63/67 (94%)
 Strand = Plus / Plus

                                                                        
Query: 200  ttgcccagaacatctctacttcttctgctgttcttccggggattcttccagctataagtt 259
            ||||||||||| ||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct: 7932 ttgcccagaacttctctacttcttctgctgtccttcccggtattcttccagctataagtt 7991

                   
Query: 260  cccacct 266
            |||||||
Sbjct: 7992 cccacct 7998



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                         
Query: 263   acctgttcccgacaagtctgtgcattctgaaaacaagatcttcctctgcctccgtgaaat 322
             |||||||||| ||||| ||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 61673 acctgttcccaacaagcctgtgcattctgaaaacgagatcttcctcttcttccgtgaaat 61732

                                             
Query: 323   caacaaaatgctttgcgttgctattaacttct 354
              |||||||| || |||  || |||||||||||
Sbjct: 61733 gaacaaaattctgtgcagtgttattaacttct 61764



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                        
Query: 263  acctgttcccgacaagtctgtgcattctgaaaacaagatcttcctctgcctccgtgaaat 322
            |||||||||||||||| ||||||||||||||||||| |||||||||| | || |||||||
Sbjct: 8180 acctgttcccgacaagcctgtgcattctgaaaacaatatcttcctcttcttctgtgaaat 8239

                     
Query: 323  caacaaaat 331
             ||||||||
Sbjct: 8240 gaacaaaat 8248



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 80/92 (86%)
 Strand = Plus / Plus

                                                                         
Query: 263   acctgttcccgacaagtctgtgcattctgaaaacaagatcttcctctgcctccgtgaaat 322
             |||||||||| ||||| ||||||||||||| |||||||||||||||| | |  |||||||
Sbjct: 42380 acctgttcccaacaagcctgtgcattctgataacaagatcttcctcttcttatgtgaaat 42439

                                             
Query: 323   caacaaaatgctttgcgttgctattaacttct 354
              |||||||| || |||  ||||||||||||||
Sbjct: 42440 gaacaaaattctgtgcagtgctattaacttct 42471
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>dbj|AK060239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-D06, full
            insert sequence
          Length = 1262

 Score =  109 bits (55), Expect = 8e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                        
Query: 189  ctggtgcttttttgcccagaacatctctacttcttctgctgttcttccggggattcttcc 248
            ||||||||||  |||||||||||| ||||| |||| |||||||||||| |||||||||||
Sbjct: 1074 ctggtgctttactgcccagaacatttctacctcttttgctgttcttccagggattcttcc 1015

                               
Query: 249  agctataagttcccacctg 267
            |||||||||||||||||||
Sbjct: 1014 agctataagttcccacctg 996



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                       
Query: 263 acctgttcccgacaagtctgtgcattctgaaaacaagatcttcctctgcctccgtgaaat 322
           |||||||||| ||||| ||||||||||||||||| |||||||||||| | ||||||||||
Sbjct: 808 acctgttcccaacaagcctgtgcattctgaaaacgagatcttcctcttcttccgtgaaat 749

                                           
Query: 323 caacaaaatgctttgcgttgctattaacttct 354
            |||||||| || |||  || |||||||||||
Sbjct: 748 gaacaaaattctgtgcagtgttattaacttct 717
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>gb|AY268139.1| Hordeum vulgare BAC 184G9, complete sequece
          Length = 120562

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/64 (93%), Gaps = 2/64 (3%)
 Strand = Plus / Plus

                                                                         
Query: 1     cctgtacatgtatatatatncggcctatggcctcatgggcaatacaagttgcttattcct 60
             ||||||||||||||||||  ||||||||||||||||||| |||||||||||| |||||||
Sbjct: 58378 cctgtacatgtatatata-ccggcctatggcctcatggg-aatacaagttgcatattcct 58435

                 
Query: 61    aaca 64
             ||||
Sbjct: 58436 aaca 58439



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 59/64 (92%), Gaps = 2/64 (3%)
 Strand = Plus / Plus

                                                                         
Query: 1     cctgtacatgtatatatatncggcctatggcctcatgggcaatacaagttgcttattcct 60
             ||||||||||||||||||  ||||||||||||| ||||| |||||||||||| |||||||
Sbjct: 53921 cctgtacatgtatatata-ccggcctatggccttatggg-aatacaagttgcatattcct 53978

