ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2i22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CU24_ARADI (P80516) Adult-specific rigid cuticular protein 12.4 ... 32 1.2
2GUAA_SYNPX (Q7UA53) GMP synthase [glutamine-hydrolyzing] (EC 6.3... 30 3.5
3UN84A_HUMAN (O94901) Sad1/unc-84 protein-like 1 (Unc-84 homolog A) 29 7.8

>CU24_ARADI (P80516) Adult-specific rigid cuticular protein 12.4 (ACP 12.4)|
          Length = 126

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -2

Query: 419 MLCGEGVYSQSFNNNGIIAHSRVASGCVGPVIDDYIYGD 303
           M    G Y+  FN      HSRV SG  G  +  Y Y D
Sbjct: 5   MTLAGGAYNFGFNTGDATGHSRVESGTAGSAVGSYSYID 43



to top

>GUAA_SYNPX (Q7UA53) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 528

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +2

Query: 347 LPHGCVR*SHCC*MTVNTPLLRIASSQTRCRAHGNSPLLGVQSYYHGTHSTCNVFL 514
           LP G VR +H    T NTP   +A  Q R        L GVQ +    HSTC + L
Sbjct: 147 LPEGFVRLAH----TANTPEAAVAHLQRR--------LYGVQFHPEVVHSTCGMAL 190



to top

>UN84A_HUMAN (O94901) Sad1/unc-84 protein-like 1 (Unc-84 homolog A)|
          Length = 812

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 409 PHSIFSNSMSRPRKLSLVGCAILLPWY--SQYMQRVSSVPGRCHAH 540
           P  +F  + SR  K  L G +   PW+  S   Q+V+S+ G+CH H
Sbjct: 362 PQDVFKPTTSR-LKQPLQGDSEAFPWHWMSGVEQQVASLSGQCHHH 406


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,815,031
Number of Sequences: 219361
Number of extensions: 1650907
Number of successful extensions: 3599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3597
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4528412720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top