                 
Query: 61    aaca 64
             ||||
Sbjct: 53979 aaca 53982
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>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
             complete sequence
          Length = 102842

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/60 (93%), Gaps = 3/60 (5%)
 Strand = Plus / Minus

                                                                         
Query: 5     tacatgtatatatatncggcctatggcctcatgggcaatacaagttgcttattcctaaca 64
             ||||||||||||||  ||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 47146 tacatgtatatata-ccggcctatggcctcatgg--aatacaagttgcttattcctaaca 47090
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>ref|NM_116336.2| Arabidopsis thaliana DNA binding / transcription factor AT4G01060
           transcript variant AT4G01060.1 mRNA, complete cds
          Length = 341

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 229 gttcttccggggattcttccagctataagttcccacctgttcccgacaag 278
           |||||||| ||||| || |||||||| |||||||||||||  ||||||||
Sbjct: 196 gttcttcctgggatcctcccagctatcagttcccacctgtcaccgacaag 147
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>ref|NM_001036490.1| Arabidopsis thaliana DNA binding / transcription factor AT4G01060
           transcript variant AT4G01060.3 mRNA, complete cds
          Length = 388

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 229 gttcttccggggattcttccagctataagttcccacctgttcccgacaag 278
           |||||||| ||||| || |||||||| |||||||||||||  ||||||||
Sbjct: 247 gttcttcctgggatcctcccagctatcagttcccacctgtcaccgacaag 198
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>ref|NM_202764.1| Arabidopsis thaliana DNA binding / transcription factor AT4G01060
           transcript variant AT4G01060.2 mRNA, complete cds
          Length = 405

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 229 gttcttccggggattcttccagctataagttcccacctgttcccgacaag 278
           |||||||| ||||| || |||||||| |||||||||||||  ||||||||
Sbjct: 247 gttcttcctgggatcctcccagctatcagttcccacctgtcaccgacaag 198
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>gb|AY519522.1| Arabidopsis thaliana MYB transcription factor (At4g01060) mRNA,
           complete cds
          Length = 228

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 229 gttcttccggggattcttccagctataagttcccacctgttcccgacaag 278
           |||||||| ||||| || |||||||| |||||||||||||  ||||||||
Sbjct: 188 gttcttcctgggatcctcccagctatcagttcccacctgtcaccgacaag 139
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>emb|BX828755.1|CNS0A2LX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL36ZE02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 405

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 229 gttcttccggggattcttccagctataagttcccacctgttcccgacaag 278
           |||||||| ||||| || |||||||| |||||||||||||  ||||||||
Sbjct: 247 gttcttcctgggatcctcccagctatcagttcccacctgtcaccgacaag 198
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>gb|BT005611.1| Arabidopsis thaliana clone U50786 putative myb family transcription
           factor (At4g01060) mRNA, complete cds
          Length = 265

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 229 gttcttccggggattcttccagctataagttcccacctgttcccgacaag 278
           |||||||| ||||| || |||||||| |||||||||||||  ||||||||
Sbjct: 194 gttcttcctgggatcctcccagctatcagttcccacctgtcaccgacaag 145
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>dbj|AK118043.1| Arabidopsis thaliana mRNA for unknown protein, complete cds, clone:
           RAFL19-27-F14
          Length = 341

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 229 gttcttccggggattcttccagctataagttcccacctgttcccgacaag 278
           |||||||| ||||| || |||||||| |||||||||||||  ||||||||
Sbjct: 196 gttcttcctgggatcctcccagctatcagttcccacctgtcaccgacaag 147
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>emb|BX826597.1|CNS0A37B Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB45ZF07 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 388

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 229 gttcttccggggattcttccagctataagttcccacctgt 268
           |||||||| ||||| || |||||||| |||||||||||||
Sbjct: 247 gttcttcctgggatcctcccagctatcagttcccacctgt 208
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>gb|AC104203.11| Mus musculus chromosome 5, clone RP24-301M6, complete sequence
          Length = 174779

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 55     attcctaacagcttttagcatg 76
              ||||||||||||||||||||||
Sbjct: 126543 attcctaacagcttttagcatg 126564
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>emb|AL161491.2|ATCHRIV3 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 3
          Length = 196149

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 229   gttcttccggggattcttccagctataagttcccacct 266
             |||||||| ||||| || |||||||| |||||||||||
Sbjct: 74641 gttcttcctgggatcctcccagctatcagttcccacct 74604
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>gb|AF007269.1|IG002N01 Arabidopsis thaliana BAC IG002N01
          Length = 124225

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 229    gttcttccggggattcttccagctataagttcccacct 266
              |||||||| ||||| || |||||||| |||||||||||
Sbjct: 113054 gttcttcctgggatcctcccagctatcagttcccacct 113091
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>ref|NM_025729.3| Mus musculus RIKEN cDNA 4921526G09 gene (4921526G09Rik), mRNA
          Length = 6209

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 116  gatggacaggaaaaagcaccc 136
            |||||||||||||||||||||
Sbjct: 2900 gatggacaggaaaaagcaccc 2920
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>ref|XM_390467.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10291.1)
           partial mRNA
          Length = 2085

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 218 cttcttctgctgttcttccgg 238
           |||||||||||||||||||||
Sbjct: 529 cttcttctgctgttcttccgg 509
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>gb|AC158747.3| Mus musculus chromosome 15, clone RP24-248P22, complete sequence
          Length = 156293

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 280   ctgtgcattctgaaaacaaga 300
             |||||||||||||||||||||
Sbjct: 47272 ctgtgcattctgaaaacaaga 47292
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>dbj|AK220185.1| Mus musculus mRNA for mKIAA4135 protein
          Length = 6209

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 116  gatggacaggaaaaagcaccc 136
            |||||||||||||||||||||
Sbjct: 2900 gatggacaggaaaaagcaccc 2920
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>emb|BX470157.6| Zebrafish DNA sequence from clone CH211-119P14 in linkage group 14,
             complete sequence
          Length = 201228

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   ctgctgttcttccggggattc 244
             |||||||||||||||||||||
Sbjct: 62280 ctgctgttcttccggggattc 62300
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>emb|BX530085.3| Zebrafish DNA sequence from clone DKEY-18A21 in linkage group 14,
             complete sequence
          Length = 227326

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   ctgctgttcttccggggattc 244
             |||||||||||||||||||||
Sbjct: 53644 ctgctgttcttccggggattc 53664
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>ref|XM_696979.1| PREDICTED: Danio rerio hypothetical protein LOC555019 (LOC555019),
           mRNA
          Length = 1079

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 224 ctgctgttcttccggggattc 244
           |||||||||||||||||||||
Sbjct: 7   ctgctgttcttccggggattc 27
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>dbj|AK041800.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630039A19 product:inferred: RIKEN cDNA
           4921526G09 gene, full insert sequence
          Length = 1173

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 116 gatggacaggaaaaagcaccc 136
           |||||||||||||||||||||
Sbjct: 633 gatggacaggaaaaagcaccc 653
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>dbj|AK048222.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
           library, clone:C130041B08 product:hypothetical protein,
           full insert sequence
          Length = 3530

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 116 gatggacaggaaaaagcaccc 136
           |||||||||||||||||||||
Sbjct: 80  gatggacaggaaaaagcaccc 100
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>gb|BC044423.1| Danio rerio Nedd4 family interacting protein 1, mRNA (cDNA clone
           MGC:55546 IMAGE:2642703), complete cds
          Length = 1805

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 224 ctgctgttcttccggggattc 244
           |||||||||||||||||||||
Sbjct: 694 ctgctgttcttccggggattc 714
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>gb|AC105969.17| Mus musculus chromosome 15, clone RP23-477B23, complete sequence
          Length = 189238

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 280   ctgtgcattctgaaaacaaga 300
             |||||||||||||||||||||
Sbjct: 83995 ctgtgcattctgaaaacaaga 83975
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>ref|NM_199666.1| Danio rerio Nedd4 family interacting protein 1 (ndfip1), mRNA
          Length = 1805

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 224 ctgctgttcttccggggattc 244
           |||||||||||||||||||||
Sbjct: 694 ctgctgttcttccggggattc 714
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>emb|AL645567.7| Mouse DNA sequence from clone RP23-181A7 on chromosome X, complete
             sequence
          Length = 111339

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 116   gatggacaggaaaaagcaccc 136
             |||||||||||||||||||||
Sbjct: 29653 gatggacaggaaaaagcaccc 29673
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>ref|XM_642468.1| Dictyostelium discoideum hypothetical protein (DDB0189785), partial
            mRNA
          Length = 1113

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 345  attaacttcttttctttcac 364
            ||||||||||||||||||||
Sbjct: 1014 attaacttcttttctttcac 995
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>emb|AL032649.1|CEY55D9A Caenorhabditis elegans YAC Y55D9A, complete sequence
          Length = 16966

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 317  tgaaatcaacaaaatgcttt 336
            ||||||||||||||||||||
Sbjct: 2040 tgaaatcaacaaaatgcttt 2021
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>emb|Z92542.2|HS245G19 Human DNA sequence from clone RP1-245G19 on chromosome Xp22.11-22.2
              Contains the 3' end of the CDKL5 gene for cyclin-dependent
              kinase-like 5, the 3' end of the RS1 gene for retinoschisis
              (X-linked, juvenile) 1, and a gap junction protein, alpha
              2, 38kDa (connexin 38) (GJA2) pseudogene, complete sequence
          Length = 145538

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    atcctgctttccctttcatt 184
              ||||||||||||||||||||
Sbjct: 138880 atcctgctttccctttcatt 138899
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>emb|AL357123.11| Human DNA sequence from clone RP11-287E6 on chromosome Xq26.3-27.3,
             complete sequence
          Length = 72354

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   ctattaacttcttttctttc 362
             ||||||||||||||||||||
Sbjct: 42271 ctattaacttcttttctttc 42290
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>emb|AL137026.21| Human DNA sequence from clone RP11-20J15 on chromosome 10 Contains CXCL12
              gene for chemokine (C-X-C motif) ligand 12 (stromal
              cell-derived factor 1), two putative transcripts and two
              putative CpG islands, complete sequence
          Length = 184474

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 212    tctctacttcttctgctgtt 231
              ||||||||||||||||||||
Sbjct: 140325 tctctacttcttctgctgtt 140306
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>emb|X65054.1|CEPGPAG C.elegans cepgpA gene for P-glycoprotein A
          Length = 9815

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 317 tgaaatcaacaaaatgcttt 336
           ||||||||||||||||||||
Sbjct: 91  tgaaatcaacaaaatgcttt 110
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>emb|X57841.1|SSSPAGEN S.sobrinus spaA gene for antigen I/II
          Length = 4753

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  ttgctgctcatatgcttgct 419
            ||||||||||||||||||||
Sbjct: 1393 ttgctgctcatatgcttgct 1374
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>emb|BX294164.13| Zebrafish DNA sequence from clone CH211-266D19 in linkage group 24,
             complete sequence
          Length = 177516

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 342   gctattaacttcttttcttt 361
             ||||||||||||||||||||
Sbjct: 24314 gctattaacttcttttcttt 24295
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>emb|BX821764.1|CNS0AA9S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL72ZA02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 445

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 259 tcccacctgttcccgacaagtctgtgcattct 290
           ||||||||||  || |||||||||||||||||
Sbjct: 228 tcccacctgtcgccaacaagtctgtgcattct 197
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>emb|AL133502.4|CNS01DVA Human chromosome 14 DNA sequence BAC R-180L10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173292

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    cctatggcctcatgggcaat 43
             ||||||||||||||||||||
Sbjct: 25016 cctatggcctcatgggcaat 24997
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>emb|CT025634.2| Pan troglodytes chromosome X clone PTB-037N22 map Xq28, complete sequence
          Length = 145822

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    atcctgctttccctttcatt 184
              ||||||||||||||||||||
Sbjct: 125000 atcctgctttccctttcatt 124981


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,159,464
Number of Sequences: 3902068
Number of extensions: 6159464
Number of successful extensions: 122985
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122873
Number of HSP's gapped (non-prelim): 106
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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